Genes within 1Mb (chr1:38075756:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 383507 sc-eQTL 2.86e-01 0.262 0.244 0.056 PB L2
ENSG00000116954 RRAGC -784016 sc-eQTL 2.34e-02 0.549 0.239 0.056 PB L2
ENSG00000134697 GNL2 479819 sc-eQTL 3.61e-01 -0.208 0.227 0.056 PB L2
ENSG00000163874 ZC3H12A 601176 sc-eQTL 9.62e-01 0.0101 0.21 0.056 PB L2
ENSG00000163875 MEAF6 560982 sc-eQTL 5.59e-01 -0.13 0.222 0.056 PB L2
ENSG00000163877 SNIP1 521463 sc-eQTL 3.14e-01 -0.23 0.227 0.056 PB L2
ENSG00000168653 NDUFS5 -950562 sc-eQTL 8.90e-01 -0.0164 0.118 0.056 PB L2
ENSG00000174574 AKIRIN1 -915520 sc-eQTL 2.97e-01 0.249 0.238 0.056 PB L2
ENSG00000183431 SF3A3 85681 sc-eQTL 1.81e-01 -0.287 0.213 0.056 PB L2
ENSG00000183520 UTP11 66498 sc-eQTL 8.61e-01 -0.0277 0.158 0.056 PB L2
ENSG00000185090 MANEAL 281954 sc-eQTL 9.13e-01 -0.0261 0.239 0.056 PB L2
ENSG00000185668 POU3F1 28963 sc-eQTL 1.58e-01 -0.32 0.225 0.056 PB L2
ENSG00000188786 MTF1 216164 sc-eQTL 9.85e-01 0.0045 0.243 0.056 PB L2
ENSG00000196449 YRDC 267548 sc-eQTL 9.75e-01 -0.0079 0.253 0.056 PB L2
ENSG00000197982 C1orf122 268777 sc-eQTL 9.70e-01 -0.00615 0.161 0.056 PB L2
ENSG00000204084 INPP5B 128699 sc-eQTL 8.59e-01 -0.0455 0.256 0.056 PB L2
ENSG00000214114 MYCBP -797612 sc-eQTL 8.73e-01 0.0211 0.132 0.056 PB L2
ENSG00000238063 LINC01685 -399069 sc-eQTL 9.76e-01 0.00671 0.227 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116922 C1orf109 383507 eQTL 0.05 -0.106 0.0542 0.0 0.0 0.0353
ENSG00000134697 GNL2 479819 eQTL 0.00033 0.181 0.0502 0.0 0.0 0.0353
ENSG00000183386 FHL3 70150 eQTL 0.000135 -0.324 0.0846 0.0 0.0 0.0353
ENSG00000183431 SF3A3 85681 eQTL 0.00639 -0.216 0.079 0.0 0.0 0.0353
ENSG00000204084 INPP5B 128699 eQTL 0.000652 -0.301 0.0881 0.0 0.0 0.0353
ENSG00000230955 AL929472.2 215059 eQTL 0.0365 -0.176 0.0838 0.0 0.0 0.0353


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134697 GNL2 479819 5.37e-07 3.12e-07 6.99e-08 2.66e-07 1.02e-07 1.25e-07 3.57e-07 7.79e-08 2.56e-07 1.5e-07 3.47e-07 2.28e-07 4.27e-07 9.48e-08 1.18e-07 1.17e-07 8.64e-08 2.75e-07 9.69e-08 8.87e-08 1.34e-07 2.3e-07 2.33e-07 5.11e-08 4.27e-07 1.76e-07 1.74e-07 1.69e-07 1.98e-07 2.01e-07 1.93e-07 5.01e-08 4.97e-08 9.09e-08 1.54e-07 4.6e-08 6.2e-08 7.25e-08 5.27e-08 7.53e-08 4.9e-08 2.71e-07 3.37e-08 1.14e-08 5.4e-08 8.24e-09 9.1e-08 2.23e-09 4.72e-08
ENSG00000168653 \N -950562 2.67e-07 1.19e-07 3.72e-08 1.82e-07 8.83e-08 9.87e-08 1.42e-07 5.19e-08 1.41e-07 4.57e-08 1.6e-07 8.36e-08 1.41e-07 6.56e-08 5.99e-08 7.17e-08 3.9e-08 1.18e-07 5.36e-08 4.21e-08 1.04e-07 1.23e-07 1.32e-07 4.05e-08 1.37e-07 1.14e-07 1.08e-07 9.36e-08 1.05e-07 1.12e-07 9.64e-08 4.22e-08 3.26e-08 8.65e-08 8.94e-08 3.96e-08 4.84e-08 9.6e-08 7.58e-08 3.55e-08 4.41e-08 1.33e-07 4.33e-08 2.79e-08 5.59e-08 1.66e-08 1.23e-07 4.04e-09 4.79e-08
ENSG00000183386 FHL3 70150 5.92e-06 7.85e-06 7.06e-07 4.01e-06 1.74e-06 2.16e-06 8.96e-06 1.26e-06 5.5e-06 3.57e-06 8.95e-06 3.57e-06 1.12e-05 3.27e-06 1.29e-06 4.63e-06 3.13e-06 3.82e-06 2.15e-06 1.69e-06 2.93e-06 7.38e-06 5.5e-06 1.93e-06 1.04e-05 2.29e-06 3.64e-06 2.36e-06 6.89e-06 7.58e-06 3.94e-06 4.88e-07 8.03e-07 2.75e-06 2.69e-06 1.54e-06 1.19e-06 6.48e-07 1.38e-06 8.57e-07 8.74e-07 8.2e-06 7.18e-07 1.33e-07 6.96e-07 8.35e-07 9.61e-07 6.96e-07 6.17e-07
ENSG00000183431 SF3A3 85681 5.08e-06 5.68e-06 7.1e-07 3.36e-06 1.61e-06 1.58e-06 7e-06 1.19e-06 4.82e-06 2.76e-06 7.19e-06 3.03e-06 8.81e-06 2.09e-06 1.04e-06 3.84e-06 1.92e-06 3.95e-06 1.44e-06 1.21e-06 2.71e-06 5.41e-06 4.78e-06 1.71e-06 9.06e-06 1.97e-06 2.28e-06 1.78e-06 5.1e-06 5.27e-06 2.65e-06 4.38e-07 5.4e-07 2.1e-06 2.01e-06 1.17e-06 1.03e-06 4.38e-07 8.54e-07 6.22e-07 7.46e-07 6.85e-06 4.73e-07 1.61e-07 6.1e-07 1.13e-06 1.15e-06 5.83e-07 3.29e-07
ENSG00000185668 \N 28962 1.29e-05 1.45e-05 2.43e-06 9e-06 2.45e-06 6.22e-06 1.96e-05 2.46e-06 1.45e-05 7.13e-06 1.84e-05 7.38e-06 2.53e-05 5.53e-06 4.38e-06 9.08e-06 7.72e-06 1.18e-05 4.28e-06 3.85e-06 7.03e-06 1.35e-05 1.37e-05 4.8e-06 2.49e-05 4.96e-06 7.65e-06 6.14e-06 1.59e-05 1.54e-05 9.85e-06 9.89e-07 1.44e-06 4.2e-06 6.68e-06 3.78e-06 1.84e-06 2.39e-06 2.8e-06 2e-06 1.48e-06 1.79e-05 2.14e-06 3.43e-07 1.29e-06 2.44e-06 2.51e-06 9.11e-07 6.66e-07
ENSG00000204084 INPP5B 128699 3.91e-06 4.28e-06 4.52e-07 1.8e-06 7.73e-07 8.19e-07 2.4e-06 1.02e-06 2.98e-06 1.65e-06 3.95e-06 2.48e-06 5.88e-06 1.49e-06 1e-06 1.99e-06 1.58e-06 2.12e-06 1.48e-06 1.19e-06 1.39e-06 3.45e-06 3.17e-06 1.6e-06 4.75e-06 1.21e-06 1.79e-06 1.45e-06 3.9e-06 3e-06 1.94e-06 3.28e-07 5.97e-07 1.65e-06 1.98e-06 9.35e-07 9.07e-07 4.23e-07 1.23e-06 3.28e-07 2.37e-07 4.1e-06 5.74e-07 1.86e-07 3.68e-07 3.49e-07 8.56e-07 1.83e-07 1.79e-07