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Genes within 1Mb (chr1:39068314:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 -815197 sc-eQTL 5.72e-01 -0.113 0.199 0.05 CD4_CTL L2
ENSG00000084072 PPIE -623868 sc-eQTL 3.75e-01 -0.185 0.208 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 8.17e-02 -0.336 0.192 0.05 CD4_CTL L2
ENSG00000116954 RRAGC 208542 sc-eQTL 1.28e-01 -0.309 0.202 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 -623171 sc-eQTL 3.01e-01 -0.188 0.181 0.05 CD4_CTL L2
ENSG00000127603 MACF1 -13002 sc-eQTL 4.94e-01 -0.108 0.157 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -971919 sc-eQTL 2.20e-01 0.166 0.135 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 9.01e-01 -0.0236 0.189 0.05 CD4_CTL L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 7.78e-01 0.056 0.199 0.05 CD4_CTL L2
ENSG00000214114 MYCBP 194946 sc-eQTL 8.05e-01 -0.0479 0.193 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 4.24e-01 -0.167 0.209 0.051 CD8_TCM L2
ENSG00000084072 PPIE -623868 sc-eQTL 5.15e-01 -0.128 0.197 0.051 CD8_TCM L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 5.34e-01 -0.101 0.162 0.051 CD8_TCM L2
ENSG00000116954 RRAGC 208542 sc-eQTL 2.90e-02 0.447 0.203 0.051 CD8_TCM L2
ENSG00000116983 HPCAL4 -623171 sc-eQTL 4.34e-01 -0.147 0.187 0.051 CD8_TCM L2
ENSG00000127603 MACF1 -13002 sc-eQTL 7.08e-01 0.0588 0.157 0.051 CD8_TCM L2
ENSG00000131236 CAP1 -971919 sc-eQTL 5.64e-01 -0.0851 0.147 0.051 CD8_TCM L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 6.26e-01 -0.1 0.205 0.051 CD8_TCM L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 1.78e-01 0.276 0.204 0.051 CD8_TCM L2
ENSG00000214114 MYCBP 194946 sc-eQTL 3.03e-01 -0.195 0.188 0.051 CD8_TCM L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 3.71e-01 -0.18 0.2 0.051 NK_CD56bright L2
ENSG00000084072 PPIE -623868 sc-eQTL 8.12e-01 -0.045 0.189 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 3.08e-01 0.184 0.18 0.051 NK_CD56bright L2
ENSG00000116954 RRAGC 208542 sc-eQTL 2.81e-01 -0.207 0.192 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B -720551 sc-eQTL 7.94e-01 0.0472 0.18 0.051 NK_CD56bright L2
ENSG00000127603 MACF1 -13002 sc-eQTL 4.66e-01 0.104 0.143 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 -971919 sc-eQTL 4.29e-01 0.119 0.15 0.051 NK_CD56bright L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 2.10e-01 -0.244 0.194 0.051 NK_CD56bright L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 6.71e-01 0.077 0.181 0.051 NK_CD56bright L2
ENSG00000214114 MYCBP 194946 sc-eQTL 4.73e-01 -0.129 0.18 0.051 NK_CD56bright L2
ENSG00000228436 AL139260.1 208402 sc-eQTL 9.30e-01 -0.0168 0.191 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 8.73e-01 -0.0325 0.204 0.05 NK_HLA L2
ENSG00000084072 PPIE -623868 sc-eQTL 5.56e-01 -0.122 0.207 0.05 NK_HLA L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 9.21e-01 0.0186 0.187 0.05 NK_HLA L2
ENSG00000116954 RRAGC 208542 sc-eQTL 1.49e-01 0.31 0.214 0.05 NK_HLA L2
ENSG00000116985 BMP8B -720551 sc-eQTL 3.11e-01 -0.194 0.191 0.05 NK_HLA L2
ENSG00000127603 MACF1 -13002 sc-eQTL 3.37e-01 0.153 0.159 0.05 NK_HLA L2
ENSG00000131236 CAP1 -971919 sc-eQTL 3.96e-01 -0.14 0.165 0.05 NK_HLA L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 2.88e-02 -0.459 0.208 0.05 NK_HLA L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 6.75e-01 -0.0891 0.212 0.05 NK_HLA L2
ENSG00000214114 MYCBP 194946 sc-eQTL 2.05e-01 0.267 0.21 0.05 NK_HLA L2
ENSG00000228436 AL139260.1 208402 sc-eQTL 8.01e-01 0.0486 0.192 0.05 NK_HLA L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 9.87e-02 0.433 0.26 0.052 PB L2
ENSG00000084072 PPIE -623868 sc-eQTL 2.86e-01 0.253 0.235 0.052 PB L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 7.15e-01 -0.0525 0.143 0.052 PB L2
ENSG00000116954 RRAGC 208542 sc-eQTL 4.31e-01 -0.197 0.249 0.052 PB L2
ENSG00000116985 BMP8B -720551 sc-eQTL 1.44e-02 -0.4 0.161 0.052 PB L2
ENSG00000127603 MACF1 -13002 sc-eQTL 3.63e-01 0.204 0.223 0.052 PB L2
ENSG00000131236 CAP1 -971919 sc-eQTL 4.37e-01 0.173 0.222 0.052 PB L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 1.32e-01 0.182 0.12 0.052 PB L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 9.54e-01 0.0141 0.245 0.052 PB L2
ENSG00000198754 OXCT2 -703034 sc-eQTL 1.82e-01 -0.286 0.212 0.052 PB L2
ENSG00000214114 MYCBP 194946 sc-eQTL 4.87e-01 -0.094 0.135 0.052 PB L2
ENSG00000238063 LINC01685 593489 sc-eQTL 5.81e-01 0.128 0.232 0.052 PB L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 8.01e-01 -0.052 0.206 0.05 Pro_T L2
ENSG00000084072 PPIE -623868 sc-eQTL 6.82e-01 0.0777 0.189 0.05 Pro_T L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 2.50e-01 0.167 0.144 0.05 Pro_T L2
ENSG00000116954 RRAGC 208542 sc-eQTL 2.73e-01 -0.225 0.205 0.05 Pro_T L2
ENSG00000116985 BMP8B -720551 sc-eQTL 5.00e-01 0.081 0.12 0.05 Pro_T L2
ENSG00000127603 MACF1 -13002 sc-eQTL 2.68e-01 0.159 0.143 0.05 Pro_T L2
ENSG00000131236 CAP1 -971919 sc-eQTL 8.30e-01 0.0338 0.158 0.05 Pro_T L2
ENSG00000168389 MFSD2A -886798 sc-eQTL 7.39e-01 0.0501 0.15 0.05 Pro_T L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 2.09e-01 -0.162 0.128 0.05 Pro_T L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 6.76e-01 -0.0833 0.199 0.05 Pro_T L2
ENSG00000198754 OXCT2 -703034 sc-eQTL 2.96e-03 -0.3 0.0998 0.05 Pro_T L2
ENSG00000214114 MYCBP 194946 sc-eQTL 2.12e-01 -0.17 0.136 0.05 Pro_T L2
ENSG00000043514 TRIT1 -815197 sc-eQTL 1.79e-01 -0.279 0.207 0.058 gdT L2
ENSG00000084072 PPIE -623868 sc-eQTL 7.23e-01 -0.0798 0.225 0.058 gdT L2
ENSG00000090621 PABPC4 -508476 sc-eQTL 4.91e-01 -0.137 0.198 0.058 gdT L2
ENSG00000116954 RRAGC 208542 sc-eQTL 9.01e-01 -0.029 0.233 0.058 gdT L2
ENSG00000116985 BMP8B -720551 sc-eQTL 8.55e-01 0.0345 0.189 0.058 gdT L2
ENSG00000127603 MACF1 -13002 sc-eQTL 8.97e-01 0.0243 0.188 0.058 gdT L2
ENSG00000131236 CAP1 -971919 sc-eQTL 2.88e-01 -0.165 0.155 0.058 gdT L2
ENSG00000168389 MFSD2A -886798 sc-eQTL 8.13e-01 -0.0443 0.187 0.058 gdT L2
ENSG00000168653 NDUFS5 41996 sc-eQTL 3.53e-01 -0.19 0.204 0.058 gdT L2
ENSG00000174574 AKIRIN1 77038 sc-eQTL 5.28e-01 -0.126 0.199 0.058 gdT L2
ENSG00000198754 OXCT2 -703034 sc-eQTL 1.58e-01 -0.219 0.154 0.058 gdT L2
ENSG00000214114 MYCBP 194946 sc-eQTL 6.70e-01 0.0837 0.196 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168653 NDUFS5 41996 eQTL 1.93e-01 0.0589 0.0452 0.00145 0.0 0.0447
ENSG00000174574 AKIRIN1 77038 eQTL 3.16e-02 0.0451 0.021 0.0 0.0 0.0447
ENSG00000183682 BMP8A -423322 eQTL 0.00349 0.185 0.063 0.0 0.0 0.0447
ENSG00000228477 AL663070.1 -894366 eQTL 0.0562 0.119 0.0623 0.00106 0.0 0.0447
ENSG00000243970 PPIEL -491357 eQTL 0.000197 0.236 0.0631 0.0 0.0 0.0447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000174574 AKIRIN1 77038 5.72e-06 7.1e-06 8.29e-07 3.81e-06 1.76e-06 1.92e-06 8.54e-06 1.28e-06 4.89e-06 3.25e-06 8.18e-06 2.94e-06 1.01e-05 2.5e-06 9.95e-07 4.32e-06 3.19e-06 3.84e-06 2.25e-06 1.8e-06 2.92e-06 6.89e-06 5.02e-06 2.01e-06 9.38e-06 2.3e-06 3.1e-06 1.9e-06 6.6e-06 7.66e-06 3.37e-06 4.69e-07 8.1e-07 2.61e-06 2.36e-06 1.53e-06 1.24e-06 9.53e-07 1.09e-06 8.28e-07 7.51e-07 8.09e-06 6.85e-07 1.38e-07 7.73e-07 1.08e-06 1.07e-06 6.96e-07 5.63e-07
ENSG00000183682 BMP8A -423322 7.74e-07 4.24e-07 1.22e-07 3.48e-07 9.16e-08 1.97e-07 5.2e-07 1.42e-07 3.66e-07 2.26e-07 5.29e-07 3.36e-07 6.08e-07 1.1e-07 1.9e-07 2.08e-07 3.13e-07 3.67e-07 2.25e-07 1.53e-07 1.97e-07 3.49e-07 3.08e-07 1.58e-07 6.59e-07 2.42e-07 2.62e-07 2.24e-07 3.27e-07 5.56e-07 2.43e-07 5.77e-08 5.19e-08 1.39e-07 3.07e-07 9.51e-08 1.13e-07 1.11e-07 4.37e-08 3.01e-08 4.82e-08 3.85e-07 4.65e-08 1.05e-08 1.49e-07 1.91e-08 9.95e-08 1.79e-08 5.13e-08
ENSG00000243970 PPIEL -491357 4.89e-07 2.5e-07 1.05e-07 2.53e-07 9.93e-08 1.44e-07 3.57e-07 8.86e-08 2.38e-07 1.5e-07 2.98e-07 2.09e-07 3.95e-07 8.85e-08 1.12e-07 1.33e-07 1.17e-07 2.87e-07 1.5e-07 8.1e-08 1.6e-07 2.3e-07 2.26e-07 9.01e-08 3.7e-07 2e-07 1.83e-07 1.68e-07 1.98e-07 2.89e-07 1.71e-07 7.69e-08 4.93e-08 1.23e-07 1.39e-07 5.2e-08 6.87e-08 6.97e-08 4.99e-08 7.65e-08 3.64e-08 2.43e-07 2.67e-08 1.75e-08 9.95e-08 8.59e-09 1.03e-07 3.14e-09 5.69e-08