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Genes within 1Mb (chr1:38010195:TATC:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 317946 sc-eQTL 3.61e-01 -0.193 0.211 0.051 CD8_TCM L2
ENSG00000116954 RRAGC -849577 sc-eQTL 8.94e-01 -0.0274 0.205 0.051 CD8_TCM L2
ENSG00000134697 GNL2 414258 sc-eQTL 1.53e-02 0.513 0.21 0.051 CD8_TCM L2
ENSG00000163874 ZC3H12A 535615 sc-eQTL 5.05e-01 -0.12 0.18 0.051 CD8_TCM L2
ENSG00000163875 MEAF6 495421 sc-eQTL 6.28e-01 -0.093 0.191 0.051 CD8_TCM L2
ENSG00000163877 SNIP1 455902 sc-eQTL 6.39e-01 0.0879 0.187 0.051 CD8_TCM L2
ENSG00000174574 AKIRIN1 -981081 sc-eQTL 8.17e-01 -0.0476 0.205 0.051 CD8_TCM L2
ENSG00000183386 FHL3 4589 sc-eQTL 9.41e-01 -0.0158 0.213 0.051 CD8_TCM L2
ENSG00000183431 SF3A3 20120 sc-eQTL 4.24e-01 0.154 0.192 0.051 CD8_TCM L2
ENSG00000183520 UTP11 937 sc-eQTL 7.42e-01 -0.0716 0.217 0.051 CD8_TCM L2
ENSG00000185090 MANEAL 216393 sc-eQTL 7.29e-01 0.0614 0.177 0.051 CD8_TCM L2
ENSG00000185668 POU3F1 -36598 sc-eQTL 8.88e-01 0.0277 0.197 0.051 CD8_TCM L2
ENSG00000188786 MTF1 150603 sc-eQTL 3.88e-01 -0.196 0.226 0.051 CD8_TCM L2
ENSG00000196449 YRDC 201987 sc-eQTL 3.40e-01 -0.179 0.187 0.051 CD8_TCM L2
ENSG00000197982 C1orf122 203216 sc-eQTL 7.98e-01 0.0516 0.201 0.051 CD8_TCM L2
ENSG00000204084 INPP5B 63138 sc-eQTL 6.18e-01 0.0963 0.193 0.051 CD8_TCM L2
ENSG00000214114 MYCBP -863173 sc-eQTL 3.32e-02 0.399 0.186 0.051 CD8_TCM L2
ENSG00000233621 LINC01137 535784 sc-eQTL 5.66e-01 -0.12 0.209 0.051 CD8_TCM L2
ENSG00000116922 C1orf109 317946 sc-eQTL 9.05e-01 0.0257 0.215 0.05 Pro_T L2
ENSG00000116954 RRAGC -849577 sc-eQTL 8.36e-01 0.0442 0.213 0.05 Pro_T L2
ENSG00000134690 CDCA8 317714 sc-eQTL 9.78e-01 0.00357 0.13 0.05 Pro_T L2
ENSG00000134697 GNL2 414258 sc-eQTL 7.36e-02 0.31 0.173 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 535615 sc-eQTL 1.69e-02 0.375 0.156 0.05 Pro_T L2
ENSG00000163875 MEAF6 495421 sc-eQTL 1.46e-01 0.246 0.169 0.05 Pro_T L2
ENSG00000163877 SNIP1 455902 sc-eQTL 5.73e-01 0.113 0.201 0.05 Pro_T L2
ENSG00000174574 AKIRIN1 -981081 sc-eQTL 2.56e-01 0.234 0.206 0.05 Pro_T L2
ENSG00000183386 FHL3 4589 sc-eQTL 7.84e-01 -0.0457 0.166 0.05 Pro_T L2
ENSG00000183431 SF3A3 20120 sc-eQTL 3.18e-01 -0.185 0.185 0.05 Pro_T L2
ENSG00000183520 UTP11 937 sc-eQTL 5.43e-02 -0.306 0.158 0.05 Pro_T L2
ENSG00000185090 MANEAL 216393 sc-eQTL 4.82e-01 0.133 0.189 0.05 Pro_T L2
ENSG00000185668 POU3F1 -36598 sc-eQTL 7.50e-01 0.0603 0.189 0.05 Pro_T L2
ENSG00000188786 MTF1 150603 sc-eQTL 8.18e-01 0.0501 0.217 0.05 Pro_T L2
ENSG00000196449 YRDC 201987 sc-eQTL 8.70e-01 -0.0317 0.193 0.05 Pro_T L2
ENSG00000197982 C1orf122 203216 sc-eQTL 2.28e-01 0.214 0.177 0.05 Pro_T L2
ENSG00000204084 INPP5B 63138 sc-eQTL 2.43e-01 0.249 0.213 0.05 Pro_T L2
ENSG00000214114 MYCBP -863173 sc-eQTL 4.70e-01 0.102 0.141 0.05 Pro_T L2
ENSG00000233621 LINC01137 535784 sc-eQTL 1.16e-01 -0.309 0.196 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134697 GNL2 414258 eQTL 0.0326 0.085 0.0397 0.0 0.0 0.0608
ENSG00000188786 MTF1 150603 eQTL 0.0297 0.0418 0.0192 0.00159 0.0 0.0608

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116954 \N -849577 5.14e-07 6.26e-07 4.98e-08 2.57e-07 1.03e-07 8.4e-08 3.57e-07 5.21e-08 1.75e-07 4.57e-08 1.76e-07 8.68e-08 2.38e-07 8.66e-08 5.55e-08 7.17e-08 4.31e-08 1.27e-07 5.21e-08 3.59e-08 1.21e-07 1.28e-07 1.73e-07 4.82e-08 1.55e-07 1.14e-07 1.08e-07 9.15e-08 1.32e-07 1e-07 1.26e-07 3.29e-08 2.75e-08 8.25e-08 4.78e-08 3.96e-08 4.96e-08 8.78e-08 8.14e-08 3.69e-08 3.31e-08 2.6e-07 3.91e-08 1.22e-08 9.21e-08 1.8e-08 1.25e-07 4.96e-09 4.61e-08
ENSG00000134697 GNL2 414258 1.34e-06 1.33e-06 1.55e-07 3.63e-07 9.23e-08 3.26e-07 1.47e-06 5.2e-08 7.56e-07 1.21e-07 9.47e-07 2.22e-07 9.97e-07 2.5e-07 6.6e-08 9.35e-08 3.69e-07 3.39e-07 7.11e-08 4.3e-08 1.87e-07 2.45e-07 7.08e-07 2.93e-08 6.65e-07 1.94e-07 1.74e-07 1.17e-07 6.62e-07 4.61e-07 4.61e-07 3.41e-08 2.74e-08 1.21e-07 3.57e-07 3.36e-08 4.51e-08 9.62e-08 7.52e-08 3.55e-08 4.02e-08 1.62e-06 4.83e-08 1.14e-08 4.7e-08 1.68e-08 9.29e-08 4.7e-09 4.73e-08