Genes within 1Mb (chr1:38090111:A:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 397862 sc-eQTL 2.86e-01 0.262 0.244 0.056 PB L2
ENSG00000116954 RRAGC -769661 sc-eQTL 2.34e-02 0.549 0.239 0.056 PB L2
ENSG00000127603 MACF1 -991205 sc-eQTL 5.03e-01 -0.147 0.219 0.056 PB L2
ENSG00000134697 GNL2 494174 sc-eQTL 3.61e-01 -0.208 0.227 0.056 PB L2
ENSG00000163874 ZC3H12A 615531 sc-eQTL 9.62e-01 0.0101 0.21 0.056 PB L2
ENSG00000163875 MEAF6 575337 sc-eQTL 5.59e-01 -0.13 0.222 0.056 PB L2
ENSG00000163877 SNIP1 535818 sc-eQTL 3.14e-01 -0.23 0.227 0.056 PB L2
ENSG00000168653 NDUFS5 -936207 sc-eQTL 8.90e-01 -0.0164 0.118 0.056 PB L2
ENSG00000174574 AKIRIN1 -901165 sc-eQTL 2.97e-01 0.249 0.238 0.056 PB L2
ENSG00000183431 SF3A3 100036 sc-eQTL 1.81e-01 -0.287 0.213 0.056 PB L2
ENSG00000183520 UTP11 80853 sc-eQTL 8.61e-01 -0.0277 0.158 0.056 PB L2
ENSG00000185090 MANEAL 296309 sc-eQTL 9.13e-01 -0.0261 0.239 0.056 PB L2
ENSG00000185668 POU3F1 43318 sc-eQTL 1.58e-01 -0.32 0.225 0.056 PB L2
ENSG00000188786 MTF1 230519 sc-eQTL 9.85e-01 0.0045 0.243 0.056 PB L2
ENSG00000196449 YRDC 281903 sc-eQTL 9.75e-01 -0.0079 0.253 0.056 PB L2
ENSG00000197982 C1orf122 283132 sc-eQTL 9.70e-01 -0.00615 0.161 0.056 PB L2
ENSG00000204084 INPP5B 143054 sc-eQTL 8.59e-01 -0.0455 0.256 0.056 PB L2
ENSG00000214114 MYCBP -783257 sc-eQTL 8.73e-01 0.0211 0.132 0.056 PB L2
ENSG00000238063 LINC01685 -384714 sc-eQTL 9.76e-01 0.00671 0.227 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116922 C1orf109 397862 eQTL 0.0481 -0.108 0.0544 0.0 0.0 0.0353
ENSG00000134697 GNL2 494174 eQTL 0.000331 0.182 0.0504 0.0 0.0 0.0353
ENSG00000183386 FHL3 84505 eQTL 0.00014 -0.325 0.085 0.0 0.0 0.0353
ENSG00000183431 SF3A3 100036 eQTL 0.00667 -0.216 0.0793 0.0 0.0 0.0353
ENSG00000204084 INPP5B 143054 eQTL 0.000538 -0.307 0.0885 0.0 0.0 0.0353
ENSG00000230955 AL929472.2 229414 eQTL 0.0337 -0.179 0.0842 0.0 0.0 0.0353


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134697 GNL2 494174 8.35e-07 5.18e-07 1.22e-07 3.43e-07 1.07e-07 2.09e-07 5.54e-07 1.78e-07 5.74e-07 2.82e-07 7.32e-07 4.03e-07 7.53e-07 1.34e-07 2.26e-07 2.85e-07 3.69e-07 4.07e-07 2.6e-07 1.55e-07 2.52e-07 4.31e-07 3.81e-07 1.73e-07 7.42e-07 2.54e-07 3.1e-07 2.65e-07 4.15e-07 4.72e-07 2.93e-07 6.13e-08 4.49e-08 1.75e-07 3e-07 1.48e-07 8.43e-08 8.15e-08 5.93e-08 2.62e-08 8.81e-08 4.55e-07 2.92e-08 1.74e-08 1.16e-07 1.27e-08 1.18e-07 1.18e-08 5.96e-08
ENSG00000168653 \N -936207 2.8e-07 1.34e-07 5.64e-08 1.82e-07 9.87e-08 9.48e-08 1.67e-07 5.85e-08 1.5e-07 6.4e-08 1.73e-07 1.11e-07 1.59e-07 7.37e-08 6.25e-08 7.97e-08 4.18e-08 1.51e-07 6.75e-08 4.3e-08 1.25e-07 1.26e-07 1.5e-07 2.91e-08 1.63e-07 1.31e-07 1.18e-07 9.92e-08 1.24e-07 1.05e-07 1.06e-07 3.06e-08 4.02e-08 8.89e-08 5.64e-08 3.05e-08 5.45e-08 8.61e-08 6.63e-08 4.19e-08 5e-08 1.46e-07 5.2e-08 1.57e-08 4.7e-08 1.87e-08 1.2e-07 1.88e-09 5e-08
ENSG00000183386 FHL3 84505 5.81e-06 6.21e-06 1.34e-06 3.83e-06 2.16e-06 2.32e-06 9.06e-06 1.69e-06 5.77e-06 4.01e-06 8.76e-06 3.68e-06 1.1e-05 2.85e-06 1.52e-06 5.49e-06 3.72e-06 4.11e-06 2.64e-06 2.62e-06 4.25e-06 7.69e-06 5.82e-06 3.16e-06 9.57e-06 3.11e-06 3.96e-06 2.34e-06 7.08e-06 7.79e-06 3.57e-06 9.42e-07 1.29e-06 3.14e-06 2.56e-06 2.31e-06 1.87e-06 1.56e-06 1.68e-06 1.01e-06 1.12e-06 8.33e-06 8.82e-07 2.2e-07 8.09e-07 1.3e-06 1.26e-06 8.03e-07 4.62e-07
ENSG00000183431 SF3A3 100036 5.07e-06 5.11e-06 8.27e-07 3.57e-06 1.85e-06 1.52e-06 7.52e-06 1.46e-06 4.64e-06 3.09e-06 7.19e-06 2.83e-06 9.37e-06 1.86e-06 9.3e-07 4.58e-06 2.76e-06 3.73e-06 2.25e-06 2e-06 3.12e-06 6.41e-06 4.81e-06 2.27e-06 8.59e-06 2.49e-06 3.1e-06 1.69e-06 6.27e-06 6.2e-06 2.65e-06 5.87e-07 8.15e-07 2.85e-06 1.97e-06 2.1e-06 1.63e-06 6.94e-07 1.36e-06 9.15e-07 9.26e-07 7.06e-06 6.4e-07 1.61e-07 7.18e-07 8.07e-07 8.85e-07 7.01e-07 4.77e-07
ENSG00000185668 \N 43317 9.84e-06 1.02e-05 2.57e-06 6.7e-06 2.45e-06 5.36e-06 1.31e-05 2.48e-06 1.06e-05 5.52e-06 1.4e-05 6.24e-06 1.88e-05 3.92e-06 3.67e-06 7.43e-06 6.55e-06 1e-05 3.87e-06 3.64e-06 6.67e-06 1.09e-05 1.08e-05 4.9e-06 1.83e-05 5.14e-06 6.81e-06 4.97e-06 1.41e-05 1.27e-05 6.75e-06 1.19e-06 1.55e-06 4.94e-06 5.32e-06 3.83e-06 2.37e-06 2.38e-06 3.21e-06 2.18e-06 1.76e-06 1.35e-05 1.63e-06 4.37e-07 1.97e-06 2.34e-06 2.42e-06 1.26e-06 1.06e-06
ENSG00000204084 INPP5B 143054 4.35e-06 4.28e-06 8.35e-07 2e-06 1.66e-06 1.09e-06 3.02e-06 1.04e-06 4.64e-06 2.09e-06 4.14e-06 3.41e-06 6.82e-06 1.67e-06 1.42e-06 3.34e-06 2.06e-06 2.96e-06 1.48e-06 1.02e-06 2.89e-06 4.53e-06 3.52e-06 1.42e-06 4.86e-06 1.97e-06 2.62e-06 1.79e-06 4.19e-06 3.6e-06 1.95e-06 4.38e-07 5.47e-07 1.65e-06 2.09e-06 1.16e-06 1.06e-06 4.26e-07 9.24e-07 5.04e-07 7.78e-07 4.56e-06 4.34e-07 1.65e-07 6.67e-07 6.75e-07 9.74e-07 5.21e-07 4.68e-07