Genes within 1Mb (chr1:39799080:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084072 PPIE 106898 eQTL 4.19e-07 -0.206 0.0404 0.0 0.0 0.0922
ENSG00000116954 RRAGC 939308 eQTL 1.14e-02 -0.0827 0.0326 0.0021 0.0 0.0922
ENSG00000116985 BMP8B 10215 eQTL 1.53e-12 -0.336 0.0469 0.0216 0.0226 0.0922
ENSG00000117016 RIMS3 -866602 eQTL 4.20e-02 -0.102 0.0501 0.0 0.0 0.0922
ENSG00000164002 EXO5 -709661 eQTL 1.90e-02 -0.084 0.0358 0.0 0.0 0.0922
ENSG00000198754 OXCT2 27732 eQTL 2.82e-18 -0.461 0.0519 0.0 0.0 0.0922
ENSG00000237624 OXCT2P1 284124 eQTL 1.66e-10 0.428 0.0663 0.0 0.0 0.0922
ENSG00000238287 AL603839.3 -709581 eQTL 9.83e-03 0.183 0.0706 0.0 0.0 0.0922
ENSG00000261798 AL033527.3 10104 eQTL 1.21e-18 -0.495 0.055 0.0165 0.0165 0.0922
ENSG00000284719 AL033527.5 -342 eQTL 7.88e-101 -1.27 0.0525 0.0161 0.0419 0.0922


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084072 PPIE 106898 7.79e-06 9.64e-06 7.3e-07 4.11e-06 1.54e-06 3.41e-06 8.6e-06 1.28e-06 6.04e-06 3.42e-06 8.96e-06 4.44e-06 1.21e-05 3.14e-06 1.7e-06 4.07e-06 3.75e-06 3.8e-06 1.65e-06 1.55e-06 2.77e-06 7.55e-06 5.61e-06 1.86e-06 1.08e-05 2.06e-06 2.79e-06 1.8e-06 5.45e-06 6.62e-06 4.13e-06 4.88e-07 4.82e-07 1.81e-06 3.55e-06 1.33e-06 1.01e-06 4.82e-07 1.32e-06 7.28e-07 4.03e-07 9.16e-06 6.74e-07 1.69e-07 3.41e-07 1.06e-06 1.06e-06 5.05e-07 3.18e-07
ENSG00000116954 RRAGC 939308 2.67e-07 1.5e-07 4.08e-08 2.26e-07 9.87e-08 9.91e-08 1.61e-07 5.43e-08 1.5e-07 5.67e-08 1.62e-07 9.19e-08 1.95e-07 8.13e-08 5.82e-08 7.36e-08 4.18e-08 1.33e-07 7.12e-08 5.2e-08 1.26e-07 1.26e-07 1.44e-07 2.64e-08 1.55e-07 1.21e-07 1.07e-07 1.01e-07 1.12e-07 1e-07 1.09e-07 3.84e-08 3.56e-08 8.56e-08 4.92e-08 2.69e-08 6.39e-08 8.63e-08 6.49e-08 6.31e-08 5.43e-08 1.46e-07 5.2e-08 7.3e-09 4.67e-08 1.86e-08 1.24e-07 3.79e-09 4.9e-08
ENSG00000116985 BMP8B 10215 2.69e-05 2.91e-05 3.51e-06 1.32e-05 3.29e-06 1.04e-05 2.95e-05 3.5e-06 2.19e-05 1.03e-05 2.86e-05 1.11e-05 3.83e-05 9.56e-06 5.53e-06 1.14e-05 1.19e-05 1.77e-05 6.14e-06 4.54e-06 9.17e-06 2.24e-05 2.29e-05 5.86e-06 3.43e-05 5.36e-06 8.36e-06 8.11e-06 2.14e-05 1.78e-05 1.51e-05 1.27e-06 1.55e-06 4.4e-06 9.27e-06 4.48e-06 2.02e-06 2.71e-06 3.48e-06 2.33e-06 1.14e-06 3.06e-05 2.66e-06 2.62e-07 1.35e-06 2.69e-06 3.25e-06 1.26e-06 9.94e-07
ENSG00000117016 RIMS3 -866602 2.77e-07 1.7e-07 4.91e-08 2.35e-07 9.82e-08 8.33e-08 1.73e-07 5.43e-08 1.54e-07 6.75e-08 1.76e-07 1.08e-07 2.38e-07 8.07e-08 5.36e-08 7.23e-08 4.31e-08 1.51e-07 7.39e-08 6.16e-08 1.27e-07 1.39e-07 1.58e-07 2.83e-08 1.68e-07 1.26e-07 1.13e-07 1.12e-07 1.23e-07 1.06e-07 1.22e-07 4.77e-08 3.96e-08 9.3e-08 3.07e-08 2.79e-08 7.97e-08 8.68e-08 5.78e-08 7.78e-08 4.92e-08 1.59e-07 5.27e-08 1.56e-08 3.42e-08 1.77e-08 1.21e-07 1.88e-09 5.01e-08
ENSG00000127603 \N 717764 3.62e-07 3.12e-07 6.15e-08 3.19e-07 1.02e-07 1.03e-07 2.63e-07 5.84e-08 2.26e-07 1.15e-07 3.32e-07 1.52e-07 4.54e-07 9.15e-08 9.33e-08 9.6e-08 8.74e-08 2.21e-07 9.71e-08 7.29e-08 1.39e-07 2.09e-07 1.89e-07 3.27e-08 2.59e-07 1.43e-07 1.29e-07 1.52e-07 1.39e-07 2e-07 1.93e-07 8.14e-08 3.56e-08 9.98e-08 1.01e-07 5.04e-08 1.01e-07 6.66e-08 5.54e-08 5.54e-08 5.04e-08 2.41e-07 3.02e-08 1.87e-08 3.4e-08 6.98e-09 1.11e-07 2.1e-09 4.94e-08
ENSG00000198754 OXCT2 27732 1.51e-05 1.92e-05 1.89e-06 8.75e-06 2.44e-06 6.33e-06 1.64e-05 2.44e-06 1.42e-05 6.27e-06 1.82e-05 7.34e-06 2.55e-05 5.19e-06 4.5e-06 7.43e-06 7.72e-06 1.07e-05 3.6e-06 2.92e-06 6.39e-06 1.28e-05 1.34e-05 3.52e-06 2.48e-05 4.33e-06 6.68e-06 4.8e-06 1.33e-05 1.14e-05 1.06e-05 9.59e-07 1.28e-06 3.36e-06 6.48e-06 2.82e-06 1.83e-06 2e-06 2.2e-06 9.85e-07 9.12e-07 1.92e-05 1.6e-06 1.97e-07 7.34e-07 2.01e-06 1.73e-06 7.39e-07 4.57e-07
ENSG00000237624 OXCT2P1 284124 2.21e-06 2.62e-06 2.18e-07 1.83e-06 4.92e-07 8.03e-07 1.31e-06 4.45e-07 1.76e-06 7.18e-07 2.21e-06 1.48e-06 3.49e-06 1.13e-06 8.18e-07 1.06e-06 1.18e-06 1.33e-06 6.25e-07 9.52e-07 6.02e-07 2.32e-06 1.87e-06 1.02e-06 2.69e-06 8.9e-07 9.86e-07 1.04e-06 1.79e-06 1.72e-06 1.73e-06 2.77e-07 3.24e-07 6.13e-07 1.02e-06 6.58e-07 7.76e-07 3.65e-07 1.03e-06 3.75e-07 2.58e-07 2.88e-06 4.42e-07 1.74e-07 1.65e-07 3.28e-07 2.42e-07 1.49e-07 1.6e-07
ENSG00000261798 AL033527.3 10104 2.69e-05 2.91e-05 3.55e-06 1.32e-05 3.33e-06 1.05e-05 2.99e-05 3.5e-06 2.19e-05 1.04e-05 2.86e-05 1.13e-05 3.85e-05 9.68e-06 5.6e-06 1.15e-05 1.2e-05 1.77e-05 6.26e-06 4.62e-06 9.17e-06 2.24e-05 2.31e-05 5.86e-06 3.46e-05 5.39e-06 8.36e-06 8.11e-06 2.14e-05 1.81e-05 1.51e-05 1.27e-06 1.57e-06 4.4e-06 9.27e-06 4.49e-06 2.04e-06 2.73e-06 3.52e-06 2.38e-06 1.16e-06 3.06e-05 2.67e-06 2.62e-07 1.38e-06 2.69e-06 3.25e-06 1.3e-06 1.02e-06
ENSG00000284719 AL033527.5 -342 0.000193 0.000198 3.74e-05 8.07e-05 3.82e-05 7.52e-05 0.00023 3.34e-05 0.000173 0.000107 0.000237 0.000101 0.000267 8.09e-05 4.12e-05 0.000138 8.68e-05 0.000151 4.96e-05 3.9e-05 0.000115 0.000206 0.000184 6.45e-05 0.000248 6.74e-05 0.000107 6.4e-05 0.000185 0.000105 0.000118 8.88e-06 1.48e-05 3.72e-05 5.46e-05 2.73e-05 2.17e-05 1.57e-05 2.5e-05 1.29e-05 1.02e-05 0.000225 2.41e-05 2.04e-06 2.08e-05 2.58e-05 2.57e-05 1.04e-05 1.16e-05