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Genes within 1Mb (chr1:40008057:GA:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 124546 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -309756 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -683591 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -336793 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 315875 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -250179 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 431267 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 316572 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -153330 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -523516 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 926741 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -32176 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -89670 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -500684 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 981739 sc-eQTL 5.79e-01 -0.101 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -971631 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -854306 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -442045 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -469233 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -249910 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -684009 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 124546 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -309756 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -683591 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -336793 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 315875 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -250179 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 431267 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 219192 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -153330 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -523516 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 926741 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 -32176 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -89670 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -500684 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000168653 NDUFS5 981739 sc-eQTL 9.64e-01 0.00497 0.111 0.063 PB L2
ENSG00000171793 CTPS1 -971631 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -854306 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -469233 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 236709 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -249910 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -684009 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -250179 0.000162 9.4e-06 5.93e-07 3.5e-06 1.36e-06 6.2e-06 8.61e-06 4.75e-07 6.77e-06 4.19e-06 8.01e-06 2.94e-06 1.13e-05 4.25e-06 3.35e-06 5.07e-06 2.07e-06 7.17e-06 1.5e-06 1.05e-06 2.71e-06 8.11e-06 4.69e-06 1.49e-06 5.99e-06 1.38e-06 2.27e-06 1.83e-06 4.84e-06 4.34e-06 3.42e-06 2.44e-07 6.49e-07 2.77e-06 1.63e-06 1e-06 9.08e-07 2.95e-07 1.06e-06 3.54e-07 2.8e-07 7.37e-06 1.57e-06 1.94e-08 4.19e-07 4.03e-07 8.29e-07 2.49e-07 1.35e-07
ENSG00000117000 \N -153330 0.000191 1.21e-05 1.24e-06 4.49e-06 1.48e-06 1.19e-05 1.04e-05 9.98e-07 9.51e-06 5.12e-06 9.08e-06 4.74e-06 1.36e-05 4.99e-06 4.43e-06 6.63e-06 3.76e-06 1.08e-05 2.58e-06 1.14e-06 3.66e-06 1.08e-05 6.55e-06 2.32e-06 8.8e-06 2.05e-06 4.36e-06 1.78e-06 7.11e-06 7.35e-06 4.32e-06 4.56e-07 6.5e-07 2.99e-06 2.18e-06 9.79e-07 9.76e-07 3.94e-07 9.69e-07 4.26e-07 3.45e-07 8.17e-06 2.52e-06 5.89e-09 8.28e-07 3.94e-07 1.05e-06 2.63e-07 2.9e-07
ENSG00000117016 \N -657625 1.27e-05 4.13e-06 2.19e-07 2.01e-06 2.69e-07 8.41e-07 1.31e-06 2.68e-07 2.28e-06 1.27e-06 2.77e-06 1.42e-06 4.48e-06 2.45e-06 8.74e-07 1.18e-06 8.06e-07 2.22e-06 5.75e-07 6.7e-07 6.56e-07 3.09e-06 1.44e-06 5.54e-07 2.23e-06 6.01e-07 1.04e-06 8.75e-07 1.7e-06 1.29e-06 1.74e-06 6.87e-08 1.28e-07 1.35e-06 5.49e-07 3.38e-07 2.83e-07 6.78e-08 4.82e-07 8.36e-09 4.36e-08 2.12e-06 4.24e-07 1.43e-08 1.73e-07 1.19e-07 1.11e-07 2.8e-09 4.83e-08
ENSG00000131238 \N -89670 0.000198 1.39e-05 1.29e-06 6.54e-06 2.19e-06 1.78e-05 1.45e-05 1.18e-06 1.18e-05 6.13e-06 1.19e-05 5.86e-06 1.9e-05 7.1e-06 5.37e-06 7.43e-06 4.74e-06 1.57e-05 2.99e-06 2.44e-06 5.84e-06 1.44e-05 7.56e-06 3.39e-06 1.29e-05 2.58e-06 6.59e-06 3.37e-06 1.02e-05 8.58e-06 5.79e-06 5.83e-07 8.97e-07 3.64e-06 2.36e-06 1.3e-06 1.56e-06 4.53e-07 1.72e-06 9.87e-07 2.78e-07 1.04e-05 2.72e-06 4.11e-08 9.22e-07 1.12e-06 1.26e-06 7.21e-07 3.18e-07
ENSG00000259943 \N -249910 0.000162 9.4e-06 5.92e-07 3.47e-06 1.36e-06 6.2e-06 8.61e-06 4.77e-07 6.77e-06 4.19e-06 8.09e-06 2.94e-06 1.13e-05 4.25e-06 3.35e-06 5.07e-06 2.07e-06 7.17e-06 1.5e-06 1.05e-06 2.75e-06 8.11e-06 4.69e-06 1.49e-06 5.99e-06 1.38e-06 2.27e-06 1.83e-06 4.84e-06 4.34e-06 3.42e-06 2.44e-07 6.49e-07 2.77e-06 1.63e-06 1e-06 9.08e-07 2.95e-07 1.06e-06 3.54e-07 2.8e-07 7.37e-06 1.57e-06 1.94e-08 4.19e-07 4.03e-07 8.29e-07 2.62e-07 1.35e-07
ENSG00000261798 \N 219081 0.000173 9.88e-06 8.29e-07 3.69e-06 1.62e-06 7.21e-06 9.36e-06 6.01e-07 7.7e-06 4.22e-06 8.28e-06 3.3e-06 1.15e-05 4.45e-06 3.67e-06 5.77e-06 2.99e-06 7.69e-06 1.65e-06 8.96e-07 2.84e-06 8.99e-06 5.12e-06 1.81e-06 7.14e-06 1.65e-06 2.55e-06 1.53e-06 5.87e-06 4.67e-06 3.51e-06 2.74e-07 7.93e-07 2.79e-06 1.71e-06 9.86e-07 9.55e-07 3.65e-07 9.12e-07 4.35e-07 2.83e-07 8.34e-06 1.69e-06 1.53e-08 4.54e-07 3.61e-07 8.55e-07 2.22e-07 1.6e-07