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Genes within 1Mb (chr1:38792677:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000084072 PPIE -899505 sc-eQTL 1.28e-01 0.361 0.235 0.055 gdT L2
ENSG00000090621 PABPC4 -784113 sc-eQTL 7.44e-01 -0.0685 0.209 0.055 gdT L2
ENSG00000116954 RRAGC -67095 sc-eQTL 5.75e-02 0.466 0.243 0.055 gdT L2
ENSG00000116985 BMP8B -996188 sc-eQTL 5.61e-01 -0.116 0.199 0.055 gdT L2
ENSG00000127603 MACF1 -288639 sc-eQTL 9.03e-01 -0.0243 0.198 0.055 gdT L2
ENSG00000168653 NDUFS5 -233641 sc-eQTL 3.37e-01 -0.207 0.215 0.055 gdT L2
ENSG00000174574 AKIRIN1 -198599 sc-eQTL 7.52e-01 0.0666 0.21 0.055 gdT L2
ENSG00000183386 FHL3 787071 sc-eQTL 1.67e-01 -0.305 0.219 0.055 gdT L2
ENSG00000183431 SF3A3 802602 sc-eQTL 9.73e-01 -0.00831 0.244 0.055 gdT L2
ENSG00000183520 UTP11 783419 sc-eQTL 2.31e-01 -0.305 0.254 0.055 gdT L2
ENSG00000185090 MANEAL 998875 sc-eQTL 4.05e-01 -0.169 0.203 0.055 gdT L2
ENSG00000185668 POU3F1 745884 sc-eQTL 2.83e-01 0.227 0.211 0.055 gdT L2
ENSG00000188786 MTF1 933085 sc-eQTL 2.07e-01 0.308 0.243 0.055 gdT L2
ENSG00000196449 YRDC 984469 sc-eQTL 5.51e-01 0.124 0.208 0.055 gdT L2
ENSG00000197982 C1orf122 985698 sc-eQTL 5.35e-01 0.134 0.216 0.055 gdT L2
ENSG00000198754 OXCT2 -978671 sc-eQTL 2.16e-01 -0.203 0.163 0.055 gdT L2
ENSG00000204084 INPP5B 845620 sc-eQTL 4.96e-01 -0.157 0.23 0.055 gdT L2
ENSG00000214114 MYCBP -80691 sc-eQTL 4.44e-01 -0.159 0.207 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116983 HPCAL4 -898808 eQTL 0.015 0.098 0.0402 0.0 0.0 0.0304
ENSG00000214114 MYCBP -80691 eQTL 0.0195 -0.0802 0.0343 0.0 0.0 0.0304
ENSG00000230955 AL929472.2 931980 eQTL 0.0384 -0.182 0.0878 0.0 0.0 0.0304

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116983 HPCAL4 -898808 2.67e-07 1.16e-07 3.72e-08 1.8e-07 9.21e-08 1e-07 1.42e-07 5.2e-08 1.41e-07 4.57e-08 1.56e-07 8.14e-08 1.33e-07 6.38e-08 6e-08 7.26e-08 3.94e-08 1.18e-07 5.36e-08 4.42e-08 1.04e-07 1.26e-07 1.32e-07 3.79e-08 1.32e-07 1.16e-07 1.08e-07 9.32e-08 1.05e-07 1.1e-07 9.73e-08 3.66e-08 3.3e-08 8.68e-08 8.38e-08 3.95e-08 5.01e-08 9.36e-08 6.56e-08 3.37e-08 3.82e-08 1.31e-07 4.33e-08 1.97e-08 5.59e-08 1.83e-08 1.19e-07 3.81e-09 4.79e-08