Genes within 1Mb (chr1:39739151:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000043514 TRIT1 -144360 eQTL 2.50e-04 0.0795 0.0216 0.0 0.0 0.235
ENSG00000049089 COL9A2 -578135 eQTL 7.69e-03 0.0673 0.0252 0.00305 0.0 0.235
ENSG00000084072 PPIE 46969 eQTL 1.63e-209 0.676 0.0167 0.0597 0.128 0.235
ENSG00000090621 PABPC4 162361 eQTL 1.53e-02 0.0271 0.0111 0.0 0.0 0.235
ENSG00000116985 BMP8B -49714 eQTL 4.93e-21 -0.298 0.0309 0.0 0.0 0.235
ENSG00000116990 MYCL -163105 eQTL 3.03e-02 -0.0404 0.0186 0.0 0.0 0.235
ENSG00000168389 MFSD2A -215961 eQTL 3.84e-02 -0.0406 0.0196 0.0 0.0 0.235
ENSG00000198754 OXCT2 -32197 eQTL 2.55e-07 -0.186 0.0358 0.0429 0.0 0.235
ENSG00000261798 AL033527.3 -49825 eQTL 4.21e-04 0.136 0.0384 0.0 0.0 0.235
ENSG00000284719 AL033527.5 -60271 eQTL 4.31e-01 -0.0354 0.0449 0.0172 0.0 0.235


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000043514 TRIT1 -144360 0.000131 0.000167 6.07e-05 0.000104 8.31e-05 9.4e-05 0.000258 9.7e-05 0.000308 0.000215 0.000368 0.000151 0.000369 9.38e-05 7.14e-05 0.000218 0.000136 0.000227 7.99e-05 7.8e-05 0.000217 0.000279 0.000198 8.11e-05 0.000334 0.000121 0.000174 0.000161 0.000244 7.7e-05 0.000194 3.98e-05 4.83e-05 7.76e-05 8.37e-05 5.93e-05 5.35e-05 4.84e-05 5.01e-05 8.44e-05 2.77e-05 0.000144 2.8e-05 6.25e-06 4.25e-05 5.51e-05 6.22e-05 5.18e-05 2.96e-05
ENSG00000049089 COL9A2 -578135 1.63e-06 3.13e-06 2.63e-06 3.06e-06 1.53e-06 1.33e-06 2.95e-06 1.55e-06 4.75e-06 4.76e-06 5.73e-06 3.41e-06 7.51e-06 1.42e-06 9.81e-07 3.58e-06 3e-06 3.71e-06 1.41e-06 1.19e-06 3.2e-06 5.44e-06 3.4e-06 1.62e-06 4.29e-06 2.16e-06 3.61e-06 1.74e-06 3.82e-06 2.37e-06 2.89e-06 8.65e-07 7.57e-07 1.84e-06 2.19e-06 2.9e-06 1.76e-06 1.85e-06 1.57e-06 4.01e-06 1.01e-06 2.12e-06 6.82e-07 2.8e-07 9.48e-07 1.31e-06 2.03e-06 8.94e-07 2.01e-07
ENSG00000084072 PPIE 46969 0.000175 0.00026 6.39e-05 0.000125 0.000124 0.000122 0.00037 0.00012 0.00035 0.000258 0.000414 0.000182 0.00042 0.000145 9.08e-05 0.000256 0.00016 0.00027 0.000109 9.36e-05 0.000239 0.000348 0.00028 0.0001 0.000401 0.000145 0.000205 0.00019 0.00031 0.000126 0.00022 4.96e-05 7.43e-05 8.93e-05 0.00011 6.78e-05 7.22e-05 7.19e-05 5.89e-05 0.000111 3.49e-05 0.000286 4e-05 7.95e-06 4.78e-05 6.81e-05 7.04e-05 7.89e-05 4e-05
ENSG00000084073 \N -519085 2.75e-06 4.75e-06 3.99e-06 3.75e-06 1.46e-06 1.5e-06 5.17e-06 2.15e-06 7.77e-06 6.03e-06 8.54e-06 3.31e-06 1.06e-05 2.39e-06 2.06e-06 4.41e-06 3.85e-06 3.75e-06 1.43e-06 2.02e-06 4.99e-06 7.66e-06 3.72e-06 1.56e-06 5.16e-06 2.78e-06 4.81e-06 2.82e-06 4.46e-06 3.38e-06 3.46e-06 9.97e-07 1.14e-06 2.79e-06 1.98e-06 4.22e-06 1.76e-06 1.98e-06 2.08e-06 5.13e-06 1.25e-06 2.78e-06 1.14e-06 4.43e-07 1.78e-06 1.73e-06 3.39e-06 1.51e-06 3.35e-07
ENSG00000090621 PABPC4 162361 0.000107 0.000134 5.94e-05 9.43e-05 6.9e-05 7.66e-05 0.000208 8.61e-05 0.000279 0.000202 0.000324 0.000122 0.000327 7.46e-05 5.97e-05 0.000198 0.00012 0.000203 6.62e-05 6.86e-05 0.000193 0.000246 0.000168 7.19e-05 0.00029 0.000104 0.000154 0.00014 0.000206 6.37e-05 0.000175 3.38e-05 4.09e-05 7.16e-05 7.42e-05 5.56e-05 4.39e-05 4.16e-05 4.54e-05 7.18e-05 2.43e-05 0.000109 2.34e-05 6e-06 3.95e-05 4.81e-05 5.8e-05 4.13e-05 2.41e-05
ENSG00000116985 BMP8B -49714 0.000175 0.000265 6.5e-05 0.000125 0.000127 0.000123 0.00037 0.000124 0.00035 0.000258 0.000414 0.000184 0.000422 0.000145 9.17e-05 0.000256 0.00016 0.00027 0.00011 9.36e-05 0.000239 0.000352 0.00028 0.0001 0.000405 0.000146 0.000205 0.000192 0.000312 0.000126 0.000221 5.15e-05 7.59e-05 9.18e-05 0.00011 6.83e-05 7.45e-05 7.5e-05 5.89e-05 0.000111 3.67e-05 0.000286 4e-05 7.98e-06 4.83e-05 6.96e-05 7.1e-05 7.89e-05 4e-05
ENSG00000117000 \N -422236 4.51e-06 7.69e-06 6.99e-06 7.29e-06 2.58e-06 3.88e-06 9.62e-06 3.93e-06 1.65e-05 1.33e-05 1.5e-05 5.44e-06 2.06e-05 3.47e-06 4.18e-06 6.93e-06 7.74e-06 8.54e-06 2.67e-06 3.27e-06 8.21e-06 1.21e-05 5.82e-06 2.76e-06 1.03e-05 4.5e-06 7.99e-06 5.79e-06 8.7e-06 5.27e-06 7.63e-06 1.61e-06 1.65e-06 3.99e-06 4.55e-06 7.48e-06 3.49e-06 2.96e-06 3.98e-06 1.1e-05 1.86e-06 4.86e-06 1.87e-06 7.55e-07 2.86e-06 2.85e-06 6.32e-06 2.7e-06 4.78e-07
ENSG00000168389 MFSD2A -215961 4.47e-05 6.27e-05 4.73e-05 5.19e-05 2.84e-05 3.84e-05 0.000101 5.65e-05 0.000165 0.00016 0.000183 5.73e-05 0.000191 3.61e-05 3.1e-05 9.84e-05 7.41e-05 0.000104 2.66e-05 4.28e-05 0.000117 0.000139 7.3e-05 3.33e-05 0.000148 5.06e-05 8.48e-05 6.97e-05 0.000108 3.09e-05 9.51e-05 2.21e-05 2.83e-05 5.28e-05 3.48e-05 4.36e-05 3.17e-05 2.85e-05 2.41e-05 4.72e-05 1.88e-05 4.63e-05 1.56e-05 4.85e-06 2.42e-05 2.96e-05 4.26e-05 2.58e-05 1.27e-05
ENSG00000198754 OXCT2 -32197 0.000171 0.000242 6.06e-05 0.000122 0.000112 0.000117 0.000353 0.000104 0.000334 0.000235 0.000403 0.000173 0.000402 0.000132 8.76e-05 0.000252 0.000151 0.00026 0.000102 8.44e-05 0.000232 0.000333 0.000266 9.83e-05 0.00039 0.000135 0.000195 0.000179 0.000298 0.000122 0.000211 4.41e-05 6.61e-05 8.41e-05 0.000103 6.35e-05 6.57e-05 6.33e-05 5.6e-05 9e-05 3.32e-05 0.000277 3.7e-05 7.39e-06 4.42e-05 6.34e-05 6.54e-05 6.33e-05 3.39e-05
ENSG00000261798 AL033527.3 -49825 0.000175 0.000265 6.5e-05 0.000125 0.000127 0.000123 0.00037 0.000124 0.00035 0.000258 0.000414 0.000184 0.000422 0.000145 9.17e-05 0.000256 0.00016 0.00027 0.00011 9.36e-05 0.000239 0.000352 0.00028 0.0001 0.000405 0.000146 0.000205 0.000192 0.000312 0.000126 0.000221 5.15e-05 7.59e-05 9.18e-05 0.00011 6.83e-05 7.45e-05 7.5e-05 5.89e-05 0.000111 3.67e-05 0.000286 4e-05 7.98e-06 4.83e-05 6.96e-05 7.1e-05 7.89e-05 4e-05