Genes within 1Mb (chr1:39613243:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084070 SMAP2 -731607 eQTL 1.63e-02 0.0259 0.0108 0.0 0.0 0.268
ENSG00000084072 PPIE -78939 eQTL 7.67e-01 -0.00759 0.0256 0.00105 0.0 0.268
ENSG00000090621 PABPC4 36453 eQTL 7.14e-23 0.0997 0.00987 0.0127 0.0151 0.268
ENSG00000116983 HPCAL4 -78242 eQTL 4.86e-02 0.0305 0.0154 0.0 0.0 0.268
ENSG00000116985 BMP8B -175622 eQTL 3.07e-02 -0.0651 0.0301 0.0 0.0 0.268
ENSG00000116990 MYCL -289013 eQTL 5.49e-03 -0.048 0.0173 0.00256 0.0 0.268
ENSG00000131238 PPT1 -484484 eQTL 3.76e-02 0.0632 0.0303 0.0 0.0 0.268
ENSG00000168653 NDUFS5 586925 eQTL 1.65e-06 -0.0929 0.0193 0.0 0.0 0.268
ENSG00000183682 BMP8A 121607 eQTL 6.50e-12 -0.185 0.0266 0.0141 0.0131 0.268
ENSG00000187801 ZFP69B -836864 eQTL 3.52e-02 -0.0597 0.0283 0.0 0.0 0.268
ENSG00000228436 AL139260.1 753243 eQTL 5.42e-02 0.0841 0.0436 0.00106 0.0 0.268
ENSG00000243970 PPIEL 53572 eQTL 8.26e-11 -0.176 0.0268 0.00102 0.00918 0.268
ENSG00000259943 AL050341.2 -644724 eQTL 5.25e-03 -0.0576 0.0206 0.0 0.0 0.268
ENSG00000260920 AL031985.3 -851076 eQTL 2.08e-02 -0.0593 0.0256 0.0 0.0 0.268


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000090621 PABPC4 36453 9.93e-06 1.23e-05 1.35e-06 6.69e-06 2.44e-06 4.19e-06 1.17e-05 2.17e-06 9.7e-06 5.16e-06 1.24e-05 5.59e-06 1.62e-05 3.6e-06 3.46e-06 6.97e-06 4.31e-06 7.75e-06 2.58e-06 2.74e-06 4.6e-06 1.02e-05 9.05e-06 3.24e-06 1.85e-05 3.8e-06 5.33e-06 3.97e-06 1.04e-05 8.74e-06 5.4e-06 9.62e-07 1.07e-06 3.06e-06 5.12e-06 2.53e-06 1.57e-06 1.75e-06 2.14e-06 1.02e-06 8.93e-07 1.58e-05 1.39e-06 2.01e-07 6.78e-07 1.76e-06 1.25e-06 7.83e-07 4.55e-07
ENSG00000168653 NDUFS5 586925 4.68e-07 3.23e-07 7.6e-08 2.87e-07 1.02e-07 1.08e-07 3.25e-07 5.89e-08 2.04e-07 1.11e-07 2.47e-07 1.62e-07 3.95e-07 8.55e-08 6.53e-08 1.14e-07 6.63e-08 2.56e-07 8.68e-08 6.73e-08 1.23e-07 2.07e-07 2.11e-07 3.83e-08 4.46e-07 1.71e-07 1.48e-07 1.47e-07 1.48e-07 2.02e-07 1.52e-07 4.93e-08 4.16e-08 9.09e-08 1.31e-07 2.74e-08 6.2e-08 6.78e-08 4.99e-08 7.04e-08 4.68e-08 2.43e-07 3.13e-08 1.27e-08 3.32e-08 1.01e-08 7.13e-08 0.0 4.72e-08
ENSG00000183682 BMP8A 121607 4.36e-06 5e-06 5.1e-07 2.61e-06 8e-07 1.03e-06 3.07e-06 1.01e-06 3.32e-06 1.62e-06 4.16e-06 2.74e-06 6.78e-06 2.19e-06 1.3e-06 2.78e-06 1.79e-06 2.87e-06 1.56e-06 1.39e-06 1.45e-06 4.07e-06 3.31e-06 1.66e-06 6.64e-06 1.14e-06 2.18e-06 1.72e-06 3.87e-06 3.81e-06 2.01e-06 4.33e-07 5.69e-07 1.78e-06 1.97e-06 8.93e-07 8.89e-07 4.65e-07 1.07e-06 3.82e-07 1.96e-07 5.74e-06 5.11e-07 1.69e-07 3.21e-07 3.21e-07 8.12e-07 2.54e-07 1.56e-07
ENSG00000243970 PPIEL 53572 7.62e-06 9.37e-06 8.29e-07 4.79e-06 1.76e-06 3.05e-06 9.57e-06 1.54e-06 6.18e-06 4.12e-06 1.01e-05 4.49e-06 1.16e-05 3.89e-06 2.22e-06 6.29e-06 3.77e-06 4.99e-06 1.87e-06 1.6e-06 2.8e-06 7.66e-06 6.78e-06 1.96e-06 1.31e-05 2.42e-06 4.39e-06 2.38e-06 6.99e-06 7.74e-06 4.06e-06 5.86e-07 7.22e-07 2.73e-06 3.69e-06 1.78e-06 1.01e-06 5.61e-07 1.6e-06 8.7e-07 7.69e-07 1.24e-05 9.02e-07 1.61e-07 7.74e-07 1.03e-06 1.04e-06 6.21e-07 5.81e-07