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Genes within 1Mb (chr1:37908353:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 216104 sc-eQTL 2.42e-01 -0.234 0.199 0.053 CD8_TEM L2
ENSG00000116954 RRAGC -951419 sc-eQTL 2.17e-01 0.262 0.211 0.053 CD8_TEM L2
ENSG00000134697 GNL2 312416 sc-eQTL 7.67e-01 0.0658 0.222 0.053 CD8_TEM L2
ENSG00000163874 ZC3H12A 433773 sc-eQTL 7.45e-01 -0.0542 0.166 0.053 CD8_TEM L2
ENSG00000163875 MEAF6 393579 sc-eQTL 4.37e-01 0.144 0.185 0.053 CD8_TEM L2
ENSG00000163877 SNIP1 354060 sc-eQTL 3.75e-01 0.18 0.203 0.053 CD8_TEM L2
ENSG00000183386 FHL3 -97253 sc-eQTL 2.05e-02 0.507 0.217 0.053 CD8_TEM L2
ENSG00000183431 SF3A3 -81722 sc-eQTL 1.93e-01 -0.298 0.228 0.053 CD8_TEM L2
ENSG00000183520 UTP11 -100905 sc-eQTL 2.18e-01 -0.268 0.217 0.053 CD8_TEM L2
ENSG00000185090 MANEAL 114551 sc-eQTL 3.98e-01 0.173 0.204 0.053 CD8_TEM L2
ENSG00000185668 POU3F1 -138440 sc-eQTL 4.18e-01 -0.161 0.199 0.053 CD8_TEM L2
ENSG00000188786 MTF1 48761 sc-eQTL 6.45e-01 -0.102 0.22 0.053 CD8_TEM L2
ENSG00000196449 YRDC 100145 sc-eQTL 2.67e-01 0.236 0.212 0.053 CD8_TEM L2
ENSG00000197982 C1orf122 101374 sc-eQTL 3.37e-01 -0.202 0.21 0.053 CD8_TEM L2
ENSG00000204084 INPP5B -38704 sc-eQTL 5.62e-01 -0.125 0.216 0.053 CD8_TEM L2
ENSG00000214114 MYCBP -965015 sc-eQTL 7.68e-01 0.0588 0.199 0.053 CD8_TEM L2
ENSG00000233621 LINC01137 433942 sc-eQTL 3.71e-01 -0.186 0.208 0.053 CD8_TEM L2
ENSG00000116922 C1orf109 216104 sc-eQTL 8.88e-01 -0.0336 0.237 0.059 PB L2
ENSG00000116954 RRAGC -951419 sc-eQTL 2.87e-01 0.252 0.235 0.059 PB L2
ENSG00000134697 GNL2 312416 sc-eQTL 2.32e-01 -0.263 0.219 0.059 PB L2
ENSG00000163874 ZC3H12A 433773 sc-eQTL 2.36e-01 0.241 0.202 0.059 PB L2
ENSG00000163875 MEAF6 393579 sc-eQTL 8.81e-02 0.365 0.212 0.059 PB L2
ENSG00000163877 SNIP1 354060 sc-eQTL 5.67e-01 -0.127 0.22 0.059 PB L2
ENSG00000183431 SF3A3 -81722 sc-eQTL 2.33e-01 -0.248 0.206 0.059 PB L2
ENSG00000183520 UTP11 -100905 sc-eQTL 8.81e-01 -0.0228 0.152 0.059 PB L2
ENSG00000185090 MANEAL 114551 sc-eQTL 1.94e-01 -0.3 0.229 0.059 PB L2
ENSG00000185668 POU3F1 -138440 sc-eQTL 8.00e-01 0.0558 0.22 0.059 PB L2
ENSG00000188786 MTF1 48761 sc-eQTL 5.94e-01 0.126 0.235 0.059 PB L2
ENSG00000196449 YRDC 100145 sc-eQTL 7.69e-01 0.072 0.245 0.059 PB L2
ENSG00000197982 C1orf122 101374 sc-eQTL 6.03e-01 0.081 0.155 0.059 PB L2
ENSG00000204084 INPP5B -38704 sc-eQTL 2.46e-01 0.286 0.246 0.059 PB L2
ENSG00000214114 MYCBP -965015 sc-eQTL 8.03e-01 0.0321 0.128 0.059 PB L2
ENSG00000238063 LINC01685 -566472 sc-eQTL 3.97e-01 0.186 0.219 0.059 PB L2
ENSG00000116922 C1orf109 216104 sc-eQTL 4.82e-01 -0.151 0.215 0.05 Pro_T L2
ENSG00000116954 RRAGC -951419 sc-eQTL 3.83e-01 -0.186 0.213 0.05 Pro_T L2
ENSG00000134690 CDCA8 215872 sc-eQTL 8.98e-01 -0.0167 0.13 0.05 Pro_T L2
ENSG00000134697 GNL2 312416 sc-eQTL 4.50e-01 -0.131 0.174 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 433773 sc-eQTL 8.77e-01 0.0245 0.158 0.05 Pro_T L2
ENSG00000163875 MEAF6 393579 sc-eQTL 6.64e-02 0.31 0.168 0.05 Pro_T L2
ENSG00000163877 SNIP1 354060 sc-eQTL 8.02e-01 0.0505 0.201 0.05 Pro_T L2
ENSG00000183386 FHL3 -97253 sc-eQTL 2.11e-01 0.208 0.165 0.05 Pro_T L2
ENSG00000183431 SF3A3 -81722 sc-eQTL 8.65e-03 -0.484 0.183 0.05 Pro_T L2
ENSG00000183520 UTP11 -100905 sc-eQTL 3.54e-01 0.148 0.159 0.05 Pro_T L2
ENSG00000185090 MANEAL 114551 sc-eQTL 8.19e-02 0.328 0.188 0.05 Pro_T L2
ENSG00000185668 POU3F1 -138440 sc-eQTL 7.35e-02 0.337 0.187 0.05 Pro_T L2
ENSG00000188786 MTF1 48761 sc-eQTL 6.26e-01 -0.106 0.217 0.05 Pro_T L2
ENSG00000196449 YRDC 100145 sc-eQTL 1.52e-01 0.277 0.192 0.05 Pro_T L2
ENSG00000197982 C1orf122 101374 sc-eQTL 4.16e-01 0.145 0.178 0.05 Pro_T L2
ENSG00000204084 INPP5B -38704 sc-eQTL 4.56e-01 -0.159 0.213 0.05 Pro_T L2
ENSG00000214114 MYCBP -965015 sc-eQTL 5.64e-01 0.0817 0.141 0.05 Pro_T L2
ENSG00000233621 LINC01137 433942 sc-eQTL 5.42e-01 -0.12 0.197 0.05 Pro_T L2
ENSG00000116922 C1orf109 216104 sc-eQTL 4.08e-01 -0.162 0.195 0.051 intMono L2
ENSG00000116954 RRAGC -951419 sc-eQTL 1.91e-01 -0.294 0.224 0.051 intMono L2
ENSG00000134697 GNL2 312416 sc-eQTL 6.14e-01 -0.11 0.217 0.051 intMono L2
ENSG00000163874 ZC3H12A 433773 sc-eQTL 8.93e-01 -0.0238 0.177 0.051 intMono L2
ENSG00000163875 MEAF6 393579 sc-eQTL 1.30e-01 0.325 0.214 0.051 intMono L2
ENSG00000163877 SNIP1 354060 sc-eQTL 3.23e-01 0.205 0.206 0.051 intMono L2
ENSG00000183386 FHL3 -97253 sc-eQTL 6.84e-01 0.0831 0.204 0.051 intMono L2
ENSG00000183431 SF3A3 -81722 sc-eQTL 2.95e-01 -0.22 0.21 0.051 intMono L2
ENSG00000183520 UTP11 -100905 sc-eQTL 1.06e-01 0.318 0.195 0.051 intMono L2
ENSG00000188786 MTF1 48761 sc-eQTL 7.41e-01 -0.0708 0.214 0.051 intMono L2
ENSG00000196449 YRDC 100145 sc-eQTL 9.66e-01 0.00863 0.205 0.051 intMono L2
ENSG00000197982 C1orf122 101374 sc-eQTL 3.62e-02 -0.386 0.183 0.051 intMono L2
ENSG00000204084 INPP5B -38704 sc-eQTL 8.97e-01 0.0271 0.21 0.051 intMono L2
ENSG00000214114 MYCBP -965015 sc-eQTL 8.15e-02 0.349 0.199 0.051 intMono L2
ENSG00000228436 AL139260.1 -951559 sc-eQTL 2.95e-02 0.428 0.195 0.051 intMono L2
ENSG00000233621 LINC01137 433942 sc-eQTL 2.29e-01 0.232 0.192 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116954 RRAGC -951419 eQTL 0.0704 -0.0931 0.0514 0.0011 0.0 0.0378
ENSG00000183431 SF3A3 -81722 eQTL 0.0434 0.162 0.0799 0.0 0.0 0.0378
ENSG00000185090 MANEAL 114551 eQTL 0.0142 -0.145 0.059 0.002 0.0 0.0378
ENSG00000197982 C1orf122 101374 eQTL 6.28e-03 -0.126 0.0459 0.0 0.0 0.0378

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000233621 \N 433942 5.14e-07 4.24e-07 7.72e-08 3.19e-07 1.02e-07 1.26e-07 3.44e-07 7.56e-08 2.78e-07 1.78e-07 3.32e-07 1.91e-07 5.54e-07 1.1e-07 1.24e-07 1.53e-07 9.53e-08 3.3e-07 9.69e-08 8.1e-08 1.68e-07 2.48e-07 2.26e-07 5.01e-08 4.27e-07 1.9e-07 1.57e-07 1.95e-07 1.6e-07 2.19e-07 2e-07 7.5e-08 5.2e-08 1.03e-07 8.75e-08 6.83e-08 7.97e-08 6.66e-08 5.4e-08 8.3e-08 5e-08 3.27e-07 4.36e-08 1.57e-08 4.91e-08 1.78e-08 8.93e-08 2.71e-09 5.56e-08