Genes within 1Mb (chr1:37709007:G:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 16758 sc-eQTL 1.47e-01 0.315 0.216 0.07 PB L2
ENSG00000134697 GNL2 113070 sc-eQTL 4.07e-01 -0.168 0.201 0.07 PB L2
ENSG00000163874 ZC3H12A 234427 sc-eQTL 3.47e-02 0.39 0.183 0.07 PB L2
ENSG00000163875 MEAF6 194233 sc-eQTL 2.60e-02 0.435 0.193 0.07 PB L2
ENSG00000163877 SNIP1 154714 sc-eQTL 3.26e-01 -0.199 0.201 0.07 PB L2
ENSG00000183431 SF3A3 -281068 sc-eQTL 4.00e-01 -0.16 0.19 0.07 PB L2
ENSG00000183520 UTP11 -300251 sc-eQTL 5.84e-02 -0.263 0.137 0.07 PB L2
ENSG00000185090 MANEAL -84795 sc-eQTL 5.72e-02 -0.401 0.208 0.07 PB L2
ENSG00000185668 POU3F1 -337786 sc-eQTL 8.53e-01 0.0375 0.202 0.07 PB L2
ENSG00000188786 MTF1 -150585 sc-eQTL 7.43e-01 0.0706 0.215 0.07 PB L2
ENSG00000196449 YRDC -99201 sc-eQTL 8.83e-01 0.0331 0.224 0.07 PB L2
ENSG00000197982 C1orf122 -97972 sc-eQTL 6.63e-01 -0.0622 0.142 0.07 PB L2
ENSG00000204084 INPP5B -238050 sc-eQTL 1.31e-01 0.341 0.224 0.07 PB L2
ENSG00000238063 LINC01685 -765818 sc-eQTL 9.70e-01 -0.00755 0.201 0.07 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116922 C1orf109 16758 eQTL 0.0171 0.139 0.0581 0.0 0.0 0.0324
ENSG00000163875 MEAF6 194233 eQTL 0.00489 0.122 0.0431 0.0 0.0 0.0324
ENSG00000196449 YRDC -99201 eQTL 0.0469 0.104 0.0523 0.0 0.0 0.0324


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116922 C1orf109 16758 4.42e-05 3.82e-05 8.72e-06 1.97e-05 9.25e-06 2.24e-05 6.15e-05 9.33e-06 5.4e-05 2.85e-05 5.89e-05 2.92e-05 6.54e-05 1.78e-05 1.03e-05 3.48e-05 2.43e-05 4.08e-05 1.22e-05 1.07e-05 2.88e-05 5.12e-05 4.5e-05 1.26e-05 6.88e-05 1.57e-05 2.52e-05 2.22e-05 4.84e-05 3.09e-05 3.45e-05 3.87e-06 6.83e-06 9.22e-06 1.66e-05 8.63e-06 6.25e-06 6.43e-06 7.25e-06 4.51e-06 2.6e-06 4.87e-05 4.97e-06 5.93e-07 4.94e-06 6.61e-06 8.33e-06 4.12e-06 3.37e-06
ENSG00000196449 YRDC -99201 5.97e-06 9.04e-06 1.43e-06 4.79e-06 2.08e-06 3.88e-06 9.63e-06 2.12e-06 8.98e-06 4.74e-06 9.04e-06 5.14e-06 1.12e-05 3.87e-06 1.69e-06 6.43e-06 3.91e-06 6.71e-06 2.61e-06 2.85e-06 6.79e-06 8.15e-06 6.78e-06 2.28e-06 1.27e-05 3.9e-06 4.88e-06 3.97e-06 8.33e-06 6.39e-06 4.92e-06 9.82e-07 1.3e-06 2.7e-06 4.3e-06 2.21e-06 1.7e-06 2.13e-06 2.16e-06 9.84e-07 1.58e-06 9.16e-06 2.35e-06 2.52e-07 7.56e-07 1.44e-06 1.94e-06 8.57e-07 5.67e-07