Genes within 1Mb (chr1:39776590:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -106921 eQTL 7.21e-07 0.106 0.0212 0.00106 0.0 0.279
ENSG00000084072 PPIE 84408 eQTL 1.50e-69 0.442 0.0231 0.00158 0.0 0.279
ENSG00000090621 PABPC4 199800 eQTL 1.93e-02 0.0257 0.011 0.0 0.0 0.279
ENSG00000116954 RRAGC 916818 eQTL 2.26e-02 0.0495 0.0217 0.00163 0.0 0.279
ENSG00000116985 BMP8B -12275 eQTL 1.04e-35 -0.383 0.0294 0.0 0.0445 0.279
ENSG00000116990 MYCL -125666 eQTL 9.92e-04 -0.0603 0.0183 0.00471 0.00272 0.279
ENSG00000168389 MFSD2A -178522 eQTL 4.16e-02 -0.0394 0.0193 0.0 0.0 0.279
ENSG00000168653 NDUFS5 750272 eQTL 3.98e-02 -0.0425 0.0206 0.0 0.0 0.279
ENSG00000183682 BMP8A 284954 eQTL 6.24e-03 -0.079 0.0288 0.0 0.0 0.279
ENSG00000198754 OXCT2 5242 eQTL 1.74e-02 -0.0851 0.0357 0.0 0.0 0.279
ENSG00000238287 AL603839.3 -732071 eQTL 4.88e-02 0.0926 0.0469 0.0 0.0 0.279
ENSG00000261798 AL033527.3 -12386 eQTL 2.54e-04 0.139 0.0378 0.0 0.0 0.279


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -106921 1.1e-05 5.82e-06 7.66e-07 3.06e-06 8.74e-07 2.48e-06 5.27e-06 8.92e-07 3.58e-06 2.33e-06 4.32e-06 2.65e-06 7.47e-06 2.04e-06 1.04e-06 3.85e-06 2.06e-06 3.49e-06 1.45e-06 1e-06 2.66e-06 4.79e-06 4.55e-06 1.65e-06 8.16e-06 1.24e-06 2.27e-06 1.65e-06 4.58e-06 4.14e-06 1.95e-06 3.45e-07 7.75e-07 1.68e-06 2.09e-06 9.02e-07 7.72e-07 4.03e-07 1.34e-06 4.27e-07 1.83e-07 8.06e-06 1.28e-06 1.06e-07 4.01e-07 3.56e-07 8.16e-07 2.41e-07 3.21e-07
ENSG00000084072 PPIE 84408 1.39e-05 8.28e-06 6.9e-07 3.81e-06 1.43e-06 4.1e-06 8.17e-06 1.04e-06 5.13e-06 2.82e-06 6.04e-06 3.33e-06 8.29e-06 2.24e-06 1.3e-06 4.34e-06 1.92e-06 3.67e-06 1.48e-06 1.39e-06 2.71e-06 5.49e-06 4.69e-06 1.55e-06 9.75e-06 1.81e-06 3.39e-06 2.27e-06 5.81e-06 4.87e-06 2.77e-06 5.93e-07 4.86e-07 2.34e-06 1.97e-06 8.84e-07 9.41e-07 4.52e-07 8.94e-07 6.22e-07 2.39e-07 8.83e-06 1.39e-06 1.41e-07 5.64e-07 9.16e-07 9.92e-07 2.07e-07 3.29e-07
ENSG00000090621 PABPC4 199800 4.81e-06 2.62e-06 2.43e-07 1.43e-06 3.47e-07 8.41e-07 1.33e-06 4.04e-07 1.74e-06 7.36e-07 2.01e-06 9.29e-07 2.72e-06 8.66e-07 9.53e-07 1.06e-06 1.04e-06 1.3e-06 7.29e-07 6.26e-07 7.67e-07 1.99e-06 1.77e-06 5.94e-07 3.07e-06 6.95e-07 1.21e-06 1.4e-06 1.72e-06 1.36e-06 8.13e-07 1.54e-07 3.22e-07 8.93e-07 9.17e-07 4.89e-07 4.77e-07 1.23e-07 4.72e-07 2.17e-07 3.17e-07 3.43e-06 4.34e-07 1.28e-08 2.87e-07 2.36e-07 2.24e-07 8.18e-08 2.8e-07
ENSG00000116985 BMP8B -12275 4.93e-05 2.41e-05 3.05e-06 1.27e-05 3.33e-06 1.32e-05 2.91e-05 3.33e-06 1.85e-05 1.03e-05 2.37e-05 9.08e-06 3.48e-05 8.95e-06 5.88e-06 1.25e-05 1.13e-05 2.16e-05 5.66e-06 4.69e-06 9.81e-06 2.22e-05 2.27e-05 6.36e-06 3.23e-05 5.48e-06 8.89e-06 9e-06 2.04e-05 1.93e-05 1.25e-05 1.27e-06 1.73e-06 5.21e-06 8.41e-06 3.73e-06 1.77e-06 2.49e-06 3.2e-06 2.44e-06 1.11e-06 2.92e-05 3.38e-06 1.79e-07 1.97e-06 2.84e-06 3.25e-06 8.41e-07 9.57e-07
ENSG00000116990 MYCL -125666 9.21e-06 5.1e-06 6.25e-07 2.44e-06 6.13e-07 1.54e-06 3.71e-06 8.93e-07 2.44e-06 1.66e-06 3.52e-06 1.74e-06 6.4e-06 2.16e-06 1.43e-06 2.63e-06 1.75e-06 2.77e-06 1.49e-06 9.73e-07 1.81e-06 4.05e-06 3.42e-06 1.66e-06 6.24e-06 1.02e-06 2.51e-06 1.73e-06 4.32e-06 3.06e-06 1.98e-06 2.48e-07 6.63e-07 1.9e-06 2.03e-06 1.01e-06 7.33e-07 3.65e-07 1.18e-06 4.17e-07 3.16e-07 6.29e-06 8.6e-07 8.04e-08 3.13e-07 3.6e-07 8.02e-07 2.44e-07 1.92e-07
ENSG00000117000 \N -384797 1.2e-06 7.46e-07 7.97e-08 3.58e-07 1.03e-07 3.2e-07 5.8e-07 8.11e-08 2.78e-07 2.06e-07 4.74e-07 3.08e-07 7.36e-07 1.34e-07 4.03e-07 2.14e-07 2.07e-07 3.58e-07 1.27e-07 1.63e-07 1.65e-07 3.87e-07 3.87e-07 1.06e-07 8.99e-07 2e-07 3.93e-07 2.73e-07 3.83e-07 4.27e-07 1.95e-07 5.24e-08 5.31e-08 1.57e-07 3.07e-07 5.2e-08 6.87e-08 7.49e-08 4.72e-08 2.77e-08 4.83e-08 8.03e-07 6.21e-08 7.28e-09 7.89e-08 1.78e-08 8.93e-08 0.0 6.03e-08
ENSG00000168389 MFSD2A -178522 5.72e-06 3.49e-06 2.88e-07 1.74e-06 3.55e-07 1.03e-06 1.87e-06 3.99e-07 1.74e-06 7.34e-07 1.88e-06 1.26e-06 3.44e-06 1.43e-06 9.04e-07 1.49e-06 9.22e-07 1.89e-06 5.59e-07 9.54e-07 6.35e-07 2.61e-06 2.22e-06 9.49e-07 4.03e-06 8.08e-07 1.44e-06 1.79e-06 1.91e-06 1.64e-06 7.39e-07 2.08e-07 3.7e-07 1.23e-06 1.02e-06 5.46e-07 6.41e-07 2.04e-07 4.85e-07 3.35e-07 2.89e-07 4.03e-06 4.2e-07 2.66e-08 3.83e-07 3.44e-07 2.28e-07 2.77e-08 2.47e-07
ENSG00000198754 OXCT2 5242 4.56e-05 3.04e-05 5.5e-06 1.5e-05 5.29e-06 1.5e-05 4.17e-05 4.07e-06 2.76e-05 1.45e-05 3.39e-05 1.48e-05 4.46e-05 1.27e-05 6.84e-06 1.75e-05 1.61e-05 2.59e-05 7.46e-06 6.05e-06 1.42e-05 3.03e-05 3.06e-05 8.51e-06 4.09e-05 7.46e-06 1.28e-05 1.18e-05 2.91e-05 2.41e-05 1.73e-05 1.54e-06 2.42e-06 6.69e-06 1.06e-05 5.04e-06 2.76e-06 2.99e-06 4.29e-06 3.14e-06 1.67e-06 3.66e-05 3.8e-06 2.62e-07 2.3e-06 3.36e-06 3.88e-06 1.4e-06 1.51e-06
ENSG00000261798 AL033527.3 -12386 4.85e-05 2.37e-05 3.07e-06 1.27e-05 3.28e-06 1.32e-05 2.88e-05 3.33e-06 1.85e-05 1.02e-05 2.33e-05 8.87e-06 3.45e-05 8.95e-06 5.88e-06 1.25e-05 1.13e-05 2.16e-05 5.56e-06 4.62e-06 9.81e-06 2.22e-05 2.24e-05 6.36e-06 3.23e-05 5.47e-06 8.84e-06 9e-06 2.04e-05 1.91e-05 1.25e-05 1.22e-06 1.73e-06 5.15e-06 8.27e-06 3.73e-06 1.78e-06 2.43e-06 3.22e-06 2.44e-06 1.12e-06 2.92e-05 3.39e-06 1.75e-07 1.97e-06 2.84e-06 3.25e-06 8.55e-07 9.39e-07