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Genes within 1Mb (chr1:38445176:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 752927 sc-eQTL 6.10e-02 0.341 0.181 0.054 B_Activated L2
ENSG00000116954 RRAGC -414596 sc-eQTL 5.52e-01 0.124 0.209 0.054 B_Activated L2
ENSG00000127603 MACF1 -636140 sc-eQTL 1.42e-01 -0.268 0.181 0.054 B_Activated L2
ENSG00000134697 GNL2 849239 sc-eQTL 1.94e-02 0.55 0.233 0.054 B_Activated L2
ENSG00000163874 ZC3H12A 970596 sc-eQTL 4.37e-02 -0.396 0.195 0.054 B_Activated L2
ENSG00000163875 MEAF6 930402 sc-eQTL 5.89e-01 0.112 0.207 0.054 B_Activated L2
ENSG00000163877 SNIP1 890883 sc-eQTL 5.05e-01 0.14 0.21 0.054 B_Activated L2
ENSG00000168653 NDUFS5 -581142 sc-eQTL 5.92e-01 0.125 0.233 0.054 B_Activated L2
ENSG00000174574 AKIRIN1 -546100 sc-eQTL 3.74e-01 0.197 0.221 0.054 B_Activated L2
ENSG00000183431 SF3A3 455101 sc-eQTL 4.61e-01 -0.161 0.218 0.054 B_Activated L2
ENSG00000183520 UTP11 435918 sc-eQTL 4.21e-01 0.16 0.199 0.054 B_Activated L2
ENSG00000185090 MANEAL 651374 sc-eQTL 4.58e-01 0.134 0.18 0.054 B_Activated L2
ENSG00000185668 POU3F1 398383 sc-eQTL 7.15e-01 -0.0654 0.179 0.054 B_Activated L2
ENSG00000188786 MTF1 585584 sc-eQTL 6.25e-01 0.11 0.225 0.054 B_Activated L2
ENSG00000196449 YRDC 636968 sc-eQTL 6.42e-01 0.0961 0.207 0.054 B_Activated L2
ENSG00000197982 C1orf122 638197 sc-eQTL 9.90e-01 0.00265 0.216 0.054 B_Activated L2
ENSG00000204084 INPP5B 498119 sc-eQTL 2.10e-01 -0.275 0.219 0.054 B_Activated L2
ENSG00000214114 MYCBP -428192 sc-eQTL 1.71e-01 -0.282 0.205 0.054 B_Activated L2
ENSG00000238063 LINC01685 -29649 sc-eQTL 6.30e-01 -0.067 0.139 0.054 B_Activated L2
ENSG00000116922 C1orf109 752927 sc-eQTL 6.58e-01 -0.0935 0.211 0.051 CD8_TCM L2
ENSG00000116954 RRAGC -414596 sc-eQTL 7.73e-01 0.0591 0.204 0.051 CD8_TCM L2
ENSG00000127603 MACF1 -636140 sc-eQTL 3.40e-01 -0.149 0.156 0.051 CD8_TCM L2
ENSG00000134697 GNL2 849239 sc-eQTL 3.05e-01 0.217 0.212 0.051 CD8_TCM L2
ENSG00000163874 ZC3H12A 970596 sc-eQTL 6.30e-01 0.0868 0.18 0.051 CD8_TCM L2
ENSG00000163875 MEAF6 930402 sc-eQTL 2.53e-01 0.218 0.19 0.051 CD8_TCM L2
ENSG00000163877 SNIP1 890883 sc-eQTL 9.46e-01 0.0127 0.186 0.051 CD8_TCM L2
ENSG00000168653 NDUFS5 -581142 sc-eQTL 9.59e-01 -0.0104 0.204 0.051 CD8_TCM L2
ENSG00000174574 AKIRIN1 -546100 sc-eQTL 4.33e-01 -0.16 0.204 0.051 CD8_TCM L2
ENSG00000183386 FHL3 439570 sc-eQTL 3.35e-01 -0.205 0.212 0.051 CD8_TCM L2
ENSG00000183431 SF3A3 455101 sc-eQTL 6.72e-01 0.0815 0.192 0.051 CD8_TCM L2
ENSG00000183520 UTP11 435918 sc-eQTL 3.84e-01 -0.188 0.216 0.051 CD8_TCM L2
ENSG00000185090 MANEAL 651374 sc-eQTL 6.80e-01 0.0727 0.176 0.051 CD8_TCM L2
ENSG00000185668 POU3F1 398383 sc-eQTL 6.08e-01 -0.101 0.196 0.051 CD8_TCM L2
ENSG00000188786 MTF1 585584 sc-eQTL 2.96e-01 0.236 0.225 0.051 CD8_TCM L2
ENSG00000196449 YRDC 636968 sc-eQTL 7.00e-01 -0.0722 0.187 0.051 CD8_TCM L2
ENSG00000197982 C1orf122 638197 sc-eQTL 1.86e-01 0.265 0.2 0.051 CD8_TCM L2
ENSG00000204084 INPP5B 498119 sc-eQTL 9.48e-01 0.0126 0.192 0.051 CD8_TCM L2
ENSG00000214114 MYCBP -428192 sc-eQTL 8.33e-01 0.0397 0.188 0.051 CD8_TCM L2
ENSG00000233621 LINC01137 970765 sc-eQTL 1.13e-01 -0.329 0.207 0.051 CD8_TCM L2
ENSG00000116922 C1orf109 752927 sc-eQTL 1.74e-01 -0.265 0.194 0.05 CD8_TEM L2
ENSG00000116954 RRAGC -414596 sc-eQTL 2.24e-01 0.251 0.206 0.05 CD8_TEM L2
ENSG00000127603 MACF1 -636140 sc-eQTL 6.12e-01 -0.0866 0.171 0.05 CD8_TEM L2
ENSG00000134697 GNL2 849239 sc-eQTL 5.51e-01 0.129 0.216 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A 970596 sc-eQTL 1.17e-01 0.254 0.161 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 930402 sc-eQTL 2.74e-01 0.197 0.18 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 890883 sc-eQTL 4.19e-01 0.16 0.198 0.05 CD8_TEM L2
ENSG00000168653 NDUFS5 -581142 sc-eQTL 1.33e-01 -0.297 0.197 0.05 CD8_TEM L2
ENSG00000174574 AKIRIN1 -546100 sc-eQTL 4.62e-01 -0.16 0.217 0.05 CD8_TEM L2
ENSG00000183386 FHL3 439570 sc-eQTL 4.17e-01 0.174 0.214 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 455101 sc-eQTL 7.89e-01 -0.0598 0.223 0.05 CD8_TEM L2
ENSG00000183520 UTP11 435918 sc-eQTL 8.62e-01 -0.0371 0.212 0.05 CD8_TEM L2
ENSG00000185090 MANEAL 651374 sc-eQTL 8.48e-01 -0.0382 0.199 0.05 CD8_TEM L2
ENSG00000185668 POU3F1 398383 sc-eQTL 5.34e-01 0.121 0.194 0.05 CD8_TEM L2
ENSG00000188786 MTF1 585584 sc-eQTL 4.85e-01 0.15 0.215 0.05 CD8_TEM L2
ENSG00000196449 YRDC 636968 sc-eQTL 2.19e-03 0.629 0.203 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 638197 sc-eQTL 2.23e-01 0.25 0.205 0.05 CD8_TEM L2
ENSG00000204084 INPP5B 498119 sc-eQTL 8.03e-01 -0.0527 0.211 0.05 CD8_TEM L2
ENSG00000214114 MYCBP -428192 sc-eQTL 9.10e-01 0.0219 0.194 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 970765 sc-eQTL 1.57e-01 -0.287 0.202 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 752927 sc-eQTL 9.25e-01 0.0236 0.249 0.052 gdT L2
ENSG00000116954 RRAGC -414596 sc-eQTL 6.17e-01 -0.128 0.256 0.052 gdT L2
ENSG00000127603 MACF1 -636140 sc-eQTL 9.51e-01 -0.0128 0.206 0.052 gdT L2
ENSG00000134690 CDCA8 752695 sc-eQTL 6.41e-01 0.1 0.215 0.052 gdT L2
ENSG00000134697 GNL2 849239 sc-eQTL 3.70e-01 -0.236 0.262 0.052 gdT L2
ENSG00000163874 ZC3H12A 970596 sc-eQTL 2.90e-01 0.195 0.184 0.052 gdT L2
ENSG00000163875 MEAF6 930402 sc-eQTL 6.28e-01 -0.115 0.236 0.052 gdT L2
ENSG00000163877 SNIP1 890883 sc-eQTL 4.26e-01 0.192 0.241 0.052 gdT L2
ENSG00000168653 NDUFS5 -581142 sc-eQTL 9.03e-01 0.0276 0.225 0.052 gdT L2
ENSG00000174574 AKIRIN1 -546100 sc-eQTL 5.39e-01 -0.134 0.218 0.052 gdT L2
ENSG00000183386 FHL3 439570 sc-eQTL 1.11e-01 0.365 0.228 0.052 gdT L2
ENSG00000183431 SF3A3 455101 sc-eQTL 3.65e-01 -0.231 0.254 0.052 gdT L2
ENSG00000183520 UTP11 435918 sc-eQTL 6.90e-01 0.106 0.265 0.052 gdT L2
ENSG00000185090 MANEAL 651374 sc-eQTL 3.05e-01 0.217 0.211 0.052 gdT L2
ENSG00000185668 POU3F1 398383 sc-eQTL 7.65e-01 -0.0659 0.22 0.052 gdT L2
ENSG00000188786 MTF1 585584 sc-eQTL 2.62e-01 0.285 0.253 0.052 gdT L2
ENSG00000196449 YRDC 636968 sc-eQTL 5.84e-01 0.119 0.216 0.052 gdT L2
ENSG00000197982 C1orf122 638197 sc-eQTL 9.23e-01 0.0218 0.225 0.052 gdT L2
ENSG00000204084 INPP5B 498119 sc-eQTL 3.01e-01 0.248 0.239 0.052 gdT L2
ENSG00000214114 MYCBP -428192 sc-eQTL 2.46e-01 0.25 0.215 0.052 gdT L2
ENSG00000233621 LINC01137 970765 sc-eQTL 7.93e-01 -0.0584 0.222 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000168653 NDUFS5 -581142 eQTL 2.48e-02 0.0848 0.0377 0.0 0.0 0.0599
ENSG00000197982 C1orf122 638197 eQTL 4.13e-02 -0.0725 0.0355 0.0 0.0 0.0599
ENSG00000204084 INPP5B 498119 eQTL 0.0169 -0.165 0.0688 0.0 0.0 0.0599
ENSG00000228436 AL139260.1 -414824 eQTL 0.0484 0.167 0.0846 0.00127 0.0 0.0599

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000163879 \N 888257 2.74e-07 1.34e-07 3.72e-08 2.05e-07 9.87e-08 9.76e-08 1.53e-07 5.37e-08 1.4e-07 4.74e-08 1.55e-07 8.14e-08 1.69e-07 7.13e-08 6e-08 7.26e-08 4.09e-08 1.4e-07 6.07e-08 4.1e-08 1.26e-07 1.28e-07 1.39e-07 2.91e-08 1.4e-07 1.14e-07 1.08e-07 9.57e-08 1.09e-07 1.03e-07 1.02e-07 4.58e-08 3.89e-08 9.52e-08 7.51e-08 2.68e-08 6.04e-08 8.63e-08 6.49e-08 5.24e-08 4.51e-08 1.5e-07 4.83e-08 7.2e-09 4.67e-08 1.87e-08 1.26e-07 3.78e-09 4.99e-08