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Genes within 1Mb (chr1:38830066:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000084072 PPIE -862116 sc-eQTL 9.11e-01 -0.0272 0.242 0.059 PB L2
ENSG00000090621 PABPC4 -746724 sc-eQTL 9.20e-01 0.0148 0.147 0.059 PB L2
ENSG00000116954 RRAGC -29706 sc-eQTL 1.37e-02 -0.623 0.249 0.059 PB L2
ENSG00000116985 BMP8B -958799 sc-eQTL 4.27e-01 -0.134 0.168 0.059 PB L2
ENSG00000127603 MACF1 -251250 sc-eQTL 8.02e-01 -0.0574 0.229 0.059 PB L2
ENSG00000168653 NDUFS5 -196252 sc-eQTL 3.16e-01 0.124 0.123 0.059 PB L2
ENSG00000174574 AKIRIN1 -161210 sc-eQTL 4.65e-01 -0.183 0.25 0.059 PB L2
ENSG00000183431 SF3A3 839991 sc-eQTL 6.57e-01 0.1 0.224 0.059 PB L2
ENSG00000183520 UTP11 820808 sc-eQTL 4.87e-01 -0.115 0.164 0.059 PB L2
ENSG00000185668 POU3F1 783273 sc-eQTL 7.21e-02 0.425 0.234 0.059 PB L2
ENSG00000188786 MTF1 970474 sc-eQTL 8.35e-01 0.0529 0.254 0.059 PB L2
ENSG00000198754 OXCT2 -941282 sc-eQTL 1.55e-01 0.31 0.217 0.059 PB L2
ENSG00000204084 INPP5B 883009 sc-eQTL 3.43e-01 0.253 0.266 0.059 PB L2
ENSG00000214114 MYCBP -43302 sc-eQTL 4.02e-01 -0.116 0.138 0.059 PB L2
ENSG00000238063 LINC01685 355241 sc-eQTL 8.50e-01 -0.045 0.237 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116981 NT5C1A -841972 pQTL 0.00988 0.0865 0.0335 0.00142 0.0 0.0372
ENSG00000127603 MACF1 -251250 eQTL 0.0302 0.0923 0.0425 0.0 0.0 0.0373
ENSG00000168653 NDUFS5 -196252 eQTL 1.39e-05 0.212 0.0485 0.0 0.0 0.0373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000168653 NDUFS5 -196252 2.14e-06 2.47e-06 3.33e-07 2.02e-06 4.77e-07 8.21e-07 1.61e-06 6.3e-07 1.76e-06 8.28e-07 2.11e-06 1.37e-06 3.53e-06 1.12e-06 8.08e-07 1.21e-06 9.51e-07 1.79e-06 5.66e-07 1.21e-06 6.59e-07 2.34e-06 1.95e-06 9.95e-07 3.46e-06 1.21e-06 1.31e-06 1.4e-06 1.81e-06 1.86e-06 1.38e-06 2.51e-07 3.94e-07 1.24e-06 1.33e-06 9.92e-07 7.59e-07 4.19e-07 9.39e-07 3.77e-07 2.88e-07 2.75e-06 3.78e-07 2.07e-07 3.62e-07 3.29e-07 5.48e-07 2.22e-07 1.74e-07