Genes within 1Mb (chr1:39868504:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -15007 eQTL 3.52e-04 0.122 0.0341 0.0 0.0 0.0864
ENSG00000084070 SMAP2 -476346 eQTL 3.83e-02 0.0379 0.0183 0.0 0.0 0.0864
ENSG00000084072 PPIE 176322 eQTL 5.32e-02 -0.084 0.0434 0.00125 0.0 0.0864
ENSG00000116985 BMP8B 79639 eQTL 5.60e-12 -0.348 0.0499 0.0 0.0 0.0864
ENSG00000131238 PPT1 -229223 pQTL 4.40e-03 0.166 0.0583 0.00323 0.00139 0.0849
ENSG00000164002 EXO5 -640237 eQTL 1.07e-02 -0.0971 0.038 0.0 0.0 0.0864
ENSG00000179862 CITED4 -993862 eQTL 1.06e-02 -0.123 0.0481 0.0 0.0 0.0864
ENSG00000198754 OXCT2 97156 eQTL 3.22e-15 -0.444 0.0555 0.0 0.0 0.0864
ENSG00000237624 OXCT2P1 353548 eQTL 2.05e-08 0.4 0.0707 0.0 0.0 0.0864
ENSG00000238287 AL603839.3 -640157 eQTL 1.81e-02 0.178 0.075 0.0 0.0 0.0864
ENSG00000261798 AL033527.3 79528 eQTL 5.39e-10 -0.374 0.0596 0.0 0.0 0.0864
ENSG00000272145 NFYC-AS1 -823562 eQTL 1.93e-02 0.143 0.061 0.00134 0.0 0.0864
ENSG00000284719 AL033527.5 69082 eQTL 5.90e-52 -1.01 0.0627 0.0 0.0 0.0864


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -15007 2.1e-05 2.26e-05 4.95e-06 1.28e-05 4.08e-06 1.15e-05 3.18e-05 3.59e-06 2.07e-05 1.07e-05 2.82e-05 1.07e-05 3.8e-05 9.68e-06 5.8e-06 1.3e-05 1.19e-05 1.84e-05 6.95e-06 5.52e-06 1.05e-05 2.31e-05 2.22e-05 7.57e-06 3.39e-05 6.06e-06 9.71e-06 9.24e-06 2.54e-05 2.53e-05 1.34e-05 1.54e-06 2.48e-06 6.67e-06 9.41e-06 5.34e-06 3.09e-06 3.12e-06 4.48e-06 3.3e-06 1.77e-06 2.75e-05 2.67e-06 4.38e-07 2.04e-06 3.2e-06 3.38e-06 1.46e-06 1.46e-06
ENSG00000116985 BMP8B 79639 7.84e-06 9.28e-06 1.29e-06 4.49e-06 2.4e-06 4.01e-06 9.75e-06 1.79e-06 7.72e-06 4.46e-06 1.06e-05 4.98e-06 1.24e-05 3.89e-06 2.19e-06 6.38e-06 3.84e-06 6.22e-06 2.58e-06 2.81e-06 4.72e-06 8.06e-06 6.82e-06 2.8e-06 1.25e-05 3.51e-06 4.74e-06 3.57e-06 8.37e-06 7.95e-06 4.53e-06 9.71e-07 1.21e-06 3.01e-06 3.64e-06 2.7e-06 1.74e-06 2e-06 1.84e-06 9.68e-07 9.91e-07 1.03e-05 1.23e-06 2.71e-07 7.73e-07 1.63e-06 1.25e-06 7.15e-07 4.47e-07
ENSG00000117016 \N -797178 3.27e-07 1.7e-07 7.76e-08 2.25e-07 1.1e-07 8.75e-08 2.24e-07 5.89e-08 1.85e-07 1.03e-07 1.83e-07 1.31e-07 2.38e-07 8e-08 5.97e-08 9.35e-08 5.57e-08 2.15e-07 7.27e-08 6.03e-08 1.27e-07 1.81e-07 1.68e-07 4.07e-08 2.28e-07 1.65e-07 1.25e-07 1.42e-07 1.34e-07 1.17e-07 1.26e-07 4.78e-08 4.86e-08 9.3e-08 5.24e-08 4.77e-08 6.24e-08 6.66e-08 6.35e-08 6.43e-08 5.04e-08 1.59e-07 3.59e-08 2.09e-08 4.36e-08 6.83e-09 7.66e-08 0.0 4.68e-08
ENSG00000198754 OXCT2 97156 6.57e-06 7.92e-06 1.37e-06 3.98e-06 2.06e-06 2.66e-06 9.22e-06 1.46e-06 5.83e-06 3.86e-06 8.89e-06 3.72e-06 1.12e-05 3.18e-06 1.54e-06 5.77e-06 3.62e-06 4.1e-06 2.27e-06 2.41e-06 3.57e-06 7.65e-06 5.58e-06 2.04e-06 1.02e-05 2.82e-06 4.39e-06 2.84e-06 7.04e-06 7.35e-06 3.88e-06 7.89e-07 1.14e-06 2.7e-06 2.69e-06 2.09e-06 1.55e-06 1.66e-06 1.37e-06 1.04e-06 1.03e-06 8.16e-06 9.29e-07 2.27e-07 7.66e-07 1.07e-06 9.05e-07 6.93e-07 4.71e-07
ENSG00000237624 OXCT2P1 353548 1.23e-06 9.34e-07 2.87e-07 9.87e-07 3.43e-07 4.92e-07 1.38e-06 3.82e-07 1.44e-06 4.31e-07 1.65e-06 6.31e-07 2.02e-06 2.76e-07 5.5e-07 9.14e-07 9.2e-07 7.19e-07 8.18e-07 6.49e-07 7.37e-07 1.6e-06 8.96e-07 6.57e-07 2.16e-06 6.17e-07 9.01e-07 7.99e-07 1.35e-06 1.22e-06 6.29e-07 3.05e-07 2.66e-07 6.95e-07 6.22e-07 4.91e-07 7.24e-07 2.74e-07 3.89e-07 3.03e-07 2.88e-07 1.52e-06 1.39e-07 1.74e-07 2.88e-07 1.37e-07 2.16e-07 8.15e-08 2.41e-07
ENSG00000261798 AL033527.3 79528 7.84e-06 9.28e-06 1.29e-06 4.49e-06 2.4e-06 4.01e-06 9.75e-06 1.79e-06 7.72e-06 4.46e-06 1.06e-05 4.98e-06 1.24e-05 3.91e-06 2.19e-06 6.37e-06 3.84e-06 6.22e-06 2.58e-06 2.81e-06 4.68e-06 8.06e-06 6.82e-06 2.8e-06 1.25e-05 3.51e-06 4.74e-06 3.57e-06 8.37e-06 7.95e-06 4.54e-06 9.71e-07 1.21e-06 3.01e-06 3.64e-06 2.7e-06 1.72e-06 1.98e-06 1.84e-06 9.68e-07 9.91e-07 1.03e-05 1.23e-06 2.71e-07 7.73e-07 1.63e-06 1.25e-06 7.15e-07 4.47e-07
ENSG00000272145 NFYC-AS1 -823562 3.21e-07 1.56e-07 6.99e-08 2.24e-07 1.05e-07 8.63e-08 2.1e-07 5.78e-08 1.75e-07 9.35e-08 1.69e-07 1.23e-07 2.29e-07 8e-08 5.69e-08 9.6e-08 5.27e-08 2.04e-07 7.36e-08 5.75e-08 1.24e-07 1.7e-07 1.64e-07 3.59e-08 2.09e-07 1.56e-07 1.29e-07 1.28e-07 1.39e-07 1.05e-07 1.21e-07 4.51e-08 4.34e-08 9.58e-08 4.41e-08 3.94e-08 5.26e-08 7.68e-08 6.62e-08 6.07e-08 5.1e-08 1.55e-07 3.13e-08 2e-08 3.71e-08 6.53e-09 7.26e-08 0.0 4.47e-08
ENSG00000284719 AL033527.5 69082 8.53e-06 9.42e-06 1.44e-06 5.02e-06 2.44e-06 4.17e-06 1.03e-05 2.07e-06 9.27e-06 5.12e-06 1.2e-05 5.26e-06 1.39e-05 3.95e-06 2.6e-06 6.36e-06 4.02e-06 7.37e-06 2.58e-06 2.78e-06 5.16e-06 9.07e-06 7.38e-06 3.21e-06 1.31e-05 3.98e-06 5.21e-06 4.06e-06 9.86e-06 8.01e-06 5.1e-06 1.09e-06 1.2e-06 3.24e-06 4.34e-06 2.77e-06 1.89e-06 1.92e-06 2.19e-06 9.95e-07 9.34e-07 1.2e-05 1.42e-06 2.73e-07 7.6e-07 1.73e-06 1.4e-06 8.24e-07 4.73e-07