logo

Genes within 1Mb (chr1:38951512:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 -931999 sc-eQTL 5.32e-01 -0.114 0.182 0.95 CD4_CTL L2
ENSG00000084072 PPIE -740670 sc-eQTL 1.04e-01 0.309 0.189 0.95 CD4_CTL L2
ENSG00000090621 PABPC4 -625278 sc-eQTL 5.40e-02 0.339 0.175 0.95 CD4_CTL L2
ENSG00000116954 RRAGC 91740 sc-eQTL 4.99e-01 0.126 0.186 0.95 CD4_CTL L2
ENSG00000116983 HPCAL4 -739973 sc-eQTL 9.66e-01 0.00716 0.166 0.95 CD4_CTL L2
ENSG00000127603 MACF1 -129804 sc-eQTL 1.86e-01 0.19 0.143 0.95 CD4_CTL L2
ENSG00000168653 NDUFS5 -74806 sc-eQTL 9.12e-01 0.0192 0.173 0.95 CD4_CTL L2
ENSG00000174574 AKIRIN1 -39764 sc-eQTL 3.94e-01 -0.155 0.181 0.95 CD4_CTL L2
ENSG00000183386 FHL3 945906 sc-eQTL 4.80e-01 -0.124 0.175 0.95 CD4_CTL L2
ENSG00000183431 SF3A3 961437 sc-eQTL 2.21e-01 -0.221 0.18 0.95 CD4_CTL L2
ENSG00000183520 UTP11 942254 sc-eQTL 3.45e-01 0.17 0.18 0.95 CD4_CTL L2
ENSG00000214114 MYCBP 78144 sc-eQTL 7.86e-01 0.0481 0.177 0.95 CD4_CTL L2
ENSG00000043514 TRIT1 -931999 sc-eQTL 8.67e-01 0.0311 0.186 0.949 NK_CD56bright L2
ENSG00000084072 PPIE -740670 sc-eQTL 5.61e-01 0.102 0.175 0.949 NK_CD56bright L2
ENSG00000090621 PABPC4 -625278 sc-eQTL 6.02e-01 0.0871 0.167 0.949 NK_CD56bright L2
ENSG00000116954 RRAGC 91740 sc-eQTL 6.24e-01 -0.0872 0.178 0.949 NK_CD56bright L2
ENSG00000116985 BMP8B -837353 sc-eQTL 3.11e-01 -0.169 0.166 0.949 NK_CD56bright L2
ENSG00000127603 MACF1 -129804 sc-eQTL 6.29e-01 -0.0639 0.132 0.949 NK_CD56bright L2
ENSG00000168653 NDUFS5 -74806 sc-eQTL 9.17e-01 0.0188 0.18 0.949 NK_CD56bright L2
ENSG00000174574 AKIRIN1 -39764 sc-eQTL 2.26e-01 0.202 0.167 0.949 NK_CD56bright L2
ENSG00000183386 FHL3 945906 sc-eQTL 3.04e-01 -0.154 0.15 0.949 NK_CD56bright L2
ENSG00000183431 SF3A3 961437 sc-eQTL 3.07e-01 0.198 0.193 0.949 NK_CD56bright L2
ENSG00000183520 UTP11 942254 sc-eQTL 4.18e-01 -0.159 0.196 0.949 NK_CD56bright L2
ENSG00000214114 MYCBP 78144 sc-eQTL 1.68e-01 0.229 0.166 0.949 NK_CD56bright L2
ENSG00000228436 AL139260.1 91600 sc-eQTL 4.00e-01 0.148 0.176 0.949 NK_CD56bright L2
ENSG00000043514 TRIT1 -931999 sc-eQTL 3.00e-01 -0.188 0.181 0.947 NK_HLA L2
ENSG00000084072 PPIE -740670 sc-eQTL 1.39e-01 0.272 0.183 0.947 NK_HLA L2
ENSG00000090621 PABPC4 -625278 sc-eQTL 3.74e-01 0.148 0.166 0.947 NK_HLA L2
ENSG00000116954 RRAGC 91740 sc-eQTL 1.72e-01 -0.261 0.191 0.947 NK_HLA L2
ENSG00000116985 BMP8B -837353 sc-eQTL 3.49e-01 0.16 0.17 0.947 NK_HLA L2
ENSG00000127603 MACF1 -129804 sc-eQTL 8.63e-01 -0.0245 0.142 0.947 NK_HLA L2
ENSG00000168653 NDUFS5 -74806 sc-eQTL 2.65e-03 0.559 0.183 0.947 NK_HLA L2
ENSG00000174574 AKIRIN1 -39764 sc-eQTL 6.43e-01 0.0878 0.189 0.947 NK_HLA L2
ENSG00000183386 FHL3 945906 sc-eQTL 5.16e-01 -0.0908 0.139 0.947 NK_HLA L2
ENSG00000183431 SF3A3 961437 sc-eQTL 3.33e-01 0.184 0.19 0.947 NK_HLA L2
ENSG00000183520 UTP11 942254 sc-eQTL 5.11e-02 -0.373 0.19 0.947 NK_HLA L2
ENSG00000214114 MYCBP 78144 sc-eQTL 6.22e-02 -0.349 0.186 0.947 NK_HLA L2
ENSG00000228436 AL139260.1 91600 sc-eQTL 9.65e-01 0.00748 0.171 0.947 NK_HLA L2
ENSG00000043514 TRIT1 -931999 sc-eQTL 1.00e-01 -0.361 0.218 0.941 PB L2
ENSG00000084072 PPIE -740670 sc-eQTL 2.05e-01 -0.251 0.197 0.941 PB L2
ENSG00000090621 PABPC4 -625278 sc-eQTL 5.86e-01 0.0657 0.12 0.941 PB L2
ENSG00000116954 RRAGC 91740 sc-eQTL 9.47e-01 -0.0139 0.21 0.941 PB L2
ENSG00000116985 BMP8B -837353 sc-eQTL 1.11e-01 0.22 0.137 0.941 PB L2
ENSG00000127603 MACF1 -129804 sc-eQTL 5.42e-01 -0.115 0.188 0.941 PB L2
ENSG00000168653 NDUFS5 -74806 sc-eQTL 2.57e-01 -0.115 0.101 0.941 PB L2
ENSG00000174574 AKIRIN1 -39764 sc-eQTL 6.50e-01 -0.0933 0.205 0.941 PB L2
ENSG00000183431 SF3A3 961437 sc-eQTL 5.89e-01 -0.0998 0.184 0.941 PB L2
ENSG00000183520 UTP11 942254 sc-eQTL 7.28e-01 0.0472 0.135 0.941 PB L2
ENSG00000185668 POU3F1 904719 sc-eQTL 3.36e-01 -0.188 0.194 0.941 PB L2
ENSG00000198754 OXCT2 -819836 sc-eQTL 8.84e-02 0.305 0.177 0.941 PB L2
ENSG00000214114 MYCBP 78144 sc-eQTL 4.38e-01 0.0881 0.113 0.941 PB L2
ENSG00000238063 LINC01685 476687 sc-eQTL 5.22e-01 0.125 0.194 0.941 PB L2
ENSG00000043514 TRIT1 -931999 sc-eQTL 4.22e-01 0.15 0.186 0.942 gdT L2
ENSG00000084072 PPIE -740670 sc-eQTL 9.89e-01 0.00281 0.202 0.942 gdT L2
ENSG00000090621 PABPC4 -625278 sc-eQTL 1.27e-01 0.271 0.177 0.942 gdT L2
ENSG00000116954 RRAGC 91740 sc-eQTL 7.63e-01 0.0634 0.21 0.942 gdT L2
ENSG00000116985 BMP8B -837353 sc-eQTL 4.39e-01 -0.131 0.169 0.942 gdT L2
ENSG00000127603 MACF1 -129804 sc-eQTL 6.59e-01 -0.0746 0.169 0.942 gdT L2
ENSG00000168653 NDUFS5 -74806 sc-eQTL 9.51e-01 0.0113 0.184 0.942 gdT L2
ENSG00000174574 AKIRIN1 -39764 sc-eQTL 8.64e-01 -0.0307 0.179 0.942 gdT L2
ENSG00000183386 FHL3 945906 sc-eQTL 4.71e-03 -0.525 0.183 0.942 gdT L2
ENSG00000183431 SF3A3 961437 sc-eQTL 3.81e-01 0.182 0.208 0.942 gdT L2
ENSG00000183520 UTP11 942254 sc-eQTL 7.88e-01 0.0584 0.217 0.942 gdT L2
ENSG00000185668 POU3F1 904719 sc-eQTL 1.69e-01 -0.247 0.179 0.942 gdT L2
ENSG00000198754 OXCT2 -819836 sc-eQTL 1.22e-01 0.215 0.138 0.942 gdT L2
ENSG00000214114 MYCBP 78144 sc-eQTL 9.82e-01 -0.00401 0.176 0.942 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116954 RRAGC 91740 eQTL 0.0241 -0.0984 0.0436 0.00174 0.0 0.0461
ENSG00000183682 BMP8A -540124 eQTL 0.0071 -0.156 0.058 0.0 0.0 0.0461
ENSG00000243970 PPIEL -608159 eQTL 0.000511 -0.202 0.058 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000174574 \N -39764 7.68e-06 9.38e-06 7.79e-07 3.32e-06 2.36e-06 3.93e-06 0.000121 1.18e-06 6.28e-06 3.77e-06 1.06e-05 2.9e-06 1.36e-05 3.86e-06 1.91e-06 4.56e-06 5.51e-06 4.69e-06 1.49e-06 1.39e-06 4.98e-06 7.64e-06 0.000137 2.9e-06 2.16e-05 2.07e-06 3.08e-06 1.76e-06 0.00011 7.71e-06 3.68e-06 2.48e-07 4.45e-07 1.52e-06 1.96e-06 1.71e-06 8.05e-07 4.12e-07 1.34e-06 3.47e-07 3.53e-07 2.15e-05 1.39e-06 1.27e-08 7.7e-07 4.12e-07 9.75e-07 2.3e-07 3.9e-07
ENSG00000183682 BMP8A -540124 1.11e-06 8.36e-07 9.89e-08 4.31e-07 9.16e-08 4.06e-07 1.55e-06 9.26e-08 4.43e-07 2.26e-07 8.15e-07 3.27e-07 1.55e-06 1.98e-07 2.18e-07 2.14e-07 4.87e-07 4.07e-07 2.25e-07 9.01e-08 2.35e-07 4.66e-07 1.88e-06 2.19e-07 1.97e-06 2.32e-07 2.52e-07 1.95e-07 2.07e-06 8.63e-07 2.6e-07 2.9e-08 3.21e-08 1.4e-07 3.47e-07 8.17e-08 6.14e-08 9.03e-08 5.78e-08 6.92e-08 5.28e-08 1.46e-06 6.28e-08 7.26e-09 1.33e-07 1.29e-08 9.84e-08 1.93e-09 4.68e-08
ENSG00000243970 PPIEL -608159 8.35e-07 6.04e-07 8.83e-08 3.77e-07 1.1e-07 3.32e-07 1.26e-06 7.46e-08 3.03e-07 1.65e-07 4.88e-07 2.11e-07 1.2e-06 1.48e-07 1.45e-07 1.53e-07 2.48e-07 3.56e-07 1.62e-07 7.49e-08 1.89e-07 3.15e-07 1.34e-06 1.29e-07 1.69e-06 1.94e-07 1.83e-07 1.61e-07 1.62e-06 6.98e-07 1.93e-07 3.65e-08 3.43e-08 1.17e-07 3e-07 5.51e-08 4.43e-08 8.71e-08 6.62e-08 5.56e-08 5.41e-08 1.4e-06 5.09e-08 1.43e-08 9.64e-08 1.81e-08 8.93e-08 1.89e-09 4.97e-08