Genes within 1Mb (chr1:39222896:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 -660615 sc-eQTL 7.33e-01 0.083 0.243 0.056 PB L2
ENSG00000084072 PPIE -469286 sc-eQTL 5.10e-01 -0.144 0.218 0.056 PB L2
ENSG00000090621 PABPC4 -353894 sc-eQTL 1.21e-01 0.205 0.131 0.056 PB L2
ENSG00000116954 RRAGC 363124 sc-eQTL 5.46e-01 0.139 0.23 0.056 PB L2
ENSG00000116985 BMP8B -565969 sc-eQTL 6.58e-01 0.0677 0.152 0.056 PB L2
ENSG00000117000 RLF -938491 sc-eQTL 1.65e-01 -0.339 0.243 0.056 PB L2
ENSG00000127603 MACF1 141580 sc-eQTL 9.74e-01 -0.00685 0.207 0.056 PB L2
ENSG00000131236 CAP1 -817337 sc-eQTL 1.36e-01 0.305 0.203 0.056 PB L2
ENSG00000131238 PPT1 -874831 sc-eQTL 6.01e-01 0.117 0.224 0.056 PB L2
ENSG00000168653 NDUFS5 196578 sc-eQTL 9.54e-01 0.00647 0.112 0.056 PB L2
ENSG00000174574 AKIRIN1 231620 sc-eQTL 1.16e-01 -0.354 0.223 0.056 PB L2
ENSG00000198754 OXCT2 -548452 sc-eQTL 9.94e-01 0.00149 0.197 0.056 PB L2
ENSG00000214114 MYCBP 349528 sc-eQTL 7.03e-01 -0.0476 0.125 0.056 PB L2
ENSG00000238063 LINC01685 748071 sc-eQTL 7.62e-01 -0.0648 0.214 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116981 NT5C1A -449142 pQTL 0.0484 0.0739 0.0374 0.0 0.0 0.0285
ENSG00000116990 MYCL -679360 eQTL 4.16e-02 -0.0978 0.0479 0.00142 0.0 0.029
ENSG00000127603 MACF1 141580 eQTL 0.000442 -0.165 0.0468 0.0 0.0 0.029
ENSG00000131238 PPT1 -874831 eQTL 7.50e-03 0.225 0.0841 0.0 0.0 0.029
ENSG00000168389 MFSD2A -732216 eQTL 0.00294 -0.15 0.0504 0.00225 0.00102 0.029
ENSG00000214114 MYCBP 349528 eQTL 0.0328 0.078 0.0365 0.00101 0.0 0.029
ENSG00000228436 AL139260.1 362896 eQTL 0.0241 -0.273 0.121 0.0016 0.0 0.029


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116981 NT5C1A -449142 8.7e-07 6.26e-07 1.2e-07 4.37e-07 9.6e-08 2.54e-07 5.65e-07 1.09e-07 4.3e-07 2.43e-07 7.67e-07 3.61e-07 1.05e-06 2.06e-07 1.51e-07 2.23e-07 3.52e-07 4.11e-07 3.66e-07 1.86e-07 2.43e-07 4.14e-07 3.81e-07 1.71e-07 8.09e-07 2.32e-07 3.04e-07 2.63e-07 3.58e-07 8.5e-07 3.66e-07 6.37e-08 5.82e-08 3.03e-07 3.01e-07 1.94e-07 4.61e-07 1.24e-07 8.24e-08 2.8e-08 4.78e-08 7.54e-07 7.72e-08 2.68e-08 1.49e-07 4.23e-08 8.24e-08 2.31e-08 6.46e-08
ENSG00000127603 MACF1 141580 4.92e-06 5.26e-06 7.5e-07 3.52e-06 1.59e-06 1.56e-06 5.37e-06 9.93e-07 5.06e-06 2.35e-06 5.68e-06 3.54e-06 8.21e-06 2.07e-06 1.35e-06 3.81e-06 1.92e-06 3.69e-06 1.65e-06 1.13e-06 3.04e-06 4.9e-06 4.61e-06 1.36e-06 7.71e-06 1.52e-06 2.43e-06 1.77e-06 4.51e-06 5.03e-06 2.83e-06 5.25e-07 5.05e-07 1.57e-06 2.13e-06 1.18e-06 1.07e-06 4.56e-07 9.12e-07 5.82e-07 2.66e-07 7.35e-06 4.9e-07 1.56e-07 4.54e-07 9.83e-07 8.4e-07 2.72e-07 3.35e-07
ENSG00000168389 MFSD2A -732216 2.77e-07 1.42e-07 5.93e-08 2.27e-07 1.01e-07 8.21e-08 1.73e-07 5.66e-08 1.47e-07 6.4e-08 1.67e-07 1.05e-07 2.38e-07 8.15e-08 5.91e-08 7.74e-08 4.31e-08 1.56e-07 7.76e-08 5.35e-08 1.24e-07 1.31e-07 1.58e-07 2.83e-08 1.68e-07 1.21e-07 1.12e-07 1.06e-07 1.22e-07 1.36e-07 1.14e-07 3.68e-08 3.65e-08 9.81e-08 3.63e-08 3.11e-08 1.01e-07 7.68e-08 5.95e-08 4.41e-08 5.24e-08 1.6e-07 3.2e-08 2e-08 2.64e-08 6.68e-09 1.21e-07 1.95e-09 4.85e-08
ENSG00000228436 AL139260.1 362896 1.26e-06 9.35e-07 2.81e-07 6.94e-07 2.66e-07 4.35e-07 9.43e-07 2.66e-07 1.03e-06 3.28e-07 1.26e-06 5.75e-07 1.99e-06 2.79e-07 3.72e-07 5.49e-07 7.76e-07 5.71e-07 8.67e-07 5.19e-07 4.48e-07 9.46e-07 6.63e-07 4.38e-07 1.74e-06 2.44e-07 6.38e-07 4.96e-07 7.61e-07 1.28e-06 5.47e-07 3.86e-08 2.27e-07 7.11e-07 3.4e-07 4.6e-07 6.79e-07 1.92e-07 2.94e-07 4.17e-08 1.35e-07 1.54e-06 1.28e-07 9.69e-08 1.62e-07 1.17e-07 1.67e-07 8.35e-08 8.38e-08
ENSG00000243970 \N -336775 1.24e-06 1.01e-06 3.31e-07 1.1e-06 3.6e-07 4.76e-07 1.16e-06 2.98e-07 1.15e-06 3.71e-07 1.39e-06 5.81e-07 2.15e-06 2.74e-07 4.39e-07 6.89e-07 8.4e-07 5.88e-07 6.56e-07 6.87e-07 6.66e-07 1.19e-06 8.27e-07 5.76e-07 1.95e-06 2.55e-07 7.12e-07 6.46e-07 9.73e-07 1.23e-06 6.18e-07 1.3e-07 2.3e-07 6.64e-07 4.17e-07 4.44e-07 7.58e-07 2.34e-07 3.93e-07 1.17e-07 1.91e-07 1.54e-06 2.91e-07 1.38e-07 1.86e-07 1.2e-07 1.91e-07 7.81e-08 9.59e-08