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Genes within 1Mb (chr1:37745017:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 52768 sc-eQTL 8.41e-01 0.0386 0.193 0.052 CD4_CTL L2
ENSG00000134697 GNL2 149080 sc-eQTL 6.70e-01 0.082 0.192 0.052 CD4_CTL L2
ENSG00000163874 ZC3H12A 270437 sc-eQTL 4.14e-01 0.142 0.174 0.052 CD4_CTL L2
ENSG00000163875 MEAF6 230243 sc-eQTL 3.58e-01 -0.178 0.193 0.052 CD4_CTL L2
ENSG00000163877 SNIP1 190724 sc-eQTL 2.27e-01 -0.227 0.188 0.052 CD4_CTL L2
ENSG00000183386 FHL3 -260589 sc-eQTL 7.22e-02 -0.322 0.178 0.052 CD4_CTL L2
ENSG00000183431 SF3A3 -245058 sc-eQTL 8.09e-01 -0.0445 0.184 0.052 CD4_CTL L2
ENSG00000183520 UTP11 -264241 sc-eQTL 8.28e-01 -0.0401 0.184 0.052 CD4_CTL L2
ENSG00000188786 MTF1 -114575 sc-eQTL 6.28e-01 -0.0951 0.196 0.052 CD4_CTL L2
ENSG00000196449 YRDC -63191 sc-eQTL 5.52e-01 0.111 0.187 0.052 CD4_CTL L2
ENSG00000197982 C1orf122 -61962 sc-eQTL 8.40e-01 0.0374 0.185 0.052 CD4_CTL L2
ENSG00000204084 INPP5B -202040 sc-eQTL 2.16e-01 0.242 0.195 0.052 CD4_CTL L2
ENSG00000233621 LINC01137 270606 sc-eQTL 4.32e-01 0.142 0.181 0.052 CD4_CTL L2
ENSG00000116922 C1orf109 52768 sc-eQTL 6.62e-01 0.0863 0.197 0.053 CD8_TCM L2
ENSG00000134697 GNL2 149080 sc-eQTL 5.62e-01 0.115 0.198 0.053 CD8_TCM L2
ENSG00000163874 ZC3H12A 270437 sc-eQTL 3.36e-01 0.162 0.168 0.053 CD8_TCM L2
ENSG00000163875 MEAF6 230243 sc-eQTL 7.55e-01 0.0556 0.178 0.053 CD8_TCM L2
ENSG00000163877 SNIP1 190724 sc-eQTL 5.97e-01 -0.0921 0.174 0.053 CD8_TCM L2
ENSG00000183386 FHL3 -260589 sc-eQTL 3.55e-02 -0.415 0.196 0.053 CD8_TCM L2
ENSG00000183431 SF3A3 -245058 sc-eQTL 4.13e-01 0.147 0.179 0.053 CD8_TCM L2
ENSG00000183520 UTP11 -264241 sc-eQTL 4.77e-01 0.144 0.202 0.053 CD8_TCM L2
ENSG00000185090 MANEAL -48785 sc-eQTL 7.94e-01 0.0429 0.164 0.053 CD8_TCM L2
ENSG00000185668 POU3F1 -301776 sc-eQTL 2.80e-01 0.198 0.183 0.053 CD8_TCM L2
ENSG00000188786 MTF1 -114575 sc-eQTL 7.38e-01 -0.0706 0.211 0.053 CD8_TCM L2
ENSG00000196449 YRDC -63191 sc-eQTL 5.63e-01 -0.101 0.175 0.053 CD8_TCM L2
ENSG00000197982 C1orf122 -61962 sc-eQTL 1.93e-01 -0.244 0.187 0.053 CD8_TCM L2
ENSG00000204084 INPP5B -202040 sc-eQTL 8.38e-01 -0.0367 0.18 0.053 CD8_TCM L2
ENSG00000233621 LINC01137 270606 sc-eQTL 1.63e-01 0.271 0.193 0.053 CD8_TCM L2
ENSG00000116922 C1orf109 52768 sc-eQTL 6.89e-01 -0.0868 0.217 0.067 PB L2
ENSG00000134697 GNL2 149080 sc-eQTL 2.74e-01 0.22 0.2 0.067 PB L2
ENSG00000163874 ZC3H12A 270437 sc-eQTL 7.81e-01 -0.0517 0.185 0.067 PB L2
ENSG00000163875 MEAF6 230243 sc-eQTL 1.14e-01 0.309 0.194 0.067 PB L2
ENSG00000163877 SNIP1 190724 sc-eQTL 1.55e-03 0.625 0.193 0.067 PB L2
ENSG00000183431 SF3A3 -245058 sc-eQTL 2.41e-01 0.222 0.188 0.067 PB L2
ENSG00000183520 UTP11 -264241 sc-eQTL 8.29e-01 -0.0301 0.139 0.067 PB L2
ENSG00000185090 MANEAL -48785 sc-eQTL 3.40e-01 0.202 0.21 0.067 PB L2
ENSG00000185668 POU3F1 -301776 sc-eQTL 8.86e-01 -0.0288 0.201 0.067 PB L2
ENSG00000188786 MTF1 -114575 sc-eQTL 5.55e-01 0.127 0.214 0.067 PB L2
ENSG00000196449 YRDC -63191 sc-eQTL 6.76e-01 -0.0935 0.223 0.067 PB L2
ENSG00000197982 C1orf122 -61962 sc-eQTL 7.62e-01 0.043 0.142 0.067 PB L2
ENSG00000204084 INPP5B -202040 sc-eQTL 1.12e-01 -0.358 0.223 0.067 PB L2
ENSG00000238063 LINC01685 -729808 sc-eQTL 9.61e-01 -0.00991 0.2 0.067 PB L2
ENSG00000116922 C1orf109 52768 sc-eQTL 6.94e-01 0.0789 0.2 0.05 Pro_T L2
ENSG00000134690 CDCA8 52536 sc-eQTL 9.76e-01 -0.00358 0.121 0.05 Pro_T L2
ENSG00000134697 GNL2 149080 sc-eQTL 6.27e-01 0.0786 0.162 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 270437 sc-eQTL 1.76e-01 -0.198 0.146 0.05 Pro_T L2
ENSG00000163875 MEAF6 230243 sc-eQTL 2.67e-01 0.175 0.157 0.05 Pro_T L2
ENSG00000163877 SNIP1 190724 sc-eQTL 6.05e-01 0.0969 0.187 0.05 Pro_T L2
ENSG00000183386 FHL3 -260589 sc-eQTL 9.70e-01 -0.00574 0.154 0.05 Pro_T L2
ENSG00000183431 SF3A3 -245058 sc-eQTL 4.64e-01 -0.126 0.172 0.05 Pro_T L2
ENSG00000183520 UTP11 -264241 sc-eQTL 6.16e-01 -0.0743 0.148 0.05 Pro_T L2
ENSG00000185090 MANEAL -48785 sc-eQTL 6.68e-01 -0.0754 0.176 0.05 Pro_T L2
ENSG00000185668 POU3F1 -301776 sc-eQTL 6.57e-01 0.0779 0.175 0.05 Pro_T L2
ENSG00000188786 MTF1 -114575 sc-eQTL 9.07e-01 -0.0235 0.202 0.05 Pro_T L2
ENSG00000196449 YRDC -63191 sc-eQTL 4.09e-01 0.149 0.179 0.05 Pro_T L2
ENSG00000197982 C1orf122 -61962 sc-eQTL 5.61e-01 0.0963 0.165 0.05 Pro_T L2
ENSG00000204084 INPP5B -202040 sc-eQTL 7.28e-01 -0.0692 0.199 0.05 Pro_T L2
ENSG00000233621 LINC01137 270606 sc-eQTL 8.23e-01 -0.0411 0.183 0.05 Pro_T L2
ENSG00000116922 C1orf109 52768 sc-eQTL 4.99e-01 -0.155 0.229 0.061 gdT L2
ENSG00000134690 CDCA8 52536 sc-eQTL 8.17e-01 -0.0458 0.198 0.061 gdT L2
ENSG00000134697 GNL2 149080 sc-eQTL 8.08e-01 0.0591 0.242 0.061 gdT L2
ENSG00000163874 ZC3H12A 270437 sc-eQTL 9.32e-01 -0.0146 0.17 0.061 gdT L2
ENSG00000163875 MEAF6 230243 sc-eQTL 6.42e-01 -0.102 0.218 0.061 gdT L2
ENSG00000163877 SNIP1 190724 sc-eQTL 7.07e-01 0.0841 0.223 0.061 gdT L2
ENSG00000183386 FHL3 -260589 sc-eQTL 4.57e-01 -0.158 0.211 0.061 gdT L2
ENSG00000183431 SF3A3 -245058 sc-eQTL 7.88e-01 -0.0633 0.234 0.061 gdT L2
ENSG00000183520 UTP11 -264241 sc-eQTL 2.90e-01 -0.259 0.244 0.061 gdT L2
ENSG00000185090 MANEAL -48785 sc-eQTL 3.19e-01 0.194 0.194 0.061 gdT L2
ENSG00000185668 POU3F1 -301776 sc-eQTL 6.34e-01 0.0967 0.203 0.061 gdT L2
ENSG00000188786 MTF1 -114575 sc-eQTL 5.07e-01 0.156 0.234 0.061 gdT L2
ENSG00000196449 YRDC -63191 sc-eQTL 6.94e-01 0.0787 0.2 0.061 gdT L2
ENSG00000197982 C1orf122 -61962 sc-eQTL 1.72e-01 -0.283 0.206 0.061 gdT L2
ENSG00000204084 INPP5B -202040 sc-eQTL 9.59e-01 -0.0113 0.221 0.061 gdT L2
ENSG00000233621 LINC01137 270606 sc-eQTL 7.82e-01 -0.0569 0.205 0.061 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116922 C1orf109 52768 eQTL 0.0177 -0.128 0.0537 0.0 0.0 0.0378
ENSG00000183386 FHL3 -260589 eQTL 1.65e-12 -0.59 0.0824 0.0025 0.0 0.0378
ENSG00000183431 SF3A3 -245058 eQTL 8.99e-09 -0.448 0.0773 0.0 0.0 0.0378
ENSG00000183520 UTP11 -264241 eQTL 0.0043 -0.123 0.0431 0.0 0.0 0.0378
ENSG00000204084 INPP5B -202040 eQTL 2.06e-12 0.611 0.0857 0.0 0.0 0.0378
ENSG00000230955 AL929472.2 -115680 eQTL 6.28e-06 0.375 0.0825 0.0 0.0 0.0378
ENSG00000233621 LINC01137 270606 eQTL 1.57e-05 0.247 0.0569 0.00124 0.0 0.0378

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116922 C1orf109 52768 1.11e-05 1.25e-05 1.54e-06 6.84e-06 2.48e-06 5.06e-06 1.31e-05 2.18e-06 1.05e-05 5.52e-06 1.44e-05 6.31e-06 1.88e-05 4.19e-06 3.49e-06 6.64e-06 6.37e-06 9.3e-06 3.04e-06 2.77e-06 5.84e-06 1.06e-05 1.03e-05 3.29e-06 2.07e-05 4.12e-06 5.93e-06 4.06e-06 1.22e-05 9.8e-06 7.63e-06 1.01e-06 1.25e-06 3.24e-06 5.01e-06 2.86e-06 1.78e-06 1.95e-06 2.25e-06 9.75e-07 9.94e-07 1.53e-05 1.57e-06 1.47e-07 7.14e-07 1.78e-06 1.78e-06 7.83e-07 5.05e-07
ENSG00000183386 FHL3 -260589 1.28e-06 1.3e-06 3.58e-07 1.26e-06 3.5e-07 5.88e-07 1.48e-06 3.69e-07 1.4e-06 5.15e-07 2.01e-06 7.79e-07 2.46e-06 2.79e-07 5.51e-07 9.19e-07 9.23e-07 7.83e-07 8.21e-07 6.88e-07 6.17e-07 1.7e-06 8.95e-07 5.74e-07 2.42e-06 4.33e-07 9.35e-07 7.81e-07 1.31e-06 1.2e-06 8.17e-07 2.24e-07 2.29e-07 6.76e-07 5.21e-07 4.5e-07 6.17e-07 2.15e-07 4.52e-07 1.54e-07 2.77e-07 1.62e-06 1.68e-07 1.74e-07 1.69e-07 1.99e-07 2.45e-07 7.75e-08 9.32e-08
ENSG00000183431 SF3A3 -245058 1.4e-06 1.84e-06 3.08e-07 1.27e-06 3.75e-07 6.05e-07 1.46e-06 3.68e-07 1.7e-06 6.07e-07 2.07e-06 8.93e-07 2.66e-06 3.9e-07 5.4e-07 9.92e-07 1.03e-06 1.02e-06 7.98e-07 6.26e-07 7.49e-07 1.89e-06 1.12e-06 5.58e-07 2.33e-06 6.01e-07 1.02e-06 7.09e-07 1.45e-06 1.3e-06 8.43e-07 3.01e-07 2.15e-07 6.24e-07 5.15e-07 4.54e-07 7.15e-07 2.34e-07 4.84e-07 2.93e-07 2.79e-07 1.93e-06 3.34e-07 1.99e-07 2.22e-07 2.03e-07 2.35e-07 8.48e-08 9.51e-08
ENSG00000183520 UTP11 -264241 1.31e-06 1.4e-06 3.29e-07 1.26e-06 3.51e-07 5.32e-07 1.52e-06 3.41e-07 1.41e-06 4.82e-07 2.01e-06 7.48e-07 2.51e-06 2.95e-07 4.91e-07 9.13e-07 9.01e-07 7.21e-07 8.41e-07 6.86e-07 5.8e-07 1.6e-06 9.11e-07 6.31e-07 2.23e-06 4.11e-07 9.18e-07 7.26e-07 1.29e-06 1.2e-06 8e-07 2.08e-07 2.34e-07 6.74e-07 5.38e-07 4.62e-07 6.08e-07 1.92e-07 4.2e-07 1.17e-07 2.97e-07 1.64e-06 1.53e-07 1.74e-07 1.74e-07 1.85e-07 2.41e-07 8.37e-08 8.38e-08
ENSG00000204084 INPP5B -202040 2.48e-06 2.63e-06 2.85e-07 1.86e-06 4.39e-07 7.23e-07 1.48e-06 4.21e-07 1.68e-06 7.2e-07 2.11e-06 1.47e-06 3.47e-06 1.22e-06 3.41e-07 1.24e-06 1.04e-06 1.55e-06 5.66e-07 6.49e-07 6.39e-07 2.06e-06 1.87e-06 9.6e-07 3.45e-06 9.6e-07 1.15e-06 1.01e-06 1.63e-06 1.64e-06 1.45e-06 2.83e-07 3.19e-07 7.63e-07 9.18e-07 6.39e-07 6.6e-07 3.37e-07 6.91e-07 2.01e-07 2.58e-07 2.98e-06 4.81e-07 1.89e-07 3.58e-07 3.47e-07 3.02e-07 1.39e-07 1.83e-07
ENSG00000230955 AL929472.2 -115680 4.89e-06 5.79e-06 9.13e-07 3.45e-06 1.62e-06 1.64e-06 6.12e-06 9.79e-07 5e-06 2.48e-06 6.44e-06 3.32e-06 7.83e-06 1.65e-06 1.43e-06 3.83e-06 1.98e-06 3.75e-06 1.55e-06 1.04e-06 2.88e-06 4.91e-06 4.44e-06 1.39e-06 8.54e-06 1.76e-06 2.35e-06 1.84e-06 4.45e-06 4.61e-06 2.57e-06 4.91e-07 7.93e-07 1.6e-06 2.05e-06 9e-07 9.36e-07 4.42e-07 9.42e-07 3.8e-07 3.2e-07 7.2e-06 4.73e-07 1.55e-07 3.58e-07 1.03e-06 8.39e-07 2.72e-07 1.78e-07
ENSG00000233621 LINC01137 270606 1.27e-06 1.24e-06 3.25e-07 1.3e-06 3.46e-07 4.81e-07 1.59e-06 3.66e-07 1.49e-06 4.52e-07 1.84e-06 6.61e-07 2.34e-06 2.92e-07 4.35e-07 8.19e-07 9.26e-07 6.94e-07 7.73e-07 6.99e-07 4.86e-07 1.49e-06 8.61e-07 6.4e-07 2.31e-06 3.75e-07 8.99e-07 7.22e-07 1.25e-06 1.25e-06 7.8e-07 2.05e-07 1.95e-07 6.99e-07 5.85e-07 4.34e-07 5.58e-07 1.66e-07 3.74e-07 9.03e-08 2.32e-07 1.6e-06 1.37e-07 1.66e-07 2.01e-07 1.47e-07 1.97e-07 8.81e-08 8.09e-08