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Genes within 1Mb (chr1:38172031:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 479782 sc-eQTL 3.47e-01 -0.183 0.194 0.05 CD8_TEM L2
ENSG00000116954 RRAGC -687741 sc-eQTL 9.42e-01 0.015 0.206 0.05 CD8_TEM L2
ENSG00000127603 MACF1 -909285 sc-eQTL 2.02e-01 0.217 0.17 0.05 CD8_TEM L2
ENSG00000134697 GNL2 576094 sc-eQTL 2.46e-02 0.483 0.213 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A 697451 sc-eQTL 9.31e-03 0.418 0.159 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 657257 sc-eQTL 7.37e-01 0.0606 0.18 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 617738 sc-eQTL 7.04e-01 0.0751 0.198 0.05 CD8_TEM L2
ENSG00000168653 NDUFS5 -854287 sc-eQTL 2.62e-01 0.221 0.197 0.05 CD8_TEM L2
ENSG00000174574 AKIRIN1 -819245 sc-eQTL 6.60e-01 0.0952 0.216 0.05 CD8_TEM L2
ENSG00000183386 FHL3 166425 sc-eQTL 2.62e-01 0.24 0.213 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 181956 sc-eQTL 8.53e-01 0.0413 0.223 0.05 CD8_TEM L2
ENSG00000183520 UTP11 162773 sc-eQTL 9.17e-01 -0.0222 0.212 0.05 CD8_TEM L2
ENSG00000185090 MANEAL 378229 sc-eQTL 8.17e-01 -0.0461 0.199 0.05 CD8_TEM L2
ENSG00000185668 POU3F1 125238 sc-eQTL 5.13e-01 -0.127 0.194 0.05 CD8_TEM L2
ENSG00000188786 MTF1 312439 sc-eQTL 6.06e-01 -0.111 0.214 0.05 CD8_TEM L2
ENSG00000196449 YRDC 363823 sc-eQTL 7.13e-02 0.372 0.205 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 365052 sc-eQTL 8.70e-01 -0.0337 0.205 0.05 CD8_TEM L2
ENSG00000204084 INPP5B 224974 sc-eQTL 4.17e-01 -0.17 0.21 0.05 CD8_TEM L2
ENSG00000214114 MYCBP -701337 sc-eQTL 9.01e-01 0.024 0.194 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 697620 sc-eQTL 3.70e-01 -0.182 0.202 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 479782 sc-eQTL 7.63e-01 -0.0681 0.225 0.063 PB L2
ENSG00000116954 RRAGC -687741 sc-eQTL 3.32e-01 0.218 0.223 0.063 PB L2
ENSG00000127603 MACF1 -909285 sc-eQTL 2.19e-01 -0.247 0.2 0.063 PB L2
ENSG00000134697 GNL2 576094 sc-eQTL 7.03e-01 0.0799 0.209 0.063 PB L2
ENSG00000163874 ZC3H12A 697451 sc-eQTL 4.42e-01 0.148 0.192 0.063 PB L2
ENSG00000163875 MEAF6 657257 sc-eQTL 7.92e-02 0.356 0.201 0.063 PB L2
ENSG00000163877 SNIP1 617738 sc-eQTL 5.27e-01 -0.133 0.209 0.063 PB L2
ENSG00000168653 NDUFS5 -854287 sc-eQTL 5.79e-01 0.0603 0.108 0.063 PB L2
ENSG00000174574 AKIRIN1 -819245 sc-eQTL 4.78e-01 -0.156 0.219 0.063 PB L2
ENSG00000183431 SF3A3 181956 sc-eQTL 3.89e-02 -0.404 0.193 0.063 PB L2
ENSG00000183520 UTP11 162773 sc-eQTL 9.67e-01 0.00604 0.145 0.063 PB L2
ENSG00000185090 MANEAL 378229 sc-eQTL 1.83e-01 0.292 0.218 0.063 PB L2
ENSG00000185668 POU3F1 125238 sc-eQTL 9.13e-01 -0.0229 0.209 0.063 PB L2
ENSG00000188786 MTF1 312439 sc-eQTL 9.68e-01 -0.00898 0.223 0.063 PB L2
ENSG00000196449 YRDC 363823 sc-eQTL 1.89e-01 0.305 0.231 0.063 PB L2
ENSG00000197982 C1orf122 365052 sc-eQTL 5.83e-01 -0.0811 0.147 0.063 PB L2
ENSG00000204084 INPP5B 224974 sc-eQTL 1.64e-01 -0.326 0.232 0.063 PB L2
ENSG00000214114 MYCBP -701337 sc-eQTL 8.57e-01 0.0218 0.121 0.063 PB L2
ENSG00000238063 LINC01685 -302794 sc-eQTL 8.45e-01 0.0408 0.208 0.063 PB L2
ENSG00000116922 C1orf109 479782 sc-eQTL 9.35e-01 0.016 0.194 0.051 cDC L2
ENSG00000116954 RRAGC -687741 sc-eQTL 6.46e-01 -0.104 0.226 0.051 cDC L2
ENSG00000127603 MACF1 -909285 sc-eQTL 1.80e-02 0.423 0.177 0.051 cDC L2
ENSG00000134697 GNL2 576094 sc-eQTL 3.62e-01 0.185 0.203 0.051 cDC L2
ENSG00000163874 ZC3H12A 697451 sc-eQTL 4.26e-01 -0.137 0.172 0.051 cDC L2
ENSG00000163875 MEAF6 657257 sc-eQTL 5.07e-01 0.132 0.198 0.051 cDC L2
ENSG00000163877 SNIP1 617738 sc-eQTL 6.95e-01 -0.085 0.216 0.051 cDC L2
ENSG00000168653 NDUFS5 -854287 sc-eQTL 4.61e-01 0.117 0.158 0.051 cDC L2
ENSG00000174574 AKIRIN1 -819245 sc-eQTL 2.32e-01 0.227 0.189 0.051 cDC L2
ENSG00000183386 FHL3 166425 sc-eQTL 5.16e-01 -0.139 0.214 0.051 cDC L2
ENSG00000183431 SF3A3 181956 sc-eQTL 4.43e-01 0.16 0.209 0.051 cDC L2
ENSG00000183520 UTP11 162773 sc-eQTL 7.91e-01 -0.0613 0.231 0.051 cDC L2
ENSG00000188786 MTF1 312439 sc-eQTL 9.35e-01 0.0181 0.221 0.051 cDC L2
ENSG00000196449 YRDC 363823 sc-eQTL 4.82e-01 0.148 0.21 0.051 cDC L2
ENSG00000197982 C1orf122 365052 sc-eQTL 7.47e-01 -0.0616 0.19 0.051 cDC L2
ENSG00000204084 INPP5B 224974 sc-eQTL 4.80e-01 -0.155 0.219 0.051 cDC L2
ENSG00000214114 MYCBP -701337 sc-eQTL 7.85e-01 -0.0532 0.194 0.051 cDC L2
ENSG00000228436 AL139260.1 -687881 sc-eQTL 3.44e-01 0.197 0.208 0.051 cDC L2
ENSG00000233621 LINC01137 697620 sc-eQTL 1.13e-01 0.317 0.199 0.051 cDC L2
ENSG00000116922 C1orf109 479782 sc-eQTL 5.13e-01 -0.138 0.21 0.051 pDC L2
ENSG00000116954 RRAGC -687741 sc-eQTL 7.01e-01 0.0755 0.196 0.051 pDC L2
ENSG00000127603 MACF1 -909285 sc-eQTL 3.97e-01 0.191 0.226 0.051 pDC L2
ENSG00000134697 GNL2 576094 sc-eQTL 5.00e-01 0.157 0.233 0.051 pDC L2
ENSG00000163874 ZC3H12A 697451 sc-eQTL 5.66e-01 0.137 0.238 0.051 pDC L2
ENSG00000163875 MEAF6 657257 sc-eQTL 1.76e-01 -0.313 0.23 0.051 pDC L2
ENSG00000163877 SNIP1 617738 sc-eQTL 6.06e-01 0.134 0.258 0.051 pDC L2
ENSG00000168653 NDUFS5 -854287 sc-eQTL 5.72e-01 -0.111 0.196 0.051 pDC L2
ENSG00000174574 AKIRIN1 -819245 sc-eQTL 6.52e-03 0.571 0.207 0.051 pDC L2
ENSG00000183386 FHL3 166425 sc-eQTL 8.74e-01 0.0297 0.188 0.051 pDC L2
ENSG00000183431 SF3A3 181956 sc-eQTL 9.29e-01 -0.0214 0.239 0.051 pDC L2
ENSG00000183520 UTP11 162773 sc-eQTL 6.77e-01 0.107 0.257 0.051 pDC L2
ENSG00000188786 MTF1 312439 sc-eQTL 2.70e-01 -0.252 0.228 0.051 pDC L2
ENSG00000196449 YRDC 363823 sc-eQTL 9.72e-02 0.355 0.213 0.051 pDC L2
ENSG00000197982 C1orf122 365052 sc-eQTL 4.66e-01 -0.171 0.235 0.051 pDC L2
ENSG00000204084 INPP5B 224974 sc-eQTL 4.05e-01 -0.187 0.224 0.051 pDC L2
ENSG00000214114 MYCBP -701337 sc-eQTL 5.99e-01 0.0986 0.187 0.051 pDC L2
ENSG00000228436 AL139260.1 -687881 sc-eQTL 1.57e-02 -0.545 0.223 0.051 pDC L2
ENSG00000233621 LINC01137 697620 sc-eQTL 9.59e-01 -0.00999 0.192 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000183386 FHL3 166425 eQTL 0.0126 -0.208 0.0834 0.0 0.0 0.0397
ENSG00000204084 INPP5B 224974 eQTL 0.000403 -0.307 0.0865 0.0 0.0 0.0397
ENSG00000214114 MYCBP -701337 eQTL 0.00608 -0.0882 0.0321 0.00372 0.0 0.0397
ENSG00000230955 AL929472.2 311334 eQTL 0.000131 -0.314 0.0819 0.0 0.0 0.0397
ENSG00000233621 LINC01137 697620 eQTL 0.0466 -0.113 0.0567 0.0 0.0 0.0397

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000183386 FHL3 166425 3.75e-06 3.49e-06 7.79e-07 1.86e-06 1.12e-06 8.19e-07 2.43e-06 9.31e-07 2.88e-06 1.67e-06 3.5e-06 2.2e-06 5.3e-06 1.17e-06 1.07e-06 2.38e-06 1.56e-06 2.38e-06 1.39e-06 9.17e-07 1.93e-06 3.74e-06 3.24e-06 1.71e-06 4.51e-06 1.33e-06 1.82e-06 1.49e-06 3.81e-06 3.08e-06 2.01e-06 5.93e-07 7.92e-07 1.82e-06 1.73e-06 9.43e-07 9.27e-07 4.88e-07 1.23e-06 3.42e-07 6.06e-07 4.1e-06 4.43e-07 1.85e-07 5.01e-07 3.22e-07 7.59e-07 2.72e-07 3.73e-07
ENSG00000230955 AL929472.2 311334 1.24e-06 1e-06 2.77e-07 1.14e-06 3.67e-07 5.96e-07 1.61e-06 4.04e-07 1.42e-06 6.23e-07 1.89e-06 7.84e-07 2.27e-06 2.87e-07 5.32e-07 9.51e-07 9.2e-07 8.55e-07 8.04e-07 5.75e-07 8.18e-07 1.69e-06 8.94e-07 5.47e-07 2.19e-06 7.32e-07 9.37e-07 8.92e-07 1.47e-06 1.25e-06 7.41e-07 2.98e-07 2.67e-07 6.27e-07 5.21e-07 4.91e-07 6.91e-07 2.54e-07 4.74e-07 2.37e-07 3.35e-07 1.62e-06 1.14e-07 9.61e-08 2.85e-07 1.48e-07 2.3e-07 4.82e-08 2.07e-07