Genes within 1Mb (chr1:39888872:C:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 5361 eQTL 1.04e-14 0.168 0.0213 0.0 0.0 0.275
ENSG00000084072 PPIE 196690 pQTL 3.62e-02 -0.0771 0.0368 0.0012 0.0 0.277
ENSG00000084072 PPIE 196690 eQTL 3.12e-03 0.0823 0.0278 0.0 0.0 0.275
ENSG00000116985 BMP8B 100007 eQTL 1.04e-04 -0.127 0.0325 0.0 0.0 0.275
ENSG00000116990 MYCL -13384 eQTL 7.08e-03 -0.0507 0.0188 0.00171 0.0 0.275
ENSG00000127603 MACF1 807556 eQTL 2.66e-02 -0.041 0.0184 0.0 0.0 0.275
ENSG00000131238 PPT1 -208855 eQTL 1.51e-02 0.0804 0.033 0.00762 0.0 0.275
ENSG00000168389 MFSD2A -66240 eQTL 2.63e-02 -0.0441 0.0198 0.0 0.0 0.275
ENSG00000168653 NDUFS5 862554 eQTL 5.03e-03 0.0594 0.0211 0.0 0.0 0.275
ENSG00000187801 ZFP69B -561235 eQTL 1.63e-02 0.074 0.0308 0.00117 0.0 0.275
ENSG00000187815 ZFP69 -588418 eQTL 3.72e-02 0.0498 0.0239 0.0 0.0 0.275
ENSG00000198754 OXCT2 117524 eQTL 3.73e-03 -0.106 0.0366 0.0 0.0 0.275
ENSG00000259943 AL050341.2 -369095 eQTL 4.14e-03 0.0644 0.0224 0.0026 0.0 0.275


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 5361 3.69e-05 3.58e-05 7.19e-06 1.78e-05 7.6e-06 1.82e-05 5.35e-05 6.38e-06 4e-05 1.98e-05 4.86e-05 2.18e-05 6.21e-05 1.73e-05 8.88e-06 2.54e-05 2.17e-05 3.13e-05 1.1e-05 1e-05 2.19e-05 4.07e-05 3.65e-05 1.35e-05 5.6e-05 1.12e-05 1.92e-05 1.61e-05 3.95e-05 4.28e-05 2.59e-05 2.75e-06 4.99e-06 9.72e-06 1.52e-05 8.29e-06 4.83e-06 4.91e-06 7.16e-06 4.35e-06 2.06e-06 4.38e-05 4.5e-06 5.91e-07 3.57e-06 5.28e-06 5.47e-06 2.67e-06 2e-06
ENSG00000084072 PPIE 196690 2.16e-06 2.67e-06 2.7e-07 1.71e-06 4.69e-07 7.89e-07 1.82e-06 6.05e-07 1.74e-06 8.16e-07 2.27e-06 1.3e-06 3.51e-06 1.14e-06 5.75e-07 1.19e-06 9.63e-07 1.93e-06 7.66e-07 1.05e-06 9.23e-07 2.44e-06 2.11e-06 1.03e-06 3.4e-06 1.2e-06 1.2e-06 1.51e-06 1.91e-06 1.84e-06 1.67e-06 2.37e-07 5.85e-07 1.24e-06 9.89e-07 8.7e-07 8.1e-07 4.9e-07 1.05e-06 3.34e-07 1.98e-07 3.35e-06 4.26e-07 1.96e-07 3.29e-07 3.09e-07 4.97e-07 2.23e-07 2.41e-07
ENSG00000116985 BMP8B 100007 5.11e-06 5.1e-06 6.25e-07 3.42e-06 1.65e-06 1.54e-06 7.49e-06 1.1e-06 5e-06 2.76e-06 6.97e-06 3.25e-06 9.02e-06 1.78e-06 1.04e-06 3.78e-06 1.99e-06 3.91e-06 1.47e-06 1.39e-06 2.67e-06 5.41e-06 4.77e-06 1.91e-06 8.57e-06 2.15e-06 2.31e-06 1.78e-06 5.66e-06 5.83e-06 2.65e-06 4.15e-07 7.57e-07 2.22e-06 2.05e-06 1.25e-06 1.07e-06 5e-07 9.23e-07 5.79e-07 7.36e-07 7.06e-06 3.65e-07 1.64e-07 7.66e-07 1.17e-06 1.14e-06 6.85e-07 5.14e-07
ENSG00000131238 PPT1 -208855 1.92e-06 2.42e-06 2.73e-07 1.51e-06 4.43e-07 7.18e-07 1.36e-06 4.99e-07 1.72e-06 7.34e-07 1.96e-06 1.46e-06 3.36e-06 8.7e-07 4.4e-07 1.17e-06 9.51e-07 1.55e-06 6.25e-07 7.55e-07 6.7e-07 2.06e-06 1.79e-06 9.61e-07 2.88e-06 1.1e-06 1.14e-06 1.3e-06 1.84e-06 1.67e-06 1.21e-06 2.77e-07 4.76e-07 1.14e-06 9e-07 6.84e-07 7.27e-07 3.82e-07 8.03e-07 2.23e-07 3.2e-07 2.75e-06 3.37e-07 1.89e-07 3.83e-07 2.95e-07 4.22e-07 2.65e-07 2.9e-07
ENSG00000168389 MFSD2A -66240 7.7e-06 9.31e-06 1.23e-06 4.32e-06 2.25e-06 3.79e-06 1.01e-05 1.75e-06 7.29e-06 4.46e-06 1.07e-05 4.74e-06 1.23e-05 3.8e-06 2.18e-06 5.75e-06 3.96e-06 5.81e-06 2.5e-06 2.63e-06 4.52e-06 7.85e-06 6.81e-06 3.21e-06 1.24e-05 3.09e-06 4.36e-06 3.19e-06 8.87e-06 7.86e-06 4.69e-06 9.02e-07 1.25e-06 2.93e-06 3.5e-06 2.31e-06 1.73e-06 1.84e-06 1.84e-06 1e-06 1.04e-06 1.02e-05 9.28e-07 2.27e-07 7.14e-07 1.47e-06 1.23e-06 7.96e-07 4.55e-07
ENSG00000228477 \N -73808 6.66e-06 8.3e-06 1.04e-06 4.02e-06 2.22e-06 2.96e-06 9.75e-06 1.49e-06 5.94e-06 4.19e-06 9.41e-06 3.9e-06 1.12e-05 3.42e-06 1.69e-06 5.07e-06 3.7e-06 4.4e-06 2.56e-06 2.44e-06 3.73e-06 7.65e-06 6.24e-06 2.82e-06 1.15e-05 2.66e-06 3.6e-06 2.7e-06 7.59e-06 7.78e-06 4.16e-06 8.07e-07 1.12e-06 2.88e-06 2.82e-06 2.1e-06 1.55e-06 1.53e-06 1.57e-06 1.03e-06 1.03e-06 8.83e-06 8.18e-07 2.03e-07 7.72e-07 1.2e-06 9.08e-07 6.94e-07 5.43e-07
ENSG00000284719 \N 89450 5.62e-06 5.93e-06 6.33e-07 3.32e-06 1.74e-06 1.55e-06 8.57e-06 1.18e-06 4.55e-06 3.16e-06 7.96e-06 2.88e-06 1.03e-05 2.18e-06 1e-06 3.9e-06 3e-06 3.76e-06 1.81e-06 1.71e-06 2.66e-06 6.28e-06 4.81e-06 1.91e-06 9.11e-06 2.08e-06 2.68e-06 1.76e-06 6.6e-06 7.04e-06 3.42e-06 4.81e-07 7.23e-07 2.62e-06 1.99e-06 1.63e-06 1.2e-06 6.03e-07 1.38e-06 7.37e-07 8.2e-07 8.39e-06 5.26e-07 1.59e-07 7.75e-07 9.91e-07 9.9e-07 6.12e-07 6.13e-07