Genes within 1Mb (chr1:39501046:A:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000084070 SMAP2 -843804 eQTL 1.14e-02 -0.0276 0.0109 0.0 0.0 0.255
ENSG00000084072 PPIE -191136 eQTL 5.14e-01 0.0169 0.0259 0.00317 0.0 0.255
ENSG00000090621 PABPC4 -75744 eQTL 5.54e-22 -0.0988 0.01 0.117 0.0767 0.255
ENSG00000116985 BMP8B -287819 eQTL 4.57e-02 0.0609 0.0304 0.0 0.0 0.255
ENSG00000116990 MYCL -401210 eQTL 1.68e-02 0.0418 0.0175 0.0015 0.0 0.255
ENSG00000117000 RLF -660341 eQTL 4.58e-02 -0.0244 0.0122 0.0 0.0 0.255
ENSG00000168653 NDUFS5 474728 eQTL 7.38e-08 0.105 0.0194 0.0 0.0 0.255
ENSG00000183682 BMP8A 9410 eQTL 4.58e-11 0.18 0.027 0.00882 0.00694 0.255
ENSG00000187801 ZFP69B -949061 eQTL 2.45e-02 0.0644 0.0286 0.0 0.0 0.255
ENSG00000243970 PPIEL -58625 eQTL 8.69e-10 0.168 0.0272 0.0 0.00476 0.255
ENSG00000259943 AL050341.2 -756921 eQTL 1.34e-02 0.0516 0.0209 0.0 0.0 0.255


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084070 SMAP2 -843804 1.27e-06 2.43e-06 3.14e-07 1.62e-06 4.61e-07 6.43e-07 2.28e-06 3.28e-07 1.71e-06 6.28e-07 1.95e-06 7.84e-07 2.98e-06 1.21e-06 3.31e-07 9.07e-07 1.07e-06 1.21e-06 7.65e-07 6.72e-07 7.61e-07 1.63e-06 1.81e-06 6.54e-07 2.47e-06 9.19e-07 9.18e-07 9.6e-07 1.7e-06 1.26e-06 8.51e-07 4.21e-08 1.78e-07 5.84e-07 6.12e-07 4.53e-07 6.08e-07 1.57e-07 3.52e-07 3.11e-07 4.53e-08 1.66e-06 6.81e-08 1.32e-07 3.38e-07 1.23e-07 1.71e-07 2.28e-08 5.77e-08
ENSG00000090621 PABPC4 -75744 1.55e-05 2.16e-05 2.86e-06 9.48e-06 3.38e-06 5.6e-06 8.32e-05 2.18e-06 1.6e-05 6.62e-06 1.92e-05 6.72e-06 3.26e-05 6.61e-06 5.37e-06 1.02e-05 1.11e-05 1.75e-05 3.31e-06 3.85e-06 8.4e-06 1.55e-05 6.88e-05 4.94e-06 2.91e-05 5.9e-06 7.6e-06 6.54e-06 5.77e-05 1.3e-05 8.88e-06 1.08e-06 1.45e-06 3.5e-06 5.86e-06 2.69e-06 1.84e-06 2.26e-06 2.22e-06 9.71e-07 9.92e-07 1.76e-05 1.57e-06 1.81e-07 1.58e-06 1.72e-06 1.94e-06 7.51e-07 6.24e-07
ENSG00000168653 NDUFS5 474728 2.68e-06 5.22e-06 5.8e-07 3.02e-06 1.62e-06 8.22e-07 9.71e-06 5.78e-07 4.36e-06 1.7e-06 4.32e-06 1.77e-06 7.1e-06 2.11e-06 1.33e-06 2e-06 1.93e-06 3.05e-06 1.61e-06 1.19e-06 1.98e-06 3.19e-06 4.8e-06 1.17e-06 4.86e-06 1.98e-06 1.53e-06 1.49e-06 4.46e-06 3.81e-06 1.96e-06 2.96e-07 4.53e-07 1.27e-06 1.98e-06 8.48e-07 8.07e-07 4.03e-07 1.18e-06 3.46e-07 1.92e-07 4.34e-06 2.9e-07 1.9e-07 5.95e-07 3.32e-07 5.17e-07 4.85e-08 2.83e-07
ENSG00000183682 BMP8A 9410 2.2e-05 2.48e-05 4.47e-06 1.17e-05 5.6e-06 7.63e-06 8.77e-05 3.4e-06 1.99e-05 8.88e-06 2.58e-05 8.63e-06 3.96e-05 8.97e-06 6.2e-06 1.35e-05 1.55e-05 2.19e-05 4.95e-06 5.37e-06 1.19e-05 2.31e-05 7.62e-05 7.18e-06 3.59e-05 7.59e-06 8.36e-06 8.42e-06 6.58e-05 1.77e-05 1.24e-05 1.45e-06 2.04e-06 4.07e-06 8.5e-06 3.73e-06 1.81e-06 2.72e-06 3.22e-06 1.3e-06 1.63e-06 2.33e-05 2.72e-06 1.54e-07 2.06e-06 2.56e-06 2.95e-06 1.02e-06 1.32e-06
ENSG00000187815 \N -976244 1.26e-06 1.39e-06 2.88e-07 1.18e-06 3.88e-07 5.88e-07 1.32e-06 2.66e-07 1.5e-06 4.66e-07 2.01e-06 6.03e-07 2.72e-06 6.9e-07 5.03e-07 7.3e-07 9.05e-07 9.53e-07 7.52e-07 4.13e-07 7.72e-07 1.12e-06 1.19e-06 5.39e-07 2.16e-06 6.52e-07 7.06e-07 7.27e-07 1.44e-06 1.23e-06 7.41e-07 6.31e-08 9.26e-08 6.93e-07 5.2e-07 3.96e-07 4.92e-07 1.36e-07 1.48e-07 1.04e-07 5.48e-08 1.52e-06 5.78e-08 1.3e-07 3.05e-07 8.76e-08 1.3e-07 3.35e-09 6.32e-08
ENSG00000198754 \N -270302 5.08e-06 9.74e-06 7.77e-07 4.56e-06 2.22e-06 1.52e-06 2.27e-05 9.79e-07 5.94e-06 3.43e-06 9.18e-06 2.83e-06 1.24e-05 3.9e-06 2.49e-06 4.82e-06 4.98e-06 5.6e-06 1.43e-06 1.17e-06 3.41e-06 5.5e-06 1.42e-05 1.93e-06 1.18e-05 4.12e-06 2.72e-06 2.27e-06 1.33e-05 7.69e-06 3.28e-06 4.71e-07 4.63e-07 1.61e-06 2.12e-06 8.84e-07 9.63e-07 4.71e-07 9.13e-07 6.1e-07 2.88e-07 8.58e-06 4.62e-07 1.81e-07 7.62e-07 9.82e-07 1.09e-06 2.62e-07 3.24e-07
ENSG00000243970 PPIEL -58625 1.67e-05 2.2e-05 3.07e-06 9.74e-06 4e-06 6.03e-06 9.17e-05 2.45e-06 1.67e-05 6.93e-06 2.06e-05 6.94e-06 3.51e-05 7.21e-06 5.59e-06 1.07e-05 1.24e-05 1.88e-05 3.54e-06 4.19e-06 9.2e-06 1.76e-05 7.76e-05 5.39e-06 3.04e-05 6.17e-06 7.82e-06 7.33e-06 6.7e-05 1.45e-05 1.01e-05 1.03e-06 1.51e-06 3.59e-06 6.38e-06 2.85e-06 1.76e-06 2.41e-06 2.46e-06 9.75e-07 1.07e-06 1.88e-05 1.69e-06 1.63e-07 1.88e-06 2.08e-06 2.08e-06 7.99e-07 8.91e-07