Genes within 1Mb (chr1:39988503:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 104992 sc-eQTL 8.22e-01 -0.0574 0.255 0.056 PB L2
ENSG00000049089 COL9A2 -329310 sc-eQTL 6.02e-01 -0.117 0.224 0.056 PB L2
ENSG00000066136 NFYC -703145 sc-eQTL 4.50e-02 0.485 0.239 0.056 PB L2
ENSG00000084070 SMAP2 -356347 sc-eQTL 3.08e-01 0.18 0.176 0.056 PB L2
ENSG00000084072 PPIE 296321 sc-eQTL 7.94e-01 0.0598 0.229 0.056 PB L2
ENSG00000084073 ZMPSTE24 -269733 sc-eQTL 6.49e-01 -0.0947 0.207 0.056 PB L2
ENSG00000090621 PABPC4 411713 sc-eQTL 2.37e-01 0.164 0.138 0.056 PB L2
ENSG00000116985 BMP8B 199638 sc-eQTL 1.49e-01 -0.23 0.158 0.056 PB L2
ENSG00000117000 RLF -172884 sc-eQTL 2.79e-01 0.278 0.256 0.056 PB L2
ENSG00000117010 ZNF684 -543070 sc-eQTL 6.89e-01 -0.0858 0.214 0.056 PB L2
ENSG00000127603 MACF1 907187 sc-eQTL 8.39e-02 0.373 0.214 0.056 PB L2
ENSG00000131236 CAP1 -51730 sc-eQTL 3.07e-01 0.22 0.214 0.056 PB L2
ENSG00000131238 PPT1 -109224 sc-eQTL 7.69e-01 0.0694 0.235 0.056 PB L2
ENSG00000164002 EXO5 -520238 sc-eQTL 3.40e-01 0.225 0.235 0.056 PB L2
ENSG00000168653 NDUFS5 962185 sc-eQTL 9.07e-01 -0.0137 0.117 0.056 PB L2
ENSG00000171793 CTPS1 -991185 sc-eQTL 5.26e-02 -0.477 0.243 0.056 PB L2
ENSG00000174574 AKIRIN1 997227 sc-eQTL 8.60e-01 -0.0418 0.237 0.056 PB L2
ENSG00000179862 CITED4 -873860 sc-eQTL 7.52e-01 -0.0694 0.219 0.056 PB L2
ENSG00000187815 ZFP69 -488787 sc-eQTL 3.48e-02 0.484 0.226 0.056 PB L2
ENSG00000198754 OXCT2 217155 sc-eQTL 4.49e-02 0.412 0.203 0.056 PB L2
ENSG00000259943 AL050341.2 -269464 sc-eQTL 3.39e-01 -0.233 0.243 0.056 PB L2
ENSG00000272145 NFYC-AS1 -703563 sc-eQTL 5.85e-01 -0.126 0.23 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -703186 eQTL 0.0147 -0.0506 0.0207 0.00166 0.0 0.0486
ENSG00000116983 HPCAL4 297018 eQTL 0.0259 -0.0752 0.0337 0.0 0.0 0.0486
ENSG00000117000 RLF -172884 eQTL 7.74e-09 0.151 0.026 0.0 0.0 0.0486
ENSG00000131238 PPT1 -109224 eQTL 1.19e-22 0.635 0.0631 0.00107 0.0 0.0486
ENSG00000164002 EXO5 -520238 eQTL 4.02e-02 -0.1 0.0489 0.0 0.0 0.0486
ENSG00000198754 OXCT2 217155 eQTL 0.102 -0.121 0.0737 0.00119 0.0 0.0486
ENSG00000259943 AL050341.2 -269464 eQTL 6.92e-05 -0.179 0.0448 0.0 0.0 0.0486


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -269733 1.28e-06 9e-07 2.13e-07 9.74e-07 3.36e-07 5.88e-07 1.63e-06 4.1e-07 1.49e-06 5.63e-07 1.79e-06 7.63e-07 2.13e-06 3.03e-07 5.37e-07 9.16e-07 9.01e-07 7e-07 8.61e-07 6.16e-07 7.68e-07 1.59e-06 8.9e-07 5.66e-07 2.24e-06 5.38e-07 9.01e-07 7.19e-07 1.31e-06 1.23e-06 7.03e-07 3.07e-07 2.54e-07 6.89e-07 5.6e-07 4.46e-07 6.08e-07 2.4e-07 4.67e-07 3.11e-07 2.79e-07 1.51e-06 1.23e-07 4.23e-08 3.17e-07 1.2e-07 2.29e-07 6.08e-08 1.93e-07
ENSG00000117000 RLF -172884 2.7e-06 2.49e-06 4.42e-07 1.7e-06 6.22e-07 8.48e-07 1.82e-06 6.98e-07 1.95e-06 1.01e-06 2.49e-06 1.44e-06 3.44e-06 1.38e-06 9.32e-07 1.62e-06 1.27e-06 2.24e-06 1.22e-06 1.37e-06 1.16e-06 3.02e-06 2.31e-06 1.22e-06 3.36e-06 1.27e-06 1.38e-06 1.64e-06 2.16e-06 2e-06 1.71e-06 4.15e-07 5.71e-07 1.25e-06 1.27e-06 9.49e-07 7.8e-07 4.58e-07 1.17e-06 3.79e-07 2.39e-07 3.06e-06 5.13e-07 2.15e-07 3.69e-07 3.24e-07 8.28e-07 2.15e-07 1.59e-07
ENSG00000117016 \N -677179 3.21e-07 1.53e-07 6.45e-08 2.15e-07 1.07e-07 7.75e-08 2.24e-07 5.89e-08 1.71e-07 1.03e-07 1.66e-07 1.48e-07 2.13e-07 8.07e-08 6.27e-08 9.01e-08 5.27e-08 1.8e-07 7.29e-08 6.03e-08 1.26e-07 1.65e-07 1.68e-07 4.07e-08 2.09e-07 1.39e-07 1.23e-07 1.12e-07 1.37e-07 1.36e-07 1.21e-07 4.71e-08 3.74e-08 9.58e-08 4.41e-08 3.05e-08 4.06e-08 7.63e-08 6.35e-08 6.07e-08 5.04e-08 1.59e-07 3.13e-08 7.51e-09 3.61e-08 8.31e-09 7.26e-08 0.0 4.97e-08
ENSG00000131238 PPT1 -109224 4.48e-06 4.74e-06 6.9e-07 2.79e-06 1.52e-06 1.68e-06 4.48e-06 1.03e-06 5.12e-06 2.39e-06 5.21e-06 3.35e-06 7.06e-06 2.46e-06 1.33e-06 3.71e-06 1.82e-06 3.49e-06 1.54e-06 1.15e-06 3.15e-06 4.91e-06 4.62e-06 1.71e-06 6.11e-06 1.97e-06 2.55e-06 1.77e-06 4.46e-06 4.38e-06 2.75e-06 4.18e-07 5.55e-07 1.61e-06 2.13e-06 1.17e-06 1.06e-06 4.57e-07 8.58e-07 5.21e-07 7.1e-07 5.71e-06 3.65e-07 1.55e-07 7.74e-07 9.16e-07 1.14e-06 7.35e-07 5.13e-07
ENSG00000259943 AL050341.2 -269464 1.28e-06 9e-07 2.13e-07 9.74e-07 3.36e-07 6.02e-07 1.63e-06 3.9e-07 1.49e-06 5.63e-07 1.79e-06 7.63e-07 2.13e-06 3.03e-07 5.37e-07 9.33e-07 9.01e-07 7.05e-07 8.61e-07 6.16e-07 7.68e-07 1.59e-06 8.9e-07 5.66e-07 2.28e-06 5.38e-07 9.18e-07 7.19e-07 1.31e-06 1.25e-06 7.03e-07 3.07e-07 2.54e-07 6.89e-07 5.49e-07 4.46e-07 6.08e-07 2.42e-07 4.94e-07 3.11e-07 2.79e-07 1.51e-06 1.23e-07 4.23e-08 3.17e-07 1.2e-07 2.29e-07 6.08e-08 1.93e-07