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Genes within 1Mb (chr1:37426949:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116898 MRPS15 962565 sc-eQTL 9.53e-01 0.0124 0.213 0.05 CD4_CTL L2
ENSG00000116922 C1orf109 -265300 sc-eQTL 6.86e-01 -0.0825 0.204 0.05 CD4_CTL L2
ENSG00000134697 GNL2 -168988 sc-eQTL 2.40e-01 0.24 0.203 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A -47631 sc-eQTL 2.31e-01 -0.221 0.184 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 -87825 sc-eQTL 8.41e-01 0.0412 0.205 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 -127344 sc-eQTL 6.13e-01 -0.101 0.199 0.05 CD4_CTL L2
ENSG00000183386 FHL3 -578657 sc-eQTL 9.46e-01 -0.013 0.19 0.05 CD4_CTL L2
ENSG00000183431 SF3A3 -563126 sc-eQTL 3.73e-01 0.174 0.195 0.05 CD4_CTL L2
ENSG00000183520 UTP11 -582309 sc-eQTL 2.13e-01 0.243 0.194 0.05 CD4_CTL L2
ENSG00000188786 MTF1 -432643 sc-eQTL 8.69e-01 0.0344 0.208 0.05 CD4_CTL L2
ENSG00000196449 YRDC -381259 sc-eQTL 2.43e-01 -0.231 0.197 0.05 CD4_CTL L2
ENSG00000197982 C1orf122 -380030 sc-eQTL 7.62e-01 -0.0596 0.196 0.05 CD4_CTL L2
ENSG00000204084 INPP5B -520108 sc-eQTL 9.51e-02 -0.345 0.206 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 -47462 sc-eQTL 1.49e-01 -0.276 0.191 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 962565 sc-eQTL 3.79e-01 0.17 0.193 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 -265300 sc-eQTL 2.77e-01 0.204 0.187 0.05 CD8_TEM L2
ENSG00000134697 GNL2 -168988 sc-eQTL 3.30e-01 -0.203 0.208 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A -47631 sc-eQTL 5.07e-01 0.104 0.156 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 -87825 sc-eQTL 7.60e-01 -0.0531 0.174 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 -127344 sc-eQTL 5.34e-01 0.119 0.191 0.05 CD8_TEM L2
ENSG00000183386 FHL3 -578657 sc-eQTL 9.36e-01 0.0167 0.206 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 -563126 sc-eQTL 8.92e-01 -0.0293 0.215 0.05 CD8_TEM L2
ENSG00000183520 UTP11 -582309 sc-eQTL 9.80e-01 0.00524 0.204 0.05 CD8_TEM L2
ENSG00000185090 MANEAL -366853 sc-eQTL 7.24e-01 -0.0678 0.192 0.05 CD8_TEM L2
ENSG00000185668 POU3F1 -619844 sc-eQTL 9.03e-02 -0.316 0.186 0.05 CD8_TEM L2
ENSG00000188786 MTF1 -432643 sc-eQTL 2.78e-01 -0.224 0.206 0.05 CD8_TEM L2
ENSG00000196449 YRDC -381259 sc-eQTL 4.35e-01 -0.156 0.2 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 -380030 sc-eQTL 5.11e-02 0.384 0.196 0.05 CD8_TEM L2
ENSG00000204084 INPP5B -520108 sc-eQTL 7.62e-01 -0.0616 0.203 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 -47462 sc-eQTL 3.75e-01 0.173 0.195 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 962565 sc-eQTL 8.29e-01 -0.0496 0.229 0.05 NK_HLA L2
ENSG00000116922 C1orf109 -265300 sc-eQTL 2.24e-01 -0.262 0.215 0.05 NK_HLA L2
ENSG00000134697 GNL2 -168988 sc-eQTL 5.02e-01 -0.148 0.22 0.05 NK_HLA L2
ENSG00000163874 ZC3H12A -47631 sc-eQTL 3.61e-01 0.15 0.164 0.05 NK_HLA L2
ENSG00000163875 MEAF6 -87825 sc-eQTL 9.94e-01 0.00146 0.194 0.05 NK_HLA L2
ENSG00000163877 SNIP1 -127344 sc-eQTL 4.81e-01 -0.148 0.21 0.05 NK_HLA L2
ENSG00000183386 FHL3 -578657 sc-eQTL 1.81e-01 0.215 0.16 0.05 NK_HLA L2
ENSG00000183431 SF3A3 -563126 sc-eQTL 3.16e-01 -0.22 0.218 0.05 NK_HLA L2
ENSG00000183520 UTP11 -582309 sc-eQTL 7.14e-02 0.396 0.219 0.05 NK_HLA L2
ENSG00000185090 MANEAL -366853 sc-eQTL 9.70e-02 -0.323 0.193 0.05 NK_HLA L2
ENSG00000188786 MTF1 -432643 sc-eQTL 9.94e-01 0.00166 0.216 0.05 NK_HLA L2
ENSG00000196449 YRDC -381259 sc-eQTL 3.45e-01 -0.182 0.193 0.05 NK_HLA L2
ENSG00000197982 C1orf122 -380030 sc-eQTL 6.97e-01 0.0804 0.206 0.05 NK_HLA L2
ENSG00000204084 INPP5B -520108 sc-eQTL 5.00e-01 0.144 0.213 0.05 NK_HLA L2
ENSG00000233621 LINC01137 -47462 sc-eQTL 8.62e-01 0.0373 0.214 0.05 NK_HLA L2
ENSG00000116898 MRPS15 962565 sc-eQTL 6.48e-01 0.115 0.252 0.052 gdT L2
ENSG00000116922 C1orf109 -265300 sc-eQTL 4.92e-01 -0.171 0.249 0.052 gdT L2
ENSG00000134690 CDCA8 -265532 sc-eQTL 6.88e-01 0.0863 0.215 0.052 gdT L2
ENSG00000134697 GNL2 -168988 sc-eQTL 5.61e-01 0.153 0.262 0.052 gdT L2
ENSG00000163874 ZC3H12A -47631 sc-eQTL 7.75e-01 0.0528 0.185 0.052 gdT L2
ENSG00000163875 MEAF6 -87825 sc-eQTL 4.17e-01 0.192 0.236 0.052 gdT L2
ENSG00000163877 SNIP1 -127344 sc-eQTL 8.59e-01 0.043 0.242 0.052 gdT L2
ENSG00000183386 FHL3 -578657 sc-eQTL 2.64e-01 0.256 0.229 0.052 gdT L2
ENSG00000183431 SF3A3 -563126 sc-eQTL 7.10e-01 -0.0946 0.254 0.052 gdT L2
ENSG00000183520 UTP11 -582309 sc-eQTL 5.69e-01 -0.151 0.265 0.052 gdT L2
ENSG00000185090 MANEAL -366853 sc-eQTL 4.04e-01 -0.177 0.211 0.052 gdT L2
ENSG00000185668 POU3F1 -619844 sc-eQTL 8.85e-01 -0.0318 0.22 0.052 gdT L2
ENSG00000188786 MTF1 -432643 sc-eQTL 3.57e-01 0.234 0.253 0.052 gdT L2
ENSG00000196449 YRDC -381259 sc-eQTL 5.19e-02 0.419 0.214 0.052 gdT L2
ENSG00000197982 C1orf122 -380030 sc-eQTL 1.77e-01 0.303 0.223 0.052 gdT L2
ENSG00000204084 INPP5B -520108 sc-eQTL 7.06e-01 -0.0905 0.239 0.052 gdT L2
ENSG00000233621 LINC01137 -47462 sc-eQTL 9.45e-01 0.0155 0.222 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163877 SNIP1 -127344 eQTL 0.047 -0.0815 0.041 0.0 0.0 0.0388
ENSG00000185090 MANEAL -366853 eQTL 0.0284 0.12 0.0545 0.00161 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina