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Genes within 1Mb (chr1:38211839:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 519590 sc-eQTL 3.53e-01 0.163 0.175 0.052 DC L1
ENSG00000116954 RRAGC -647933 sc-eQTL 9.48e-01 -0.0119 0.183 0.052 DC L1
ENSG00000127603 MACF1 -869477 sc-eQTL 1.99e-01 -0.207 0.161 0.052 DC L1
ENSG00000134697 GNL2 615902 sc-eQTL 7.57e-01 0.0582 0.188 0.052 DC L1
ENSG00000163874 ZC3H12A 737259 sc-eQTL 4.80e-01 -0.122 0.172 0.052 DC L1
ENSG00000163875 MEAF6 697065 sc-eQTL 6.79e-01 0.0748 0.18 0.052 DC L1
ENSG00000163877 SNIP1 657546 sc-eQTL 1.02e-01 -0.347 0.211 0.052 DC L1
ENSG00000168653 NDUFS5 -814479 sc-eQTL 5.13e-01 -0.0936 0.143 0.052 DC L1
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 2.90e-01 -0.181 0.17 0.052 DC L1
ENSG00000183386 FHL3 206233 sc-eQTL 5.31e-01 -0.12 0.192 0.052 DC L1
ENSG00000183431 SF3A3 221764 sc-eQTL 5.50e-02 -0.379 0.196 0.052 DC L1
ENSG00000183520 UTP11 202581 sc-eQTL 5.73e-01 0.124 0.219 0.052 DC L1
ENSG00000188786 MTF1 352247 sc-eQTL 7.53e-01 0.0616 0.196 0.052 DC L1
ENSG00000196449 YRDC 403631 sc-eQTL 4.25e-01 0.16 0.201 0.052 DC L1
ENSG00000197982 C1orf122 404860 sc-eQTL 4.44e-01 0.133 0.174 0.052 DC L1
ENSG00000204084 INPP5B 264782 sc-eQTL 1.14e-01 0.305 0.192 0.052 DC L1
ENSG00000214114 MYCBP -661529 sc-eQTL 8.75e-02 0.288 0.168 0.052 DC L1
ENSG00000228436 AL139260.1 -648073 sc-eQTL 7.20e-01 -0.0753 0.21 0.052 DC L1
ENSG00000233621 LINC01137 737428 sc-eQTL 4.08e-01 -0.158 0.19 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 519590 sc-eQTL 8.78e-02 0.304 0.177 0.056 B_Activated L2
ENSG00000116954 RRAGC -647933 sc-eQTL 2.46e-02 -0.457 0.202 0.056 B_Activated L2
ENSG00000127603 MACF1 -869477 sc-eQTL 8.51e-01 -0.0337 0.178 0.056 B_Activated L2
ENSG00000134697 GNL2 615902 sc-eQTL 8.29e-01 0.0502 0.232 0.056 B_Activated L2
ENSG00000163874 ZC3H12A 737259 sc-eQTL 5.72e-01 0.109 0.193 0.056 B_Activated L2
ENSG00000163875 MEAF6 697065 sc-eQTL 3.90e-01 0.174 0.202 0.056 B_Activated L2
ENSG00000163877 SNIP1 657546 sc-eQTL 5.14e-02 -0.399 0.203 0.056 B_Activated L2
ENSG00000168653 NDUFS5 -814479 sc-eQTL 8.68e-01 0.0379 0.228 0.056 B_Activated L2
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 7.72e-01 0.0629 0.217 0.056 B_Activated L2
ENSG00000183431 SF3A3 221764 sc-eQTL 9.03e-01 -0.0261 0.214 0.056 B_Activated L2
ENSG00000183520 UTP11 202581 sc-eQTL 7.69e-01 0.0571 0.195 0.056 B_Activated L2
ENSG00000185090 MANEAL 418037 sc-eQTL 6.11e-01 -0.0899 0.176 0.056 B_Activated L2
ENSG00000185668 POU3F1 165046 sc-eQTL 5.67e-01 -0.1 0.175 0.056 B_Activated L2
ENSG00000188786 MTF1 352247 sc-eQTL 9.03e-01 0.0269 0.22 0.056 B_Activated L2
ENSG00000196449 YRDC 403631 sc-eQTL 8.75e-01 0.0319 0.202 0.056 B_Activated L2
ENSG00000197982 C1orf122 404860 sc-eQTL 3.82e-01 0.184 0.21 0.056 B_Activated L2
ENSG00000204084 INPP5B 264782 sc-eQTL 4.66e-01 0.157 0.215 0.056 B_Activated L2
ENSG00000214114 MYCBP -661529 sc-eQTL 4.06e-01 0.167 0.201 0.056 B_Activated L2
ENSG00000238063 LINC01685 -262986 sc-eQTL 5.24e-01 0.0867 0.136 0.056 B_Activated L2
ENSG00000116922 C1orf109 519590 sc-eQTL 7.90e-01 -0.0544 0.204 0.05 CD4_CTL L2
ENSG00000116954 RRAGC -647933 sc-eQTL 8.47e-02 -0.346 0.2 0.05 CD4_CTL L2
ENSG00000127603 MACF1 -869477 sc-eQTL 9.84e-01 0.00315 0.156 0.05 CD4_CTL L2
ENSG00000134697 GNL2 615902 sc-eQTL 8.58e-02 -0.35 0.203 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A 737259 sc-eQTL 9.78e-01 -0.00503 0.185 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 697065 sc-eQTL 2.23e-01 0.251 0.205 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 657546 sc-eQTL 7.80e-01 -0.0558 0.2 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 -814479 sc-eQTL 7.06e-01 -0.0706 0.187 0.05 CD4_CTL L2
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 8.00e-01 0.0498 0.196 0.05 CD4_CTL L2
ENSG00000183386 FHL3 206233 sc-eQTL 5.09e-01 0.126 0.19 0.05 CD4_CTL L2
ENSG00000183431 SF3A3 221764 sc-eQTL 5.44e-01 0.119 0.195 0.05 CD4_CTL L2
ENSG00000183520 UTP11 202581 sc-eQTL 8.64e-01 0.0334 0.195 0.05 CD4_CTL L2
ENSG00000188786 MTF1 352247 sc-eQTL 9.07e-01 -0.0245 0.208 0.05 CD4_CTL L2
ENSG00000196449 YRDC 403631 sc-eQTL 1.74e-01 -0.269 0.197 0.05 CD4_CTL L2
ENSG00000197982 C1orf122 404860 sc-eQTL 1.27e-01 -0.299 0.195 0.05 CD4_CTL L2
ENSG00000204084 INPP5B 264782 sc-eQTL 7.56e-01 -0.0644 0.207 0.05 CD4_CTL L2
ENSG00000214114 MYCBP -661529 sc-eQTL 8.12e-01 0.0456 0.191 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 737428 sc-eQTL 8.88e-01 -0.0271 0.192 0.05 CD4_CTL L2
ENSG00000116922 C1orf109 519590 sc-eQTL 6.73e-01 0.0888 0.21 0.051 CD8_TCM L2
ENSG00000116954 RRAGC -647933 sc-eQTL 6.88e-01 0.0818 0.203 0.051 CD8_TCM L2
ENSG00000127603 MACF1 -869477 sc-eQTL 4.59e-01 -0.115 0.155 0.051 CD8_TCM L2
ENSG00000134697 GNL2 615902 sc-eQTL 7.36e-01 0.0713 0.211 0.051 CD8_TCM L2
ENSG00000163874 ZC3H12A 737259 sc-eQTL 5.75e-01 -0.1 0.179 0.051 CD8_TCM L2
ENSG00000163875 MEAF6 697065 sc-eQTL 8.91e-01 0.026 0.19 0.051 CD8_TCM L2
ENSG00000163877 SNIP1 657546 sc-eQTL 2.35e-01 0.22 0.185 0.051 CD8_TCM L2
ENSG00000168653 NDUFS5 -814479 sc-eQTL 7.83e-01 -0.056 0.203 0.051 CD8_TCM L2
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 2.07e-01 -0.256 0.202 0.051 CD8_TCM L2
ENSG00000183386 FHL3 206233 sc-eQTL 5.43e-01 0.129 0.211 0.051 CD8_TCM L2
ENSG00000183431 SF3A3 221764 sc-eQTL 6.31e-01 -0.0917 0.191 0.051 CD8_TCM L2
ENSG00000183520 UTP11 202581 sc-eQTL 9.18e-01 0.0223 0.215 0.051 CD8_TCM L2
ENSG00000185090 MANEAL 418037 sc-eQTL 9.67e-01 0.00729 0.175 0.051 CD8_TCM L2
ENSG00000185668 POU3F1 165046 sc-eQTL 5.06e-01 -0.13 0.195 0.051 CD8_TCM L2
ENSG00000188786 MTF1 352247 sc-eQTL 3.28e-01 -0.22 0.224 0.051 CD8_TCM L2
ENSG00000196449 YRDC 403631 sc-eQTL 5.40e-01 0.114 0.186 0.051 CD8_TCM L2
ENSG00000197982 C1orf122 404860 sc-eQTL 3.54e-01 0.185 0.199 0.051 CD8_TCM L2
ENSG00000204084 INPP5B 264782 sc-eQTL 8.31e-01 0.0409 0.191 0.051 CD8_TCM L2
ENSG00000214114 MYCBP -661529 sc-eQTL 4.56e-01 0.139 0.186 0.051 CD8_TCM L2
ENSG00000233621 LINC01137 737428 sc-eQTL 6.97e-01 0.0805 0.207 0.051 CD8_TCM L2
ENSG00000116922 C1orf109 519590 sc-eQTL 6.31e-01 0.101 0.209 0.05 Pro_T L2
ENSG00000116954 RRAGC -647933 sc-eQTL 8.84e-01 -0.0304 0.207 0.05 Pro_T L2
ENSG00000127603 MACF1 -869477 sc-eQTL 3.11e-01 -0.146 0.144 0.05 Pro_T L2
ENSG00000134690 CDCA8 519358 sc-eQTL 9.37e-01 -0.01 0.126 0.05 Pro_T L2
ENSG00000134697 GNL2 615902 sc-eQTL 4.49e-01 0.128 0.169 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 737259 sc-eQTL 6.34e-01 -0.0731 0.153 0.05 Pro_T L2
ENSG00000163875 MEAF6 697065 sc-eQTL 4.66e-01 0.12 0.165 0.05 Pro_T L2
ENSG00000163877 SNIP1 657546 sc-eQTL 4.82e-01 0.138 0.195 0.05 Pro_T L2
ENSG00000168653 NDUFS5 -814479 sc-eQTL 6.62e-01 0.057 0.13 0.05 Pro_T L2
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 2.36e-01 -0.238 0.2 0.05 Pro_T L2
ENSG00000183386 FHL3 206233 sc-eQTL 7.52e-01 0.051 0.161 0.05 Pro_T L2
ENSG00000183431 SF3A3 221764 sc-eQTL 1.58e-01 -0.254 0.18 0.05 Pro_T L2
ENSG00000183520 UTP11 202581 sc-eQTL 9.88e-01 -0.00239 0.155 0.05 Pro_T L2
ENSG00000185090 MANEAL 418037 sc-eQTL 4.97e-01 0.125 0.184 0.05 Pro_T L2
ENSG00000185668 POU3F1 165046 sc-eQTL 7.93e-01 0.0483 0.183 0.05 Pro_T L2
ENSG00000188786 MTF1 352247 sc-eQTL 4.95e-02 0.413 0.209 0.05 Pro_T L2
ENSG00000196449 YRDC 403631 sc-eQTL 4.95e-01 0.129 0.188 0.05 Pro_T L2
ENSG00000197982 C1orf122 404860 sc-eQTL 7.00e-02 -0.313 0.172 0.05 Pro_T L2
ENSG00000204084 INPP5B 264782 sc-eQTL 2.63e-01 -0.232 0.207 0.05 Pro_T L2
ENSG00000214114 MYCBP -661529 sc-eQTL 8.88e-01 0.0194 0.137 0.05 Pro_T L2
ENSG00000233621 LINC01137 737428 sc-eQTL 5.02e-01 0.129 0.191 0.05 Pro_T L2
ENSG00000116922 C1orf109 519590 sc-eQTL 3.40e-01 -0.23 0.24 0.055 gdT L2
ENSG00000116954 RRAGC -647933 sc-eQTL 5.12e-01 -0.162 0.247 0.055 gdT L2
ENSG00000127603 MACF1 -869477 sc-eQTL 3.47e-01 -0.187 0.198 0.055 gdT L2
ENSG00000134690 CDCA8 519358 sc-eQTL 5.09e-02 0.402 0.204 0.055 gdT L2
ENSG00000134697 GNL2 615902 sc-eQTL 8.57e-01 -0.0457 0.254 0.055 gdT L2
ENSG00000163874 ZC3H12A 737259 sc-eQTL 4.89e-01 -0.123 0.178 0.055 gdT L2
ENSG00000163875 MEAF6 697065 sc-eQTL 5.33e-01 0.142 0.228 0.055 gdT L2
ENSG00000163877 SNIP1 657546 sc-eQTL 1.80e-01 0.312 0.232 0.055 gdT L2
ENSG00000168653 NDUFS5 -814479 sc-eQTL 3.73e-01 -0.193 0.216 0.055 gdT L2
ENSG00000174574 AKIRIN1 -779437 sc-eQTL 5.42e-01 0.129 0.211 0.055 gdT L2
ENSG00000183386 FHL3 206233 sc-eQTL 1.42e-01 -0.325 0.22 0.055 gdT L2
ENSG00000183431 SF3A3 221764 sc-eQTL 8.89e-01 0.0344 0.245 0.055 gdT L2
ENSG00000183520 UTP11 202581 sc-eQTL 4.20e-01 -0.207 0.256 0.055 gdT L2
ENSG00000185090 MANEAL 418037 sc-eQTL 7.25e-01 0.0718 0.204 0.055 gdT L2
ENSG00000185668 POU3F1 165046 sc-eQTL 8.56e-01 -0.0387 0.212 0.055 gdT L2
ENSG00000188786 MTF1 352247 sc-eQTL 5.05e-01 -0.164 0.245 0.055 gdT L2
ENSG00000196449 YRDC 403631 sc-eQTL 2.28e-01 -0.252 0.208 0.055 gdT L2
ENSG00000197982 C1orf122 404860 sc-eQTL 7.17e-01 0.0788 0.217 0.055 gdT L2
ENSG00000204084 INPP5B 264782 sc-eQTL 5.55e-02 0.441 0.228 0.055 gdT L2
ENSG00000214114 MYCBP -661529 sc-eQTL 1.13e-01 0.329 0.206 0.055 gdT L2
ENSG00000233621 LINC01137 737428 sc-eQTL 3.61e-01 -0.196 0.214 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000183431 SF3A3 221764 eQTL 0.72 0.0218 0.0607 0.00235 0.0 0.0702
ENSG00000188786 MTF1 352247 eQTL 0.0482 -0.0369 0.0187 0.00102 0.0 0.0702

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116922 \N 519590 3.62e-07 1.7e-07 6.42e-08 2.25e-07 9.94e-08 8.75e-08 2.4e-07 5.89e-08 1.86e-07 1.05e-07 1.86e-07 1.31e-07 2.55e-07 8.07e-08 6.12e-08 1.01e-07 5.27e-08 2.15e-07 7.39e-08 6.16e-08 1.23e-07 1.81e-07 1.73e-07 3.68e-08 2.48e-07 1.56e-07 1.23e-07 1.26e-07 1.39e-07 1.46e-07 1.35e-07 3.9e-08 3.65e-08 9.52e-08 3.97e-08 3.24e-08 4.07e-08 8.2e-08 6.33e-08 4.24e-08 5.71e-08 1.63e-07 4.17e-08 1.43e-08 3.4e-08 1.01e-08 7.97e-08 2e-09 4.67e-08
ENSG00000183386 \N 206233 1.34e-06 1.03e-06 2.56e-07 1.16e-06 3.45e-07 6.02e-07 1.53e-06 3.71e-07 1.42e-06 5.9e-07 1.85e-06 7.53e-07 2.47e-06 2.89e-07 5.69e-07 9.85e-07 9.23e-07 9.45e-07 8.33e-07 6.46e-07 7.59e-07 1.69e-06 1.04e-06 5.59e-07 2.26e-06 7.54e-07 9.01e-07 7.51e-07 1.47e-06 1.23e-06 8.06e-07 1.85e-07 1.89e-07 6.21e-07 5.28e-07 4.39e-07 7.25e-07 2.31e-07 5.03e-07 2.51e-07 2.77e-07 1.58e-06 1.1e-07 6.51e-08 2.62e-07 1.26e-07 2.16e-07 7e-08 1.36e-07
ENSG00000183431 SF3A3 221764 1.28e-06 9.34e-07 3.45e-07 9.87e-07 3.17e-07 5.32e-07 1.59e-06 3.44e-07 1.46e-06 4.65e-07 1.74e-06 6.62e-07 2.1e-06 2.73e-07 5.72e-07 9.16e-07 8.49e-07 7e-07 7.4e-07 6.82e-07 6.51e-07 1.6e-06 8.61e-07 6.35e-07 2.29e-06 6.16e-07 8.29e-07 7.01e-07 1.32e-06 1.23e-06 6.73e-07 1.3e-07 2.19e-07 6.78e-07 5.61e-07 4.4e-07 5.31e-07 1.61e-07 3.93e-07 1.16e-07 2.89e-07 1.59e-06 5.04e-08 4.2e-08 1.66e-07 1.14e-07 2.3e-07 8.73e-08 1.08e-07
ENSG00000188786 MTF1 352247 9.47e-07 5.6e-07 1.11e-07 3.96e-07 9.26e-08 2.08e-07 5.49e-07 1.45e-07 4.61e-07 2.57e-07 7.32e-07 3.68e-07 8.37e-07 1.23e-07 2.18e-07 2.89e-07 3.52e-07 4.2e-07 1.93e-07 1.53e-07 2.01e-07 3.95e-07 3.87e-07 1.63e-07 8.99e-07 2.68e-07 2.62e-07 2.7e-07 3.88e-07 6.47e-07 3.49e-07 7.33e-08 5.19e-08 1.5e-07 3.03e-07 1.18e-07 1.05e-07 7.66e-08 6.63e-08 5.54e-08 5.56e-08 5.96e-07 2.8e-08 1.9e-08 1.25e-07 1.95e-08 1.03e-07 7.14e-09 4.71e-08