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Genes within 1Mb (chr1:39976099:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 92588 sc-eQTL 4.13e-01 -0.163 0.198 0.051 B_Activated L2
ENSG00000049089 COL9A2 -341714 sc-eQTL 6.25e-01 -0.0974 0.199 0.051 B_Activated L2
ENSG00000066136 NFYC -715549 sc-eQTL 9.07e-01 -0.0262 0.224 0.051 B_Activated L2
ENSG00000084070 SMAP2 -368751 sc-eQTL 9.25e-01 0.0107 0.113 0.051 B_Activated L2
ENSG00000084072 PPIE 283917 sc-eQTL 3.90e-01 -0.173 0.201 0.051 B_Activated L2
ENSG00000084073 ZMPSTE24 -282137 sc-eQTL 7.53e-01 -0.0673 0.214 0.051 B_Activated L2
ENSG00000090621 PABPC4 399309 sc-eQTL 4.61e-02 -0.326 0.162 0.051 B_Activated L2
ENSG00000116985 BMP8B 187234 sc-eQTL 5.66e-01 -0.067 0.117 0.051 B_Activated L2
ENSG00000117000 RLF -185288 sc-eQTL 7.95e-01 -0.0517 0.198 0.051 B_Activated L2
ENSG00000117010 ZNF684 -555474 sc-eQTL 9.73e-01 -0.00652 0.192 0.051 B_Activated L2
ENSG00000127603 MACF1 894783 sc-eQTL 3.59e-01 -0.163 0.177 0.051 B_Activated L2
ENSG00000131236 CAP1 -64134 sc-eQTL 1.24e-01 -0.281 0.182 0.051 B_Activated L2
ENSG00000131238 PPT1 -121628 sc-eQTL 2.91e-02 -0.49 0.223 0.051 B_Activated L2
ENSG00000164002 EXO5 -532642 sc-eQTL 2.30e-02 -0.388 0.169 0.051 B_Activated L2
ENSG00000168653 NDUFS5 949781 sc-eQTL 7.66e-01 0.0674 0.226 0.051 B_Activated L2
ENSG00000174574 AKIRIN1 984823 sc-eQTL 8.78e-01 0.0331 0.215 0.051 B_Activated L2
ENSG00000179862 CITED4 -886264 sc-eQTL 4.46e-01 -0.126 0.166 0.051 B_Activated L2
ENSG00000187815 ZFP69 -501191 sc-eQTL 2.17e-01 0.226 0.182 0.051 B_Activated L2
ENSG00000198754 OXCT2 204751 sc-eQTL 2.89e-01 -0.192 0.18 0.051 B_Activated L2
ENSG00000259943 AL050341.2 -281868 sc-eQTL 9.53e-01 -0.0103 0.174 0.051 B_Activated L2
ENSG00000272145 NFYC-AS1 -715967 sc-eQTL 6.18e-02 -0.35 0.186 0.051 B_Activated L2
ENSG00000043514 TRIT1 92588 sc-eQTL 1.74e-01 -0.268 0.196 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -341714 sc-eQTL 7.04e-01 -0.0575 0.151 0.05 CD4_CTL L2
ENSG00000066136 NFYC -715549 sc-eQTL 6.67e-01 -0.0895 0.208 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -368751 sc-eQTL 8.08e-01 -0.0328 0.135 0.05 CD4_CTL L2
ENSG00000084072 PPIE 283917 sc-eQTL 3.25e-01 -0.203 0.206 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -282137 sc-eQTL 1.65e-01 0.286 0.205 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 399309 sc-eQTL 5.47e-01 0.115 0.191 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 284614 sc-eQTL 8.36e-01 0.0373 0.179 0.05 CD4_CTL L2
ENSG00000117000 RLF -185288 sc-eQTL 5.35e-01 -0.123 0.197 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -555474 sc-eQTL 4.13e-01 -0.153 0.186 0.05 CD4_CTL L2
ENSG00000127603 MACF1 894783 sc-eQTL 7.13e-02 -0.28 0.154 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -64134 sc-eQTL 1.71e-01 0.183 0.133 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -121628 sc-eQTL 3.33e-01 0.201 0.207 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -532642 sc-eQTL 4.29e-01 0.154 0.195 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 949781 sc-eQTL 6.61e-01 -0.0819 0.187 0.05 CD4_CTL L2
ENSG00000174574 AKIRIN1 984823 sc-eQTL 7.32e-01 0.0673 0.196 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -886264 sc-eQTL 7.51e-01 0.0519 0.163 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -474003 sc-eQTL 7.41e-01 -0.0585 0.177 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -501191 sc-eQTL 2.37e-01 0.227 0.191 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -281868 sc-eQTL 1.50e-02 0.451 0.184 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -715967 sc-eQTL 3.63e-01 -0.177 0.194 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 92588 sc-eQTL 9.07e-01 -0.0243 0.209 0.05 CD8_TEM L2
ENSG00000066136 NFYC -715549 sc-eQTL 1.07e-01 -0.345 0.213 0.05 CD8_TEM L2
ENSG00000084070 SMAP2 -368751 sc-eQTL 7.30e-02 0.267 0.148 0.05 CD8_TEM L2
ENSG00000084072 PPIE 283917 sc-eQTL 6.98e-01 -0.0775 0.2 0.05 CD8_TEM L2
ENSG00000084073 ZMPSTE24 -282137 sc-eQTL 4.48e-01 -0.162 0.213 0.05 CD8_TEM L2
ENSG00000090621 PABPC4 399309 sc-eQTL 2.11e-01 0.255 0.203 0.05 CD8_TEM L2
ENSG00000116983 HPCAL4 284614 sc-eQTL 1.56e-01 -0.248 0.174 0.05 CD8_TEM L2
ENSG00000117000 RLF -185288 sc-eQTL 2.04e-01 -0.22 0.173 0.05 CD8_TEM L2
ENSG00000117010 ZNF684 -555474 sc-eQTL 7.14e-01 0.076 0.207 0.05 CD8_TEM L2
ENSG00000127603 MACF1 894783 sc-eQTL 1.89e-01 -0.22 0.167 0.05 CD8_TEM L2
ENSG00000131236 CAP1 -64134 sc-eQTL 6.28e-02 0.267 0.143 0.05 CD8_TEM L2
ENSG00000131238 PPT1 -121628 sc-eQTL 5.53e-01 -0.128 0.215 0.05 CD8_TEM L2
ENSG00000164002 EXO5 -532642 sc-eQTL 1.53e-01 -0.287 0.2 0.05 CD8_TEM L2
ENSG00000168653 NDUFS5 949781 sc-eQTL 6.27e-01 -0.0942 0.194 0.05 CD8_TEM L2
ENSG00000174574 AKIRIN1 984823 sc-eQTL 1.09e-01 -0.34 0.211 0.05 CD8_TEM L2
ENSG00000179862 CITED4 -886264 sc-eQTL 1.20e-01 -0.302 0.193 0.05 CD8_TEM L2
ENSG00000187801 ZFP69B -474003 sc-eQTL 2.51e-01 0.216 0.188 0.05 CD8_TEM L2
ENSG00000187815 ZFP69 -501191 sc-eQTL 8.61e-02 0.35 0.203 0.05 CD8_TEM L2
ENSG00000259943 AL050341.2 -281868 sc-eQTL 7.60e-01 0.0636 0.208 0.05 CD8_TEM L2
ENSG00000272145 NFYC-AS1 -715967 sc-eQTL 7.21e-02 -0.361 0.2 0.05 CD8_TEM L2
ENSG00000043514 TRIT1 92588 sc-eQTL 5.43e-02 0.405 0.209 0.055 gdT L2
ENSG00000066136 NFYC -715549 sc-eQTL 7.93e-01 -0.0646 0.246 0.055 gdT L2
ENSG00000084070 SMAP2 -368751 sc-eQTL 9.95e-01 -0.00101 0.159 0.055 gdT L2
ENSG00000084072 PPIE 283917 sc-eQTL 5.56e-01 -0.135 0.228 0.055 gdT L2
ENSG00000084073 ZMPSTE24 -282137 sc-eQTL 3.70e-01 0.208 0.231 0.055 gdT L2
ENSG00000090621 PABPC4 399309 sc-eQTL 1.70e-01 0.276 0.2 0.055 gdT L2
ENSG00000116985 BMP8B 187234 sc-eQTL 1.76e-02 -0.452 0.188 0.055 gdT L2
ENSG00000117000 RLF -185288 sc-eQTL 9.46e-02 0.318 0.189 0.055 gdT L2
ENSG00000117010 ZNF684 -555474 sc-eQTL 2.72e-01 -0.242 0.22 0.055 gdT L2
ENSG00000127603 MACF1 894783 sc-eQTL 7.61e-01 -0.0583 0.191 0.055 gdT L2
ENSG00000131236 CAP1 -64134 sc-eQTL 7.75e-01 0.0452 0.158 0.055 gdT L2
ENSG00000131238 PPT1 -121628 sc-eQTL 2.44e-02 0.501 0.22 0.055 gdT L2
ENSG00000164002 EXO5 -532642 sc-eQTL 6.67e-01 -0.0966 0.224 0.055 gdT L2
ENSG00000168389 MFSD2A 20987 sc-eQTL 4.21e-01 0.153 0.19 0.055 gdT L2
ENSG00000168653 NDUFS5 949781 sc-eQTL 1.66e-01 0.288 0.207 0.055 gdT L2
ENSG00000174574 AKIRIN1 984823 sc-eQTL 9.34e-01 -0.0167 0.202 0.055 gdT L2
ENSG00000179862 CITED4 -886264 sc-eQTL 8.50e-01 0.0405 0.214 0.055 gdT L2
ENSG00000187801 ZFP69B -474003 sc-eQTL 1.45e-02 0.506 0.204 0.055 gdT L2
ENSG00000187815 ZFP69 -501191 sc-eQTL 8.55e-01 0.0411 0.225 0.055 gdT L2
ENSG00000198754 OXCT2 204751 sc-eQTL 6.32e-01 -0.0757 0.158 0.055 gdT L2
ENSG00000259943 AL050341.2 -281868 sc-eQTL 7.83e-01 0.0594 0.215 0.055 gdT L2
ENSG00000272145 NFYC-AS1 -715967 sc-eQTL 9.96e-02 0.361 0.218 0.055 gdT L2
ENSG00000043514 TRIT1 92588 sc-eQTL 5.82e-01 0.101 0.183 0.051 pDC L2
ENSG00000049089 COL9A2 -341714 sc-eQTL 5.70e-01 -0.109 0.192 0.051 pDC L2
ENSG00000066136 NFYC -715549 sc-eQTL 4.15e-01 0.183 0.224 0.051 pDC L2
ENSG00000084070 SMAP2 -368751 sc-eQTL 3.33e-01 0.151 0.156 0.051 pDC L2
ENSG00000084072 PPIE 283917 sc-eQTL 4.71e-01 0.163 0.225 0.051 pDC L2
ENSG00000084073 ZMPSTE24 -282137 sc-eQTL 1.77e-01 -0.249 0.184 0.051 pDC L2
ENSG00000090621 PABPC4 399309 sc-eQTL 8.68e-01 -0.0372 0.223 0.051 pDC L2
ENSG00000116990 MYCL 73843 sc-eQTL 9.47e-01 -0.0105 0.159 0.051 pDC L2
ENSG00000117000 RLF -185288 sc-eQTL 1.39e-01 0.317 0.213 0.051 pDC L2
ENSG00000117010 ZNF684 -555474 sc-eQTL 8.63e-01 -0.0356 0.206 0.051 pDC L2
ENSG00000117016 RIMS3 -689583 sc-eQTL 1.47e-01 0.267 0.183 0.051 pDC L2
ENSG00000127603 MACF1 894783 sc-eQTL 2.99e-01 -0.214 0.205 0.051 pDC L2
ENSG00000131236 CAP1 -64134 sc-eQTL 2.94e-01 -0.188 0.178 0.051 pDC L2
ENSG00000131238 PPT1 -121628 sc-eQTL 3.98e-01 0.152 0.18 0.051 pDC L2
ENSG00000164002 EXO5 -532642 sc-eQTL 6.35e-01 0.0873 0.183 0.051 pDC L2
ENSG00000168389 MFSD2A 20987 sc-eQTL 6.26e-01 -0.087 0.178 0.051 pDC L2
ENSG00000168653 NDUFS5 949781 sc-eQTL 5.72e-01 0.101 0.178 0.051 pDC L2
ENSG00000174574 AKIRIN1 984823 sc-eQTL 1.82e-01 -0.257 0.192 0.051 pDC L2
ENSG00000179862 CITED4 -886264 sc-eQTL 7.97e-01 0.046 0.178 0.051 pDC L2
ENSG00000187815 ZFP69 -501191 sc-eQTL 1.90e-01 -0.248 0.188 0.051 pDC L2
ENSG00000198754 OXCT2 204751 sc-eQTL 3.54e-02 -0.401 0.189 0.051 pDC L2
ENSG00000236546 AL033527.2 78354 sc-eQTL 7.29e-01 -0.0625 0.18 0.051 pDC L2
ENSG00000259943 AL050341.2 -281868 sc-eQTL 3.98e-01 0.165 0.195 0.051 pDC L2
ENSG00000272145 NFYC-AS1 -715967 sc-eQTL 5.76e-01 -0.108 0.192 0.051 pDC L2
ENSG00000284719 AL033527.4 176677 sc-eQTL 8.03e-02 -0.319 0.181 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084072 PPIE 283917 eQTL 0.0499 -0.134 0.0681 0.0 0.0 0.0314
ENSG00000131238 PPT1 -121628 eQTL 2.70e-02 0.179 0.0809 0.0 0.0 0.0314
ENSG00000187801 ZFP69B -474008 eQTL 0.014 0.185 0.0753 0.00164 0.0 0.0314
ENSG00000198754 OXCT2 204751 eQTL 0.0139 -0.221 0.0898 0.0 0.0 0.0314
ENSG00000284719 AL033527.5 176677 eQTL 5.01e-06 -0.505 0.11 0.0 0.0 0.0314

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 \N 92588 4.74e-06 5.1e-06 7.29e-07 3.02e-06 1.62e-06 1.5e-06 5.17e-06 9.79e-07 5.15e-06 2.48e-06 6.38e-06 3.18e-06 7.72e-06 1.97e-06 1.35e-06 3.83e-06 1.91e-06 3.69e-06 1.5e-06 1.14e-06 3.15e-06 4.9e-06 4.61e-06 1.35e-06 8.24e-06 1.91e-06 2.43e-06 1.49e-06 4.41e-06 4.8e-06 2.91e-06 5.41e-07 5.51e-07 1.59e-06 1.93e-06 1.18e-06 1.02e-06 4.57e-07 1.04e-06 3.71e-07 5.18e-07 5.67e-06 3.65e-07 1.51e-07 5.01e-07 7.61e-07 1.13e-06 7.36e-07 3.6e-07
ENSG00000179862 \N -886267 2.61e-07 1.11e-07 3.88e-08 1.82e-07 8.83e-08 9.87e-08 1.38e-07 5.33e-08 1.41e-07 4.4e-08 1.56e-07 7.78e-08 1.3e-07 6.38e-08 5.55e-08 7.26e-08 3.88e-08 1.14e-07 5.36e-08 4.21e-08 1.05e-07 1.27e-07 1.26e-07 4.16e-08 1.32e-07 1.14e-07 1.11e-07 9.32e-08 1.03e-07 1.1e-07 9.58e-08 3.94e-08 3.3e-08 8.82e-08 8.98e-08 3.93e-08 5.03e-08 9.22e-08 7.58e-08 3.18e-08 4.35e-08 1.35e-07 4.33e-08 1.1e-08 5.87e-08 1.68e-08 1.19e-07 3.81e-09 4.85e-08
ENSG00000284719 AL033527.5 176677 1.59e-06 2.19e-06 2.31e-07 1.42e-06 4.89e-07 7.87e-07 1.34e-06 3.99e-07 1.74e-06 6.77e-07 1.96e-06 1.44e-06 3.07e-06 8.74e-07 3.95e-07 1.1e-06 1.13e-06 1.32e-06 5.75e-07 7.22e-07 6.41e-07 1.95e-06 1.56e-06 8.39e-07 2.86e-06 9.84e-07 1.04e-06 1.3e-06 1.64e-06 1.64e-06 7.39e-07 2.83e-07 3.99e-07 7.02e-07 9.21e-07 6.84e-07 7.35e-07 3.82e-07 4.69e-07 2.26e-07 2.88e-07 2.7e-06 4.42e-07 1.95e-07 3.55e-07 3.19e-07 4.32e-07 2.34e-07 2.91e-07