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Genes within 1Mb (chr1:37631758:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116922 C1orf109 -60491 sc-eQTL 3.22e-02 0.391 0.181 0.051 B_Activated L2
ENSG00000134697 GNL2 35821 sc-eQTL 1.30e-01 0.36 0.237 0.051 B_Activated L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 7.95e-01 -0.0515 0.198 0.051 B_Activated L2
ENSG00000163875 MEAF6 116984 sc-eQTL 1.84e-01 0.276 0.207 0.051 B_Activated L2
ENSG00000163877 SNIP1 77465 sc-eQTL 6.84e-01 -0.0861 0.211 0.051 B_Activated L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 1.28e-01 0.334 0.218 0.051 B_Activated L2
ENSG00000183520 UTP11 -377500 sc-eQTL 3.65e-02 -0.416 0.198 0.051 B_Activated L2
ENSG00000185090 MANEAL -162044 sc-eQTL 1.72e-02 0.429 0.178 0.051 B_Activated L2
ENSG00000185668 POU3F1 -415035 sc-eQTL 1.05e-02 0.457 0.176 0.051 B_Activated L2
ENSG00000188786 MTF1 -227834 sc-eQTL 9.67e-01 -0.00952 0.227 0.051 B_Activated L2
ENSG00000196449 YRDC -176450 sc-eQTL 5.54e-01 -0.123 0.208 0.051 B_Activated L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 9.45e-01 -0.0149 0.217 0.051 B_Activated L2
ENSG00000204084 INPP5B -315299 sc-eQTL 2.28e-01 0.267 0.22 0.051 B_Activated L2
ENSG00000238063 LINC01685 -843067 sc-eQTL 6.60e-01 0.0616 0.14 0.051 B_Activated L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 9.40e-01 0.0149 0.2 0.053 CD8_TCM L2
ENSG00000134697 GNL2 35821 sc-eQTL 2.38e-01 -0.237 0.2 0.053 CD8_TCM L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 4.49e-02 -0.34 0.168 0.053 CD8_TCM L2
ENSG00000163875 MEAF6 116984 sc-eQTL 2.67e-01 0.2 0.18 0.053 CD8_TCM L2
ENSG00000163877 SNIP1 77465 sc-eQTL 5.27e-01 0.112 0.176 0.053 CD8_TCM L2
ENSG00000183386 FHL3 -373848 sc-eQTL 4.51e-02 0.4 0.199 0.053 CD8_TCM L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 4.77e-01 0.129 0.181 0.053 CD8_TCM L2
ENSG00000183520 UTP11 -377500 sc-eQTL 5.18e-01 -0.132 0.205 0.053 CD8_TCM L2
ENSG00000185090 MANEAL -162044 sc-eQTL 9.59e-01 -0.00853 0.167 0.053 CD8_TCM L2
ENSG00000185668 POU3F1 -415035 sc-eQTL 6.41e-02 0.342 0.184 0.053 CD8_TCM L2
ENSG00000188786 MTF1 -227834 sc-eQTL 9.57e-01 -0.0114 0.213 0.053 CD8_TCM L2
ENSG00000196449 YRDC -176450 sc-eQTL 7.41e-01 -0.0586 0.177 0.053 CD8_TCM L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 8.12e-01 -0.0452 0.19 0.053 CD8_TCM L2
ENSG00000204084 INPP5B -315299 sc-eQTL 5.84e-02 0.343 0.18 0.053 CD8_TCM L2
ENSG00000233621 LINC01137 157347 sc-eQTL 6.32e-01 0.0942 0.197 0.053 CD8_TCM L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 6.64e-01 -0.078 0.179 0.053 CD8_TEM L2
ENSG00000134697 GNL2 35821 sc-eQTL 5.41e-01 0.122 0.199 0.053 CD8_TEM L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 8.50e-01 0.0283 0.149 0.053 CD8_TEM L2
ENSG00000163875 MEAF6 116984 sc-eQTL 7.60e-01 -0.0509 0.166 0.053 CD8_TEM L2
ENSG00000163877 SNIP1 77465 sc-eQTL 3.22e-02 -0.389 0.18 0.053 CD8_TEM L2
ENSG00000183386 FHL3 -373848 sc-eQTL 7.41e-02 0.352 0.196 0.053 CD8_TEM L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 9.02e-01 0.0254 0.205 0.053 CD8_TEM L2
ENSG00000183520 UTP11 -377500 sc-eQTL 7.22e-01 0.0697 0.195 0.053 CD8_TEM L2
ENSG00000185090 MANEAL -162044 sc-eQTL 1.23e-01 -0.282 0.182 0.053 CD8_TEM L2
ENSG00000185668 POU3F1 -415035 sc-eQTL 1.84e-01 -0.237 0.178 0.053 CD8_TEM L2
ENSG00000188786 MTF1 -227834 sc-eQTL 3.13e-01 -0.2 0.197 0.053 CD8_TEM L2
ENSG00000196449 YRDC -176450 sc-eQTL 6.54e-01 -0.0859 0.191 0.053 CD8_TEM L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 9.81e-01 -0.00459 0.189 0.053 CD8_TEM L2
ENSG00000204084 INPP5B -315299 sc-eQTL 4.77e-02 0.383 0.192 0.053 CD8_TEM L2
ENSG00000233621 LINC01137 157347 sc-eQTL 5.62e-01 0.108 0.187 0.053 CD8_TEM L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 8.30e-01 0.0424 0.197 0.05 Pro_T L2
ENSG00000134690 CDCA8 -60723 sc-eQTL 7.60e-02 -0.21 0.118 0.05 Pro_T L2
ENSG00000134697 GNL2 35821 sc-eQTL 7.16e-01 -0.0581 0.159 0.05 Pro_T L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 8.24e-01 0.0322 0.145 0.05 Pro_T L2
ENSG00000163875 MEAF6 116984 sc-eQTL 5.80e-01 -0.086 0.155 0.05 Pro_T L2
ENSG00000163877 SNIP1 77465 sc-eQTL 5.39e-01 -0.113 0.184 0.05 Pro_T L2
ENSG00000183386 FHL3 -373848 sc-eQTL 5.20e-01 0.0978 0.152 0.05 Pro_T L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 7.59e-01 -0.0523 0.17 0.05 Pro_T L2
ENSG00000183520 UTP11 -377500 sc-eQTL 5.77e-01 0.0815 0.146 0.05 Pro_T L2
ENSG00000185090 MANEAL -162044 sc-eQTL 5.46e-01 -0.105 0.173 0.05 Pro_T L2
ENSG00000185668 POU3F1 -415035 sc-eQTL 3.21e-01 0.172 0.172 0.05 Pro_T L2
ENSG00000188786 MTF1 -227834 sc-eQTL 4.11e-02 0.405 0.197 0.05 Pro_T L2
ENSG00000196449 YRDC -176450 sc-eQTL 8.92e-01 0.0241 0.177 0.05 Pro_T L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 8.71e-01 -0.0264 0.163 0.05 Pro_T L2
ENSG00000204084 INPP5B -315299 sc-eQTL 5.45e-01 -0.118 0.196 0.05 Pro_T L2
ENSG00000233621 LINC01137 157347 sc-eQTL 5.35e-01 0.112 0.18 0.05 Pro_T L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 6.69e-01 0.0752 0.176 0.051 cDC L2
ENSG00000134697 GNL2 35821 sc-eQTL 7.88e-01 0.0496 0.184 0.051 cDC L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 3.54e-01 -0.145 0.156 0.051 cDC L2
ENSG00000163875 MEAF6 116984 sc-eQTL 2.63e-01 0.201 0.179 0.051 cDC L2
ENSG00000163877 SNIP1 77465 sc-eQTL 6.99e-02 -0.354 0.194 0.051 cDC L2
ENSG00000183386 FHL3 -373848 sc-eQTL 2.39e-01 0.228 0.194 0.051 cDC L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 1.13e-01 -0.299 0.188 0.051 cDC L2
ENSG00000183520 UTP11 -377500 sc-eQTL 2.81e-01 -0.225 0.208 0.051 cDC L2
ENSG00000188786 MTF1 -227834 sc-eQTL 4.11e-01 -0.164 0.2 0.051 cDC L2
ENSG00000196449 YRDC -176450 sc-eQTL 6.13e-01 0.0965 0.19 0.051 cDC L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 6.98e-01 -0.067 0.172 0.051 cDC L2
ENSG00000204084 INPP5B -315299 sc-eQTL 7.20e-01 -0.0711 0.198 0.051 cDC L2
ENSG00000233621 LINC01137 157347 sc-eQTL 8.12e-01 -0.0432 0.181 0.051 cDC L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 2.98e-01 0.191 0.183 0.051 intMono L2
ENSG00000134697 GNL2 35821 sc-eQTL 1.96e-01 0.264 0.203 0.051 intMono L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 9.78e-01 0.00448 0.166 0.051 intMono L2
ENSG00000163875 MEAF6 116984 sc-eQTL 5.60e-01 0.118 0.202 0.051 intMono L2
ENSG00000163877 SNIP1 77465 sc-eQTL 4.40e-01 -0.15 0.194 0.051 intMono L2
ENSG00000183386 FHL3 -373848 sc-eQTL 2.37e-01 -0.227 0.191 0.051 intMono L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 1.75e-01 -0.268 0.197 0.051 intMono L2
ENSG00000183520 UTP11 -377500 sc-eQTL 3.92e-01 0.158 0.184 0.051 intMono L2
ENSG00000188786 MTF1 -227834 sc-eQTL 8.71e-01 0.0327 0.201 0.051 intMono L2
ENSG00000196449 YRDC -176450 sc-eQTL 2.02e-02 0.444 0.19 0.051 intMono L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 8.16e-01 0.0405 0.174 0.051 intMono L2
ENSG00000204084 INPP5B -315299 sc-eQTL 8.59e-01 -0.035 0.197 0.051 intMono L2
ENSG00000233621 LINC01137 157347 sc-eQTL 8.57e-02 -0.31 0.18 0.051 intMono L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 8.87e-01 0.0259 0.182 0.052 ncMono L2
ENSG00000134697 GNL2 35821 sc-eQTL 6.87e-01 0.0725 0.18 0.052 ncMono L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 3.20e-01 -0.164 0.165 0.052 ncMono L2
ENSG00000163875 MEAF6 116984 sc-eQTL 5.03e-01 -0.122 0.182 0.052 ncMono L2
ENSG00000163877 SNIP1 77465 sc-eQTL 5.37e-01 -0.119 0.192 0.052 ncMono L2
ENSG00000183386 FHL3 -373848 sc-eQTL 9.21e-01 0.0198 0.2 0.052 ncMono L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 3.22e-01 -0.191 0.192 0.052 ncMono L2
ENSG00000183520 UTP11 -377500 sc-eQTL 9.18e-02 -0.328 0.194 0.052 ncMono L2
ENSG00000188786 MTF1 -227834 sc-eQTL 6.27e-01 -0.0825 0.169 0.052 ncMono L2
ENSG00000196449 YRDC -176450 sc-eQTL 4.37e-01 0.131 0.168 0.052 ncMono L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 3.69e-02 -0.348 0.165 0.052 ncMono L2
ENSG00000204084 INPP5B -315299 sc-eQTL 5.37e-01 -0.116 0.188 0.052 ncMono L2
ENSG00000233621 LINC01137 157347 sc-eQTL 9.67e-01 0.00732 0.177 0.052 ncMono L2
ENSG00000116922 C1orf109 -60491 sc-eQTL 5.75e-01 -0.0996 0.177 0.059 pDC L2
ENSG00000134697 GNL2 35821 sc-eQTL 2.88e-01 0.209 0.196 0.059 pDC L2
ENSG00000163874 ZC3H12A 157178 sc-eQTL 7.82e-01 -0.0558 0.201 0.059 pDC L2
ENSG00000163875 MEAF6 116984 sc-eQTL 2.08e-01 -0.246 0.195 0.059 pDC L2
ENSG00000163877 SNIP1 77465 sc-eQTL 1.77e-01 -0.294 0.217 0.059 pDC L2
ENSG00000183386 FHL3 -373848 sc-eQTL 4.15e-01 -0.129 0.158 0.059 pDC L2
ENSG00000183431 SF3A3 -358317 sc-eQTL 9.83e-01 0.00444 0.202 0.059 pDC L2
ENSG00000183520 UTP11 -377500 sc-eQTL 5.79e-01 -0.121 0.217 0.059 pDC L2
ENSG00000188786 MTF1 -227834 sc-eQTL 9.31e-01 -0.0168 0.193 0.059 pDC L2
ENSG00000196449 YRDC -176450 sc-eQTL 5.78e-01 -0.101 0.181 0.059 pDC L2
ENSG00000197982 C1orf122 -175221 sc-eQTL 5.79e-01 -0.11 0.198 0.059 pDC L2
ENSG00000204084 INPP5B -315299 sc-eQTL 4.74e-01 -0.136 0.189 0.059 pDC L2
ENSG00000233621 LINC01137 157347 sc-eQTL 3.24e-01 -0.16 0.162 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134697 GNL2 35821 eQTL 3.98e-07 0.211 0.0413 0.0 0.0 0.0505
ENSG00000196449 YRDC -176450 eQTL 0.0539 -0.0779 0.0404 0.00115 0.0 0.0505
ENSG00000232273 FTH1P1 86995 eQTL 7.74e-05 0.209 0.0527 0.0158 0.0118 0.0505

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134697 GNL2 35821 4.35e-05 3.7e-05 6.45e-06 1.6e-05 6.21e-06 1.64e-05 4.92e-05 4.92e-06 3.6e-05 1.66e-05 4.41e-05 1.95e-05 5.48e-05 1.6e-05 7.62e-06 2.2e-05 1.98e-05 2.71e-05 8.79e-06 7.31e-06 1.69e-05 3.78e-05 3.52e-05 9.89e-06 5.03e-05 8.39e-06 1.62e-05 1.49e-05 3.57e-05 2.64e-05 2.34e-05 1.68e-06 2.95e-06 7.83e-06 1.23e-05 6.12e-06 3.22e-06 3.17e-06 5.3e-06 3.57e-06 1.66e-06 4.33e-05 3.99e-06 3.55e-07 2.7e-06 4.43e-06 4.33e-06 1.69e-06 1.54e-06
ENSG00000163877 \N 77465 3.32e-05 3.3e-05 5.92e-06 1.55e-05 5.29e-06 1.38e-05 4.36e-05 4.24e-06 2.93e-05 1.45e-05 3.73e-05 1.58e-05 4.89e-05 1.35e-05 6.73e-06 1.79e-05 1.61e-05 2.32e-05 7.63e-06 6.38e-06 1.39e-05 3.06e-05 3.03e-05 8.48e-06 4.24e-05 7.03e-06 1.35e-05 1.24e-05 3.15e-05 2.45e-05 1.95e-05 1.64e-06 2.45e-06 6.84e-06 1.1e-05 5.61e-06 2.83e-06 3.18e-06 4.46e-06 3.24e-06 1.64e-06 3.78e-05 3.07e-06 3.57e-07 2.16e-06 3.75e-06 3.97e-06 1.46e-06 1.53e-06
ENSG00000183520 \N -377500 1.04e-05 1.25e-05 3.18e-06 7.65e-06 2.45e-06 5.65e-06 1.2e-05 1.93e-06 1.32e-05 6.72e-06 1.38e-05 6.22e-06 2.55e-05 4.48e-06 4.76e-06 9.44e-06 5.49e-06 1.12e-05 4.55e-06 3.14e-06 6.48e-06 1.14e-05 1.01e-05 3.47e-06 1.9e-05 4.49e-06 7.48e-06 5.39e-06 1.29e-05 1.02e-05 7.69e-06 1.06e-06 1.17e-06 3.78e-06 4.88e-06 2.67e-06 1.83e-06 2.02e-06 2.26e-06 1.42e-06 6.6e-07 1.37e-05 1.64e-06 2.64e-07 7.66e-07 2.02e-06 1.87e-06 8.43e-07 4.32e-07
ENSG00000196449 YRDC -176450 2.31e-05 2.83e-05 4.95e-06 1.38e-05 3.32e-06 1.1e-05 3.41e-05 3.71e-06 2.39e-05 1.2e-05 3.02e-05 1.07e-05 4.34e-05 1.07e-05 5.97e-06 1.48e-05 1.3e-05 1.89e-05 6.96e-06 5.19e-06 1.05e-05 2.44e-05 2.41e-05 6.97e-06 3.46e-05 5.73e-06 1.09e-05 9.99e-06 2.59e-05 2.03e-05 1.51e-05 1.61e-06 2e-06 5.98e-06 9.03e-06 4.59e-06 2.31e-06 2.83e-06 3.71e-06 2.88e-06 1.2e-06 3.1e-05 2.64e-06 2.96e-07 1.93e-06 2.97e-06 3.36e-06 1.31e-06 1.32e-06
ENSG00000232273 FTH1P1 86995 3.22e-05 3.29e-05 5.75e-06 1.54e-05 5.1e-06 1.37e-05 4.26e-05 4.18e-06 2.88e-05 1.44e-05 3.66e-05 1.52e-05 4.85e-05 1.3e-05 6.68e-06 1.75e-05 1.56e-05 2.26e-05 7.62e-06 6.05e-06 1.35e-05 2.99e-05 2.96e-05 8.53e-06 4.15e-05 6.84e-06 1.32e-05 1.21e-05 3.11e-05 2.4e-05 1.87e-05 1.61e-06 2.37e-06 6.8e-06 1.06e-05 5.52e-06 2.78e-06 3.13e-06 4.3e-06 3.2e-06 1.63e-06 3.71e-05 2.95e-06 3.57e-07 2.07e-06 3.66e-06 3.88e-06 1.48e-06 1.56e-06