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Genes within 1Mb (chr1:40010753:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 127242 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -307060 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -680895 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -334097 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 318571 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -247483 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 433963 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 319268 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -150634 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -520820 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 929437 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -29480 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -86974 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -497988 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 984435 sc-eQTL 5.79e-01 -0.101 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -968935 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -851610 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -439349 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -466537 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -247214 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -681313 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 127242 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -307060 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -680895 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -334097 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 318571 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -247483 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 433963 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 221888 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -150634 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -520820 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 929437 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 -29480 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -86974 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -497988 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000168653 NDUFS5 984435 sc-eQTL 9.64e-01 0.00497 0.111 0.063 PB L2
ENSG00000171793 CTPS1 -968935 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -851610 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -466537 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 239405 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -247214 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -681313 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -680936 eQTL 0.0158 -0.0501 0.0207 0.00177 0.0 0.0486
ENSG00000116981 NT5C1A 338715 pQTL 0.0296 0.0619 0.0284 0.0 0.0 0.0524
ENSG00000116983 HPCAL4 319268 eQTL 0.0335 -0.0718 0.0337 0.0 0.0 0.0486
ENSG00000117000 RLF -150634 eQTL 1.08e-10 0.169 0.0259 0.0 0.0 0.0486
ENSG00000117013 KCNQ4 -773034 eQTL 4.97e-02 -0.158 0.0804 0.0 0.0 0.0486
ENSG00000131238 PPT1 -86974 eQTL 2.86e-27 0.697 0.0625 0.00179 0.0 0.0486
ENSG00000164002 EXO5 -497988 eQTL 2.79e-02 -0.108 0.0489 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -247214 eQTL 1.4e-05 -0.195 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -247483 1.54e-06 2.71e-06 2.43e-07 1.56e-06 3.5e-07 6.38e-07 1.19e-06 3.49e-07 1.5e-06 5.06e-07 2.01e-06 8.32e-07 2.61e-06 3.58e-07 4.96e-07 9.55e-07 9.71e-07 9.7e-07 5.34e-07 4.42e-07 6.56e-07 1.93e-06 1.34e-06 5.3e-07 2.35e-06 6.73e-07 1.05e-06 8.04e-07 1.71e-06 1.4e-06 8.06e-07 2.73e-07 2e-07 6.9e-07 5.64e-07 5.08e-07 7.21e-07 1.55e-07 4.78e-07 2.3e-07 1.85e-07 1.58e-06 2.91e-07 2.06e-07 1.67e-07 1.37e-07 2.1e-07 6.05e-08 1.13e-07
ENSG00000117000 RLF -150634 4.65e-06 5.64e-06 7.8e-07 2.89e-06 7.73e-07 1.29e-06 4e-06 7.37e-07 3.19e-06 1.41e-06 4.69e-06 3.2e-06 7.77e-06 2.04e-06 1.22e-06 2.66e-06 2.06e-06 2.75e-06 1.36e-06 9.72e-07 1.37e-06 4.22e-06 3.67e-06 1.8e-06 5.85e-06 1.24e-06 2.62e-06 1.71e-06 4.24e-06 4.23e-06 1.95e-06 5.6e-07 6.11e-07 1.78e-06 1.88e-06 9.02e-07 9.27e-07 4.21e-07 1.34e-06 3.99e-07 3.04e-07 4.71e-06 3.77e-07 1.62e-07 2.97e-07 3.64e-07 7.91e-07 2.72e-07 2.05e-07
ENSG00000117016 \N -654929 2.77e-07 1.83e-07 5.93e-08 2.31e-07 9.25e-08 9.91e-08 1.81e-07 5.4e-08 1.45e-07 4.94e-08 1.67e-07 8.68e-08 1.53e-07 7.64e-08 5.69e-08 7.97e-08 4.18e-08 1.4e-07 7.16e-08 4.3e-08 1.21e-07 1.25e-07 1.58e-07 2.87e-08 1.55e-07 1.14e-07 1.12e-07 9.74e-08 1.23e-07 1.03e-07 9.7e-08 3.39e-08 3.61e-08 8.44e-08 5.99e-08 2.69e-08 4.49e-08 9.55e-08 6.59e-08 3.99e-08 4.83e-08 1.4e-07 5.24e-08 1.07e-08 3.83e-08 1.66e-08 1.19e-07 3.79e-09 4.79e-08
ENSG00000131238 PPT1 -86974 8.08e-06 1.04e-05 9.77e-07 4.36e-06 1.74e-06 3.26e-06 9.62e-06 1.11e-06 5.86e-06 3.43e-06 1.04e-05 4.77e-06 1.2e-05 3.82e-06 1.55e-06 5.6e-06 3.74e-06 4.4e-06 2.19e-06 2.27e-06 2.92e-06 7.46e-06 6.94e-06 1.95e-06 1.24e-05 2.68e-06 4.47e-06 2.21e-06 8.25e-06 7.78e-06 4.12e-06 5.67e-07 7.57e-07 2.69e-06 2.44e-06 1.7e-06 1.38e-06 5.57e-07 1.24e-06 7.37e-07 5.19e-07 9.16e-06 9.02e-07 1.67e-07 7.7e-07 9.48e-07 1.02e-06 7.11e-07 5.14e-07
ENSG00000259943 AL050341.2 -247214 1.54e-06 2.59e-06 2.43e-07 1.56e-06 3.5e-07 6.38e-07 1.23e-06 3.51e-07 1.5e-06 5.06e-07 2.01e-06 8.32e-07 2.62e-06 3.61e-07 4.96e-07 9.98e-07 9.71e-07 9.65e-07 5.34e-07 4.58e-07 6.61e-07 1.93e-06 1.35e-06 5.3e-07 2.35e-06 6.73e-07 1.05e-06 8.04e-07 1.71e-06 1.4e-06 8.06e-07 2.73e-07 2e-07 6.68e-07 5.64e-07 5.08e-07 7.21e-07 1.55e-07 4.78e-07 2.31e-07 1.85e-07 1.64e-06 2.92e-07 2.06e-07 1.67e-07 1.38e-07 2.1e-07 6.05e-08 1.13e-07