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Genes within 1Mb (chr1:39976651:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 93140 sc-eQTL 1.11e-02 0.543 0.211 0.052 gdT L2
ENSG00000066136 NFYC -714997 sc-eQTL 6.62e-01 -0.11 0.251 0.052 gdT L2
ENSG00000084070 SMAP2 -368199 sc-eQTL 8.50e-01 -0.0307 0.163 0.052 gdT L2
ENSG00000084072 PPIE 284469 sc-eQTL 5.49e-01 -0.14 0.233 0.052 gdT L2
ENSG00000084073 ZMPSTE24 -281585 sc-eQTL 7.03e-01 0.0904 0.237 0.052 gdT L2
ENSG00000090621 PABPC4 399861 sc-eQTL 1.70e-01 0.282 0.204 0.052 gdT L2
ENSG00000116985 BMP8B 187786 sc-eQTL 3.69e-02 -0.406 0.193 0.052 gdT L2
ENSG00000117000 RLF -184736 sc-eQTL 3.72e-02 0.404 0.192 0.052 gdT L2
ENSG00000117010 ZNF684 -554922 sc-eQTL 5.41e-01 -0.138 0.225 0.052 gdT L2
ENSG00000127603 MACF1 895335 sc-eQTL 4.22e-01 -0.157 0.195 0.052 gdT L2
ENSG00000131236 CAP1 -63582 sc-eQTL 5.84e-01 0.0886 0.161 0.052 gdT L2
ENSG00000131238 PPT1 -121076 sc-eQTL 2.15e-02 0.522 0.224 0.052 gdT L2
ENSG00000164002 EXO5 -532090 sc-eQTL 4.51e-01 -0.173 0.229 0.052 gdT L2
ENSG00000168389 MFSD2A 21539 sc-eQTL 7.90e-01 0.0519 0.194 0.052 gdT L2
ENSG00000168653 NDUFS5 950333 sc-eQTL 1.88e-01 0.28 0.211 0.052 gdT L2
ENSG00000174574 AKIRIN1 985375 sc-eQTL 6.99e-01 -0.0799 0.207 0.052 gdT L2
ENSG00000179862 CITED4 -885712 sc-eQTL 6.92e-01 0.0865 0.218 0.052 gdT L2
ENSG00000187801 ZFP69B -473451 sc-eQTL 7.42e-03 0.565 0.208 0.052 gdT L2
ENSG00000187815 ZFP69 -500639 sc-eQTL 9.53e-01 0.0137 0.229 0.052 gdT L2
ENSG00000198754 OXCT2 205303 sc-eQTL 5.63e-01 -0.0933 0.161 0.052 gdT L2
ENSG00000259943 AL050341.2 -281316 sc-eQTL 7.26e-01 -0.077 0.219 0.052 gdT L2
ENSG00000272145 NFYC-AS1 -715415 sc-eQTL 6.71e-02 0.409 0.222 0.052 gdT L2
ENSG00000043514 TRIT1 93140 sc-eQTL 5.82e-01 0.101 0.183 0.051 pDC L2
ENSG00000049089 COL9A2 -341162 sc-eQTL 5.70e-01 -0.109 0.192 0.051 pDC L2
ENSG00000066136 NFYC -714997 sc-eQTL 4.15e-01 0.183 0.224 0.051 pDC L2
ENSG00000084070 SMAP2 -368199 sc-eQTL 3.33e-01 0.151 0.156 0.051 pDC L2
ENSG00000084072 PPIE 284469 sc-eQTL 4.71e-01 0.163 0.225 0.051 pDC L2
ENSG00000084073 ZMPSTE24 -281585 sc-eQTL 1.77e-01 -0.249 0.184 0.051 pDC L2
ENSG00000090621 PABPC4 399861 sc-eQTL 8.68e-01 -0.0372 0.223 0.051 pDC L2
ENSG00000116990 MYCL 74395 sc-eQTL 9.47e-01 -0.0105 0.159 0.051 pDC L2
ENSG00000117000 RLF -184736 sc-eQTL 1.39e-01 0.317 0.213 0.051 pDC L2
ENSG00000117010 ZNF684 -554922 sc-eQTL 8.63e-01 -0.0356 0.206 0.051 pDC L2
ENSG00000117016 RIMS3 -689031 sc-eQTL 1.47e-01 0.267 0.183 0.051 pDC L2
ENSG00000127603 MACF1 895335 sc-eQTL 2.99e-01 -0.214 0.205 0.051 pDC L2
ENSG00000131236 CAP1 -63582 sc-eQTL 2.94e-01 -0.188 0.178 0.051 pDC L2
ENSG00000131238 PPT1 -121076 sc-eQTL 3.98e-01 0.152 0.18 0.051 pDC L2
ENSG00000164002 EXO5 -532090 sc-eQTL 6.35e-01 0.0873 0.183 0.051 pDC L2
ENSG00000168389 MFSD2A 21539 sc-eQTL 6.26e-01 -0.087 0.178 0.051 pDC L2
ENSG00000168653 NDUFS5 950333 sc-eQTL 5.72e-01 0.101 0.178 0.051 pDC L2
ENSG00000174574 AKIRIN1 985375 sc-eQTL 1.82e-01 -0.257 0.192 0.051 pDC L2
ENSG00000179862 CITED4 -885712 sc-eQTL 7.97e-01 0.046 0.178 0.051 pDC L2
ENSG00000187815 ZFP69 -500639 sc-eQTL 1.90e-01 -0.248 0.188 0.051 pDC L2
ENSG00000198754 OXCT2 205303 sc-eQTL 3.54e-02 -0.401 0.189 0.051 pDC L2
ENSG00000236546 AL033527.2 78906 sc-eQTL 7.29e-01 -0.0625 0.18 0.051 pDC L2
ENSG00000259943 AL050341.2 -281316 sc-eQTL 3.98e-01 0.165 0.195 0.051 pDC L2
ENSG00000272145 NFYC-AS1 -715415 sc-eQTL 5.76e-01 -0.108 0.192 0.051 pDC L2
ENSG00000284719 AL033527.4 177229 sc-eQTL 8.03e-02 -0.319 0.181 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116985 BMP8B 187786 eQTL 4.76e-02 -0.165 0.0833 0.0 0.0 0.0285
ENSG00000127603 MACF1 895335 eQTL 0.0383 -0.0974 0.047 0.0 0.0 0.0285
ENSG00000131238 PPT1 -121076 eQTL 1.30e-02 0.209 0.084 0.0 0.0 0.0285
ENSG00000187801 ZFP69B -473456 eQTL 0.0434 0.159 0.0784 0.00109 0.0 0.0285
ENSG00000198754 OXCT2 205303 eQTL 0.0123 -0.234 0.0933 0.0 0.0 0.0285
ENSG00000284719 AL033527.5 177229 eQTL 5.73e-07 -0.575 0.114 0.0 0.0 0.0285

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000179862 \N -885715 2.64e-07 1.25e-07 3.88e-08 1.8e-07 9.01e-08 9.87e-08 1.44e-07 5.33e-08 1.41e-07 4.4e-08 1.62e-07 8.14e-08 1.41e-07 6.38e-08 6.17e-08 7.26e-08 3.88e-08 1.14e-07 5.82e-08 4.45e-08 1.05e-07 1.23e-07 1.32e-07 4.26e-08 1.32e-07 1.14e-07 1.11e-07 9.32e-08 1.03e-07 1.1e-07 9.64e-08 4.07e-08 3.28e-08 8.49e-08 8.38e-08 3.77e-08 5.29e-08 9.25e-08 6.55e-08 3.55e-08 4.41e-08 1.33e-07 4.19e-08 7.3e-09 7.91e-08 1.99e-08 1.23e-07 3.86e-09 5.09e-08
ENSG00000284719 AL033527.5 177229 4.03e-06 4.81e-06 8.52e-07 2.95e-06 8.6e-07 1.29e-06 4.13e-06 9.98e-07 3.9e-06 1.69e-06 4.46e-06 2.85e-06 7.42e-06 1.66e-06 1.35e-06 1.99e-06 1.95e-06 2.4e-06 1.33e-06 1.01e-06 1.43e-06 3.97e-06 3.51e-06 1.82e-06 4.92e-06 1.21e-06 2.15e-06 1.49e-06 4.09e-06 3.38e-06 2.54e-06 4.33e-07 7.09e-07 1.83e-06 2.01e-06 8.95e-07 9.31e-07 3.74e-07 1.3e-06 3.47e-07 1.51e-07 4.67e-06 5.11e-07 1.62e-07 2.96e-07 5.87e-07 6.81e-07 2.07e-07 1.76e-07