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Genes within 1Mb (chr1:39991863:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 108352 sc-eQTL 9.68e-01 -0.00775 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -325950 sc-eQTL 7.25e-01 -0.0518 0.147 0.05 CD4_CTL L2
ENSG00000066136 NFYC -699785 sc-eQTL 7.53e-01 0.0638 0.202 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -352987 sc-eQTL 4.99e-01 -0.0888 0.131 0.05 CD4_CTL L2
ENSG00000084072 PPIE 299681 sc-eQTL 7.38e-01 -0.0673 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -266373 sc-eQTL 7.84e-01 -0.0549 0.2 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 415073 sc-eQTL 2.96e-01 -0.194 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 300378 sc-eQTL 9.92e-01 0.00182 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -169524 sc-eQTL 7.00e-01 0.0742 0.192 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -539710 sc-eQTL 7.92e-01 0.0479 0.182 0.05 CD4_CTL L2
ENSG00000127603 MACF1 910547 sc-eQTL 3.64e-02 -0.316 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -48370 sc-eQTL 4.61e-03 0.365 0.127 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -105864 sc-eQTL 5.97e-01 0.107 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -516878 sc-eQTL 4.50e-01 0.143 0.19 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 965545 sc-eQTL 6.47e-01 -0.0833 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -987825 sc-eQTL 9.96e-01 -0.00102 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -870500 sc-eQTL 7.65e-01 0.0476 0.159 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -458239 sc-eQTL 9.81e-01 0.00416 0.172 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -485427 sc-eQTL 4.80e-01 0.132 0.186 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -266104 sc-eQTL 2.21e-03 0.55 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -700203 sc-eQTL 1.84e-01 -0.251 0.189 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 108352 sc-eQTL 6.64e-01 -0.108 0.249 0.059 PB L2
ENSG00000049089 COL9A2 -325950 sc-eQTL 9.92e-01 -0.00234 0.22 0.059 PB L2
ENSG00000066136 NFYC -699785 sc-eQTL 4.57e-02 0.474 0.234 0.059 PB L2
ENSG00000084070 SMAP2 -352987 sc-eQTL 4.16e-01 0.141 0.172 0.059 PB L2
ENSG00000084072 PPIE 299681 sc-eQTL 7.30e-01 -0.0774 0.224 0.059 PB L2
ENSG00000084073 ZMPSTE24 -266373 sc-eQTL 4.63e-01 -0.149 0.203 0.059 PB L2
ENSG00000090621 PABPC4 415073 sc-eQTL 2.79e-01 0.147 0.135 0.059 PB L2
ENSG00000116985 BMP8B 202998 sc-eQTL 3.09e-01 -0.159 0.156 0.059 PB L2
ENSG00000117000 RLF -169524 sc-eQTL 4.40e-01 0.194 0.251 0.059 PB L2
ENSG00000117010 ZNF684 -539710 sc-eQTL 6.84e-01 0.0854 0.209 0.059 PB L2
ENSG00000127603 MACF1 910547 sc-eQTL 5.00e-02 0.413 0.208 0.059 PB L2
ENSG00000131236 CAP1 -48370 sc-eQTL 4.03e-01 0.176 0.21 0.059 PB L2
ENSG00000131238 PPT1 -105864 sc-eQTL 5.60e-01 0.134 0.23 0.059 PB L2
ENSG00000164002 EXO5 -516878 sc-eQTL 4.27e-01 0.183 0.23 0.059 PB L2
ENSG00000168653 NDUFS5 965545 sc-eQTL 9.83e-01 0.00249 0.114 0.059 PB L2
ENSG00000171793 CTPS1 -987825 sc-eQTL 2.28e-02 -0.546 0.237 0.059 PB L2
ENSG00000179862 CITED4 -870500 sc-eQTL 7.24e-01 -0.0758 0.214 0.059 PB L2
ENSG00000187815 ZFP69 -485427 sc-eQTL 5.09e-02 0.439 0.222 0.059 PB L2
ENSG00000198754 OXCT2 220515 sc-eQTL 7.51e-02 0.359 0.2 0.059 PB L2
ENSG00000259943 AL050341.2 -266104 sc-eQTL 5.79e-01 -0.133 0.238 0.059 PB L2
ENSG00000272145 NFYC-AS1 -700203 sc-eQTL 5.63e-01 -0.13 0.225 0.059 PB L2
ENSG00000043514 TRIT1 108352 sc-eQTL 6.25e-01 0.103 0.21 0.052 gdT L2
ENSG00000066136 NFYC -699785 sc-eQTL 3.67e-01 0.221 0.244 0.052 gdT L2
ENSG00000084070 SMAP2 -352987 sc-eQTL 7.27e-01 -0.0554 0.158 0.052 gdT L2
ENSG00000084072 PPIE 299681 sc-eQTL 8.77e-01 -0.0354 0.227 0.052 gdT L2
ENSG00000084073 ZMPSTE24 -266373 sc-eQTL 1.60e-01 0.324 0.229 0.052 gdT L2
ENSG00000090621 PABPC4 415073 sc-eQTL 4.37e-01 0.156 0.2 0.052 gdT L2
ENSG00000116985 BMP8B 202998 sc-eQTL 5.72e-01 -0.108 0.191 0.052 gdT L2
ENSG00000117000 RLF -169524 sc-eQTL 7.27e-01 0.0664 0.19 0.052 gdT L2
ENSG00000117010 ZNF684 -539710 sc-eQTL 5.97e-01 0.116 0.219 0.052 gdT L2
ENSG00000127603 MACF1 910547 sc-eQTL 5.62e-01 -0.11 0.19 0.052 gdT L2
ENSG00000131236 CAP1 -48370 sc-eQTL 1.00e-01 0.258 0.156 0.052 gdT L2
ENSG00000131238 PPT1 -105864 sc-eQTL 2.62e-01 0.25 0.222 0.052 gdT L2
ENSG00000164002 EXO5 -516878 sc-eQTL 3.20e-01 -0.222 0.222 0.052 gdT L2
ENSG00000168389 MFSD2A 36751 sc-eQTL 1.04e-01 -0.307 0.188 0.052 gdT L2
ENSG00000168653 NDUFS5 965545 sc-eQTL 5.57e-01 0.122 0.207 0.052 gdT L2
ENSG00000171793 CTPS1 -987825 sc-eQTL 2.16e-01 -0.257 0.207 0.052 gdT L2
ENSG00000179862 CITED4 -870500 sc-eQTL 2.33e-01 -0.254 0.212 0.052 gdT L2
ENSG00000187801 ZFP69B -458239 sc-eQTL 6.82e-01 0.0853 0.208 0.052 gdT L2
ENSG00000187815 ZFP69 -485427 sc-eQTL 9.29e-01 0.0198 0.223 0.052 gdT L2
ENSG00000198754 OXCT2 220515 sc-eQTL 8.40e-01 -0.0317 0.157 0.052 gdT L2
ENSG00000259943 AL050341.2 -266104 sc-eQTL 9.96e-01 0.00121 0.214 0.052 gdT L2
ENSG00000272145 NFYC-AS1 -700203 sc-eQTL 5.59e-01 0.128 0.219 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -699826 eQTL 0.0088 -0.0547 0.0208 0.00241 0.0 0.0476
ENSG00000116983 HPCAL4 300378 eQTL 0.0278 -0.0748 0.0339 0.0 0.0 0.0476
ENSG00000117000 RLF -169524 eQTL 1.70e-08 0.149 0.0262 0.0 0.0 0.0476
ENSG00000131238 PPT1 -105864 eQTL 2.66e-23 0.648 0.0635 0.00118 0.0 0.0476
ENSG00000164002 EXO5 -516878 eQTL 3.11e-02 -0.106 0.0492 0.0 0.0 0.0476
ENSG00000198754 OXCT2 220515 eQTL 0.0998 -0.122 0.0742 0.00113 0.0 0.0476
ENSG00000259943 AL050341.2 -266104 eQTL 8.98e-05 -0.177 0.0451 0.0 0.0 0.0476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -266373 3.04e-06 1.58e-06 3.28e-07 1.23e-06 2.66e-07 6.74e-07 1.26e-06 3.69e-07 1.43e-06 6.23e-07 2.1e-06 9.12e-07 2.61e-06 3.9e-07 4.52e-07 9.19e-07 9.18e-07 1.12e-06 8.15e-07 5.73e-07 5.61e-07 1.92e-06 1.1e-06 5.65e-07 2.39e-06 4.79e-07 9.28e-07 7.24e-07 1.6e-06 1.4e-06 8.27e-07 9.48e-08 2.53e-07 5.71e-07 5.28e-07 4.69e-07 5.02e-07 1.23e-07 4.82e-07 2.76e-07 2.8e-07 1.65e-06 2.91e-07 1.22e-08 2.22e-07 1.23e-07 2.15e-07 8.73e-08 9.59e-08
ENSG00000117000 RLF -169524 5.08e-06 3.7e-06 2.7e-07 1.89e-06 4.93e-07 1.09e-06 2.5e-06 5.98e-07 1.88e-06 9.48e-07 2.72e-06 1.44e-06 4.79e-06 1.41e-06 9.23e-07 1.49e-06 1.49e-06 2.13e-06 9.86e-07 1.27e-06 8.12e-07 3.02e-06 2.64e-06 1.08e-06 4.02e-06 1.3e-06 1.26e-06 1.51e-06 2.91e-06 3e-06 2e-06 2.31e-07 5.88e-07 1.18e-06 1.02e-06 6.23e-07 7.56e-07 3.35e-07 1.09e-06 3.53e-07 3.31e-07 3.32e-06 5.78e-07 8.06e-08 3.87e-07 3.09e-07 4.12e-07 2.51e-07 2.8e-07
ENSG00000117016 \N -673819 8.43e-07 2.4e-07 6.41e-08 2.54e-07 9.94e-08 1.26e-07 3.33e-07 5.82e-08 1.85e-07 1.05e-07 2.47e-07 1.72e-07 3.48e-07 8.26e-08 9.2e-08 9.11e-08 5.42e-08 2.43e-07 7.76e-08 6.16e-08 1.22e-07 2.06e-07 1.89e-07 3.41e-08 2.74e-07 1.31e-07 1.31e-07 1.26e-07 1.44e-07 2.26e-07 1.52e-07 4.32e-08 4.23e-08 1.03e-07 5.41e-08 2.79e-08 4.47e-08 9.17e-08 5.59e-08 7.65e-08 5.96e-08 1.63e-07 3.26e-08 1.49e-08 4.91e-08 6.98e-09 8.67e-08 2e-09 4.91e-08
ENSG00000131238 PPT1 -105864 8.08e-06 5.27e-06 7.85e-07 3.17e-06 8.58e-07 1.91e-06 6.29e-06 9.12e-07 4.99e-06 2.11e-06 5.32e-06 3.54e-06 7.64e-06 1.94e-06 1.31e-06 2.63e-06 1.91e-06 3.79e-06 1.41e-06 9.46e-07 2.29e-06 4.72e-06 4.37e-06 1.38e-06 6.16e-06 1.46e-06 2.55e-06 1.57e-06 4.47e-06 4.99e-06 2.85e-06 4.69e-07 7.91e-07 1.52e-06 2.06e-06 9.01e-07 9.07e-07 4.49e-07 1.04e-06 3.8e-07 2.54e-07 5.49e-06 3.65e-07 1.67e-07 3.7e-07 3.23e-07 6.63e-07 2.08e-07 1.92e-07
ENSG00000259943 AL050341.2 -266104 3.04e-06 1.58e-06 3.28e-07 1.23e-06 2.66e-07 6.74e-07 1.26e-06 3.69e-07 1.43e-06 6.23e-07 2.1e-06 9.12e-07 2.61e-06 3.9e-07 4.52e-07 9.19e-07 9.18e-07 1.12e-06 8.15e-07 5.73e-07 5.61e-07 1.87e-06 1.1e-06 5.65e-07 2.39e-06 4.79e-07 9.28e-07 7.24e-07 1.6e-06 1.43e-06 8.27e-07 9.48e-08 2.53e-07 5.71e-07 5.28e-07 4.69e-07 5.02e-07 1.24e-07 4.72e-07 2.76e-07 2.8e-07 1.65e-06 2.91e-07 1.23e-08 2.22e-07 1.23e-07 2.15e-07 8.73e-08 9.59e-08