Genes within 1Mb (chr1:38100408:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 408159 sc-eQTL 1.80e-01 0.335 0.249 0.052 PB L2
ENSG00000116954 RRAGC -759364 sc-eQTL 5.69e-01 0.142 0.249 0.052 PB L2
ENSG00000127603 MACF1 -980908 sc-eQTL 4.10e-02 -0.454 0.22 0.052 PB L2
ENSG00000134697 GNL2 504471 sc-eQTL 7.36e-01 -0.0784 0.232 0.052 PB L2
ENSG00000163874 ZC3H12A 625828 sc-eQTL 7.66e-01 -0.0641 0.215 0.052 PB L2
ENSG00000163875 MEAF6 585634 sc-eQTL 1.48e-01 0.328 0.225 0.052 PB L2
ENSG00000163877 SNIP1 546115 sc-eQTL 2.89e-01 -0.247 0.232 0.052 PB L2
ENSG00000168653 NDUFS5 -925910 sc-eQTL 2.34e-01 0.144 0.12 0.052 PB L2
ENSG00000174574 AKIRIN1 -890868 sc-eQTL 6.06e-01 -0.126 0.244 0.052 PB L2
ENSG00000183431 SF3A3 110333 sc-eQTL 3.23e-01 -0.217 0.218 0.052 PB L2
ENSG00000183520 UTP11 91150 sc-eQTL 2.95e-01 0.169 0.16 0.052 PB L2
ENSG00000185090 MANEAL 306606 sc-eQTL 6.41e-01 0.114 0.244 0.052 PB L2
ENSG00000185668 POU3F1 53615 sc-eQTL 5.34e-01 0.145 0.232 0.052 PB L2
ENSG00000188786 MTF1 240816 sc-eQTL 1.48e-01 -0.358 0.246 0.052 PB L2
ENSG00000196449 YRDC 292200 sc-eQTL 6.33e-01 0.124 0.258 0.052 PB L2
ENSG00000197982 C1orf122 293429 sc-eQTL 2.82e-01 -0.177 0.163 0.052 PB L2
ENSG00000204084 INPP5B 153351 sc-eQTL 2.65e-01 -0.291 0.26 0.052 PB L2
ENSG00000214114 MYCBP -772960 sc-eQTL 5.05e-01 0.0901 0.135 0.052 PB L2
ENSG00000238063 LINC01685 -374417 sc-eQTL 5.26e-01 -0.147 0.231 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116922 C1orf109 408159 eQTL 0.00127 -0.154 0.0476 0.0 0.0 0.0456
ENSG00000183386 FHL3 94802 eQTL 0.00103 -0.246 0.0747 0.0 0.0 0.0456
ENSG00000183431 SF3A3 110333 eQTL 0.0119 -0.175 0.0696 0.0 0.0 0.0456
ENSG00000197982 C1orf122 293429 eQTL 8.44e-03 0.106 0.0401 0.0 0.0 0.0456
ENSG00000204084 INPP5B 153351 eQTL 8.63e-05 -0.306 0.0775 0.0 0.0 0.0456
ENSG00000214114 MYCBP -772960 eQTL 0.0217 -0.0663 0.0288 0.00157 0.0 0.0456
ENSG00000230955 AL929472.2 239711 eQTL 0.0012 -0.239 0.0737 0.0 0.0 0.0456


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000174574 \N -890868 2.67e-07 1.27e-07 5.03e-08 1.9e-07 9.87e-08 9.05e-08 1.61e-07 5.66e-08 1.45e-07 5.67e-08 1.55e-07 9.19e-08 1.53e-07 7.13e-08 6.12e-08 7.49e-08 4.12e-08 1.4e-07 6.07e-08 4.78e-08 1.25e-07 1.24e-07 1.45e-07 2.91e-08 1.55e-07 1.26e-07 1.13e-07 9.92e-08 1.2e-07 1e-07 1.02e-07 3.54e-08 3.51e-08 8.56e-08 3.46e-08 3.04e-08 5.7e-08 8.51e-08 6.43e-08 3.82e-08 5.34e-08 1.33e-07 5.12e-08 1.12e-08 3.4e-08 1.8e-08 1.15e-07 1.91e-09 4.8e-08
ENSG00000183386 FHL3 94802 5.28e-06 5.93e-06 7.43e-07 3.39e-06 1.73e-06 1.71e-06 7.75e-06 1.21e-06 4.65e-06 3.17e-06 7.68e-06 2.99e-06 9.86e-06 2.17e-06 9.59e-07 4.07e-06 2.92e-06 3.78e-06 1.75e-06 1.71e-06 2.89e-06 6.43e-06 4.86e-06 1.99e-06 8.97e-06 2.4e-06 3.08e-06 1.86e-06 6.27e-06 6.57e-06 2.91e-06 4.84e-07 6.44e-07 2.53e-06 2.16e-06 1.56e-06 1.11e-06 8.34e-07 1.29e-06 8.05e-07 8.74e-07 7.35e-06 6.72e-07 1.54e-07 7.73e-07 8.06e-07 1.02e-06 6.4e-07 6.2e-07
ENSG00000183431 SF3A3 110333 4.6e-06 5.15e-06 6.05e-07 3.1e-06 1.73e-06 1.56e-06 5.66e-06 1.15e-06 5.09e-06 2.99e-06 6.12e-06 3.36e-06 7.67e-06 1.95e-06 1.13e-06 3.74e-06 1.94e-06 3.89e-06 1.47e-06 1.34e-06 2.71e-06 4.83e-06 4.48e-06 1.81e-06 7.97e-06 2.19e-06 2.22e-06 1.78e-06 4.66e-06 4.8e-06 2.79e-06 4.51e-07 7.6e-07 1.95e-06 2.06e-06 1.17e-06 9.95e-07 4.99e-07 8.77e-07 5.64e-07 7.41e-07 5.65e-06 5.08e-07 1.52e-07 7.84e-07 1.1e-06 1.17e-06 6.86e-07 5.44e-07
ENSG00000204084 INPP5B 153351 3.91e-06 3.99e-06 7.38e-07 2.02e-06 1.08e-06 9.7e-07 2.4e-06 9.12e-07 3.03e-06 1.68e-06 3.62e-06 2.56e-06 5.67e-06 1.41e-06 1.06e-06 2.28e-06 1.85e-06 2.38e-06 1.45e-06 9.17e-07 1.98e-06 3.79e-06 3.21e-06 1.87e-06 4.64e-06 1.3e-06 1.8e-06 1.46e-06 3.88e-06 3.1e-06 1.99e-06 5.93e-07 7.92e-07 1.8e-06 1.92e-06 9.23e-07 9.38e-07 4.93e-07 1.32e-06 3.63e-07 4.42e-07 4.17e-06 3.77e-07 1.67e-07 4.19e-07 3.93e-07 7.44e-07 3.03e-07 3.53e-07