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Genes within 1Mb (chr1:39058870:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 -824641 sc-eQTL 5.72e-01 -0.113 0.199 0.05 CD4_CTL L2
ENSG00000084072 PPIE -633312 sc-eQTL 3.75e-01 -0.185 0.208 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 8.17e-02 -0.336 0.192 0.05 CD4_CTL L2
ENSG00000116954 RRAGC 199098 sc-eQTL 1.28e-01 -0.309 0.202 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 -632615 sc-eQTL 3.01e-01 -0.188 0.181 0.05 CD4_CTL L2
ENSG00000127603 MACF1 -22446 sc-eQTL 4.94e-01 -0.108 0.157 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -981363 sc-eQTL 2.20e-01 0.166 0.135 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 9.01e-01 -0.0236 0.189 0.05 CD4_CTL L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 7.78e-01 0.056 0.199 0.05 CD4_CTL L2
ENSG00000214114 MYCBP 185502 sc-eQTL 8.05e-01 -0.0479 0.193 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 4.24e-01 -0.167 0.209 0.051 CD8_TCM L2
ENSG00000084072 PPIE -633312 sc-eQTL 5.15e-01 -0.128 0.197 0.051 CD8_TCM L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 5.34e-01 -0.101 0.162 0.051 CD8_TCM L2
ENSG00000116954 RRAGC 199098 sc-eQTL 2.90e-02 0.447 0.203 0.051 CD8_TCM L2
ENSG00000116983 HPCAL4 -632615 sc-eQTL 4.34e-01 -0.147 0.187 0.051 CD8_TCM L2
ENSG00000127603 MACF1 -22446 sc-eQTL 7.08e-01 0.0588 0.157 0.051 CD8_TCM L2
ENSG00000131236 CAP1 -981363 sc-eQTL 5.64e-01 -0.0851 0.147 0.051 CD8_TCM L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 6.26e-01 -0.1 0.205 0.051 CD8_TCM L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 1.78e-01 0.276 0.204 0.051 CD8_TCM L2
ENSG00000214114 MYCBP 185502 sc-eQTL 3.03e-01 -0.195 0.188 0.051 CD8_TCM L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 3.71e-01 -0.18 0.2 0.051 NK_CD56bright L2
ENSG00000084072 PPIE -633312 sc-eQTL 8.12e-01 -0.045 0.189 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 3.08e-01 0.184 0.18 0.051 NK_CD56bright L2
ENSG00000116954 RRAGC 199098 sc-eQTL 2.81e-01 -0.207 0.192 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B -729995 sc-eQTL 7.94e-01 0.0472 0.18 0.051 NK_CD56bright L2
ENSG00000127603 MACF1 -22446 sc-eQTL 4.66e-01 0.104 0.143 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 -981363 sc-eQTL 4.29e-01 0.119 0.15 0.051 NK_CD56bright L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 2.10e-01 -0.244 0.194 0.051 NK_CD56bright L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 6.71e-01 0.077 0.181 0.051 NK_CD56bright L2
ENSG00000214114 MYCBP 185502 sc-eQTL 4.73e-01 -0.129 0.18 0.051 NK_CD56bright L2
ENSG00000228436 AL139260.1 198958 sc-eQTL 9.30e-01 -0.0168 0.191 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 8.73e-01 -0.0325 0.204 0.05 NK_HLA L2
ENSG00000084072 PPIE -633312 sc-eQTL 5.56e-01 -0.122 0.207 0.05 NK_HLA L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 9.21e-01 0.0186 0.187 0.05 NK_HLA L2
ENSG00000116954 RRAGC 199098 sc-eQTL 1.49e-01 0.31 0.214 0.05 NK_HLA L2
ENSG00000116985 BMP8B -729995 sc-eQTL 3.11e-01 -0.194 0.191 0.05 NK_HLA L2
ENSG00000127603 MACF1 -22446 sc-eQTL 3.37e-01 0.153 0.159 0.05 NK_HLA L2
ENSG00000131236 CAP1 -981363 sc-eQTL 3.96e-01 -0.14 0.165 0.05 NK_HLA L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 2.88e-02 -0.459 0.208 0.05 NK_HLA L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 6.75e-01 -0.0891 0.212 0.05 NK_HLA L2
ENSG00000214114 MYCBP 185502 sc-eQTL 2.05e-01 0.267 0.21 0.05 NK_HLA L2
ENSG00000228436 AL139260.1 198958 sc-eQTL 8.01e-01 0.0486 0.192 0.05 NK_HLA L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 9.87e-02 0.433 0.26 0.052 PB L2
ENSG00000084072 PPIE -633312 sc-eQTL 2.86e-01 0.253 0.235 0.052 PB L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 7.15e-01 -0.0525 0.143 0.052 PB L2
ENSG00000116954 RRAGC 199098 sc-eQTL 4.31e-01 -0.197 0.249 0.052 PB L2
ENSG00000116985 BMP8B -729995 sc-eQTL 1.44e-02 -0.4 0.161 0.052 PB L2
ENSG00000127603 MACF1 -22446 sc-eQTL 3.63e-01 0.204 0.223 0.052 PB L2
ENSG00000131236 CAP1 -981363 sc-eQTL 4.37e-01 0.173 0.222 0.052 PB L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 1.32e-01 0.182 0.12 0.052 PB L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 9.54e-01 0.0141 0.245 0.052 PB L2
ENSG00000198754 OXCT2 -712478 sc-eQTL 1.82e-01 -0.286 0.212 0.052 PB L2
ENSG00000214114 MYCBP 185502 sc-eQTL 4.87e-01 -0.094 0.135 0.052 PB L2
ENSG00000238063 LINC01685 584045 sc-eQTL 5.81e-01 0.128 0.232 0.052 PB L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 8.01e-01 -0.052 0.206 0.05 Pro_T L2
ENSG00000084072 PPIE -633312 sc-eQTL 6.82e-01 0.0777 0.189 0.05 Pro_T L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 2.50e-01 0.167 0.144 0.05 Pro_T L2
ENSG00000116954 RRAGC 199098 sc-eQTL 2.73e-01 -0.225 0.205 0.05 Pro_T L2
ENSG00000116985 BMP8B -729995 sc-eQTL 5.00e-01 0.081 0.12 0.05 Pro_T L2
ENSG00000127603 MACF1 -22446 sc-eQTL 2.68e-01 0.159 0.143 0.05 Pro_T L2
ENSG00000131236 CAP1 -981363 sc-eQTL 8.30e-01 0.0338 0.158 0.05 Pro_T L2
ENSG00000168389 MFSD2A -896242 sc-eQTL 7.39e-01 0.0501 0.15 0.05 Pro_T L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 2.09e-01 -0.162 0.128 0.05 Pro_T L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 6.76e-01 -0.0833 0.199 0.05 Pro_T L2
ENSG00000198754 OXCT2 -712478 sc-eQTL 2.96e-03 -0.3 0.0998 0.05 Pro_T L2
ENSG00000214114 MYCBP 185502 sc-eQTL 2.12e-01 -0.17 0.136 0.05 Pro_T L2
ENSG00000043514 TRIT1 -824641 sc-eQTL 1.79e-01 -0.279 0.207 0.058 gdT L2
ENSG00000084072 PPIE -633312 sc-eQTL 7.23e-01 -0.0798 0.225 0.058 gdT L2
ENSG00000090621 PABPC4 -517920 sc-eQTL 4.91e-01 -0.137 0.198 0.058 gdT L2
ENSG00000116954 RRAGC 199098 sc-eQTL 9.01e-01 -0.029 0.233 0.058 gdT L2
ENSG00000116985 BMP8B -729995 sc-eQTL 8.55e-01 0.0345 0.189 0.058 gdT L2
ENSG00000127603 MACF1 -22446 sc-eQTL 8.97e-01 0.0243 0.188 0.058 gdT L2
ENSG00000131236 CAP1 -981363 sc-eQTL 2.88e-01 -0.165 0.155 0.058 gdT L2
ENSG00000168389 MFSD2A -896242 sc-eQTL 8.13e-01 -0.0443 0.187 0.058 gdT L2
ENSG00000168653 NDUFS5 32552 sc-eQTL 3.53e-01 -0.19 0.204 0.058 gdT L2
ENSG00000174574 AKIRIN1 67594 sc-eQTL 5.28e-01 -0.126 0.199 0.058 gdT L2
ENSG00000198754 OXCT2 -712478 sc-eQTL 1.58e-01 -0.219 0.154 0.058 gdT L2
ENSG00000214114 MYCBP 185502 sc-eQTL 6.70e-01 0.0837 0.196 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168653 NDUFS5 32552 eQTL 1.99e-01 0.0557 0.0433 0.00167 0.0 0.0466
ENSG00000183682 BMP8A -432766 eQTL 0.00591 0.167 0.0604 0.0 0.0 0.0466
ENSG00000228477 AL663070.1 -903810 eQTL 0.0413 0.122 0.0597 0.00125 0.0 0.0466
ENSG00000243970 PPIEL -500801 eQTL 0.000671 0.206 0.0605 0.0 0.0 0.0466
ENSG00000284719 AL033527.5 -740552 eQTL 0.0421 0.188 0.0926 0.0 0.0 0.0466

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000174574 \N 67594 6.54e-06 7.73e-06 8.44e-07 3.67e-06 1.82e-06 2.36e-06 8.99e-06 1.28e-06 5.07e-06 3.54e-06 8.58e-06 3.68e-06 1.07e-05 2.8e-06 1.18e-06 4.76e-06 3.19e-06 3.77e-06 2.15e-06 2.26e-06 3.46e-06 7.44e-06 5.57e-06 2.21e-06 9.63e-06 2.43e-06 3.64e-06 2.3e-06 6.74e-06 7.66e-06 3.71e-06 5.57e-07 8.38e-07 2.63e-06 2.12e-06 2.07e-06 1.4e-06 1.08e-06 1.26e-06 8.21e-07 8.74e-07 8.16e-06 9.07e-07 1.62e-07 7.71e-07 8.44e-07 9.67e-07 6.35e-07 6.01e-07
ENSG00000183682 BMP8A -432766 6.97e-07 3.77e-07 8.55e-08 3.05e-07 1.05e-07 1.54e-07 4.53e-07 8.37e-08 2.81e-07 1.7e-07 4.13e-07 3.21e-07 5.81e-07 9.48e-08 1.45e-07 1.76e-07 1.17e-07 3.04e-07 1.27e-07 1.15e-07 1.61e-07 2.76e-07 2.77e-07 1.13e-07 4.88e-07 2.29e-07 1.87e-07 2.13e-07 2.57e-07 2.97e-07 2.11e-07 7.49e-08 5.38e-08 1.21e-07 1.97e-07 6.73e-08 8.75e-08 6.67e-08 5.28e-08 7.5e-08 8.48e-08 4.04e-07 3.37e-08 1.7e-08 1.1e-07 9.12e-09 9.68e-08 3.25e-09 5.16e-08
ENSG00000243970 PPIEL -500801 4.21e-07 2.5e-07 6.57e-08 2.49e-07 1.07e-07 1.08e-07 3.33e-07 6.75e-08 2.12e-07 1.15e-07 2.47e-07 1.96e-07 3.77e-07 8.54e-08 7.98e-08 1.14e-07 6.17e-08 2.43e-07 7.53e-08 8.1e-08 1.39e-07 2.09e-07 2e-07 4.34e-08 3.14e-07 1.82e-07 1.37e-07 1.61e-07 1.54e-07 1.8e-07 1.52e-07 5.22e-08 4.98e-08 9.98e-08 7.55e-08 5.04e-08 5.45e-08 6.78e-08 4.99e-08 7.92e-08 3.6e-08 2.65e-07 3.19e-08 7.32e-09 5.84e-08 9.44e-09 9.07e-08 0.0 4.83e-08