Genes within 1Mb (chr1:39599289:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000090621 PABPC4 22499 eQTL 6.00e-25 -0.141 0.0132 0.0 0.0 0.137
ENSG00000116983 HPCAL4 -92196 eQTL 2.96e-05 -0.0868 0.0207 0.0 0.0 0.137
ENSG00000127603 MACF1 517973 eQTL 2.22e-02 0.0524 0.0229 0.0 0.0 0.137
ENSG00000168653 NDUFS5 572971 eQTL 3.54e-03 0.0766 0.0262 0.0 0.0 0.137
ENSG00000183682 BMP8A 107653 eQTL 3.69e-10 0.228 0.0361 0.0 0.0 0.137
ENSG00000187815 ZFP69 -878001 eQTL 2.76e-02 0.0652 0.0296 0.0 0.0 0.137
ENSG00000228477 AL663070.1 -363391 eQTL 1.39e-02 0.0891 0.0362 0.00172 0.0 0.137
ENSG00000237624 OXCT2P1 84333 eQTL 6.53e-07 0.283 0.0564 0.0019 0.00195 0.137
ENSG00000243970 PPIEL 39618 eQTL 4.57e-15 0.285 0.0358 0.0 0.0 0.137
ENSG00000260920 AL031985.3 -865030 eQTL 4.38e-02 0.0698 0.0346 0.0 0.0 0.137


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084072 \N -92893 5.49e-06 9.23e-06 1.21e-06 2.96e-06 1.06e-06 1.35e-06 4.13e-06 3.9e-07 5.13e-06 1.83e-06 7.6e-06 3.22e-06 7.12e-06 2.07e-06 1.21e-06 3.81e-06 4.55e-06 4.03e-06 1.49e-06 1.26e-06 2.77e-06 4.86e-06 2.87e-06 1.71e-06 8.24e-06 1.72e-06 1.8e-06 1.55e-06 4.23e-06 4.67e-06 2.65e-06 1.55e-07 6.23e-07 1.49e-06 2.1e-06 1.12e-06 1e-06 4.46e-07 1.05e-06 2.37e-07 2.56e-07 6.29e-06 4.93e-06 2.5e-07 3.69e-07 3.93e-07 8e-07 2.2e-07 6.06e-08
ENSG00000090621 PABPC4 22499 7.19e-05 4.57e-05 6.45e-06 1.63e-05 6.29e-06 1.8e-05 5.04e-05 5.4e-06 3.72e-05 1.42e-05 4.86e-05 2.12e-05 6.15e-05 1.52e-05 6.95e-06 2.29e-05 2.08e-05 2.99e-05 7.92e-06 7.09e-06 1.69e-05 3.72e-05 3.5e-05 9.6e-06 5.4e-05 1.12e-05 1.39e-05 1.29e-05 4.2e-05 2.59e-05 2.56e-05 1.65e-06 2.31e-06 7.08e-06 1.34e-05 6.2e-06 2.73e-06 3.18e-06 5e-06 2.66e-06 1.8e-06 5.17e-05 5.29e-06 4.31e-07 2.67e-06 5.11e-06 4.08e-06 1.75e-06 1.23e-06
ENSG00000116983 HPCAL4 -92196 5.68e-06 9.31e-06 1.21e-06 3.02e-06 1.12e-06 1.39e-06 4.23e-06 4.39e-07 5e-06 1.94e-06 7.7e-06 3.2e-06 7.25e-06 2.09e-06 1.32e-06 3.81e-06 4.62e-06 3.99e-06 1.46e-06 1.2e-06 2.85e-06 4.9e-06 3.01e-06 1.63e-06 8.46e-06 1.72e-06 1.82e-06 1.77e-06 4.28e-06 4.71e-06 2.73e-06 1.57e-07 6.64e-07 1.52e-06 2.03e-06 1.17e-06 1e-06 4.46e-07 1.11e-06 2.09e-07 2.72e-07 6.32e-06 4.94e-06 2.52e-07 3.7e-07 4.11e-07 8.02e-07 2.22e-07 6.15e-08
ENSG00000127603 MACF1 517973 2.91e-07 1.16e-07 3.71e-08 1.78e-07 9.65e-08 9.71e-08 1.41e-07 5.21e-08 1.41e-07 4.24e-08 1.57e-07 7.88e-08 1.41e-07 6.56e-08 5.84e-08 7.89e-08 3.9e-08 1.33e-07 5.2e-08 3.74e-08 1.05e-07 1.26e-07 1.3e-07 4.82e-08 1.33e-07 1.19e-07 1.1e-07 8.71e-08 9.88e-08 1.12e-07 9.91e-08 3.41e-08 2.74e-08 8.49e-08 8.87e-08 3.77e-08 4.78e-08 9.25e-08 8.3e-08 3.74e-08 4.02e-08 1.46e-07 3.14e-08 3.26e-08 8.79e-08 1.69e-08 1.46e-07 4.82e-09 4.72e-08
ENSG00000131236 \N -440944 4.37e-07 1.42e-07 5.93e-08 1.9e-07 9.01e-08 9.91e-08 1.53e-07 5.35e-08 1.44e-07 4.57e-08 1.66e-07 8.55e-08 1.79e-07 8.13e-08 5.72e-08 7.37e-08 4.18e-08 2.15e-07 5.21e-08 4.21e-08 1.08e-07 1.26e-07 1.39e-07 4.16e-08 1.65e-07 1.21e-07 1.11e-07 9.36e-08 1.09e-07 1e-07 1.07e-07 3.52e-08 2.92e-08 8.89e-08 5.99e-08 3.14e-08 5.02e-08 9.62e-08 7.47e-08 3.59e-08 3.16e-08 1.63e-07 6.81e-08 1.71e-08 6.92e-08 1.84e-08 1.37e-07 4.6e-09 4.61e-08
ENSG00000168653 NDUFS5 572971 2.74e-07 1.01e-07 3.62e-08 1.78e-07 9.91e-08 9.32e-08 1.39e-07 5.24e-08 1.37e-07 4.23e-08 1.59e-07 8.02e-08 1.26e-07 6.21e-08 5.44e-08 7.87e-08 4.94e-08 1.18e-07 5.22e-08 3.29e-08 1.06e-07 1.3e-07 1.29e-07 4.99e-08 1.31e-07 1.13e-07 1.13e-07 8.45e-08 9.97e-08 1.11e-07 9.58e-08 3.19e-08 2.74e-08 8.68e-08 9.13e-08 3.87e-08 5.64e-08 9.2e-08 8.22e-08 3.8e-08 3.71e-08 1.35e-07 4.76e-08 0.0 9.88e-08 1.74e-08 1.5e-07 4.82e-09 4.72e-08
ENSG00000183682 BMP8A 107653 5.1e-06 7.21e-06 1.01e-06 2.27e-06 6.85e-07 9.09e-07 2.42e-06 4.04e-07 4.15e-06 1.2e-06 5.68e-06 3.46e-06 6.49e-06 2.22e-06 1.1e-06 2.42e-06 3.8e-06 3.49e-06 1.05e-06 1.31e-06 1.81e-06 4.13e-06 2.16e-06 1.56e-06 6.11e-06 1.25e-06 1.5e-06 1.73e-06 3.77e-06 4.19e-06 2.83e-06 4.57e-08 5.72e-07 1.76e-06 1.68e-06 9.6e-07 9.3e-07 4.41e-07 6.03e-07 3.24e-07 2.93e-07 5.58e-06 4.65e-06 1.96e-07 3.51e-07 3.61e-07 7.75e-07 2.52e-07 5.61e-08
ENSG00000237624 OXCT2P1 84333 6.67e-06 9.61e-06 1.3e-06 3.42e-06 1.53e-06 1.72e-06 5.6e-06 6.45e-07 4.48e-06 2.41e-06 8.88e-06 3.05e-06 8.21e-06 2.82e-06 1.79e-06 3.99e-06 5.38e-06 3.77e-06 1.31e-06 9.52e-07 2.78e-06 5.39e-06 3.47e-06 1.48e-06 9.17e-06 2.01e-06 2.68e-06 1.89e-06 4.49e-06 5.88e-06 3.52e-06 2.56e-07 7.35e-07 1.82e-06 2.2e-06 1.56e-06 1.08e-06 4.48e-07 1.33e-06 2.27e-07 3.57e-07 7.55e-06 4.96e-06 2.62e-07 4.39e-07 7.95e-07 8.08e-07 2.23e-07 5.62e-08
ENSG00000243970 PPIEL 39618 4.67e-05 3.1e-05 3.46e-06 1.27e-05 3.26e-06 9.07e-06 2.77e-05 3.39e-06 2.15e-05 8.22e-06 3.16e-05 1.26e-05 3.83e-05 7.67e-06 5.13e-06 1.24e-05 1.32e-05 1.66e-05 4.51e-06 4.29e-06 8.58e-06 2.01e-05 1.77e-05 5.62e-06 3.36e-05 6.66e-06 7.82e-06 7.8e-06 2.52e-05 1.73e-05 1.69e-05 1.01e-06 1.44e-06 4.84e-06 9.01e-06 4.59e-06 1.71e-06 2.4e-06 2.73e-06 1.03e-06 1.67e-06 3.65e-05 4.93e-06 4.26e-07 1.44e-06 3.07e-06 2.53e-06 1.24e-06 4.77e-07