logo

Genes within 1Mb (chr1:37426035:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116898 MRPS15 961651 sc-eQTL 9.53e-01 0.0124 0.213 0.05 CD4_CTL L2
ENSG00000116922 C1orf109 -266214 sc-eQTL 6.86e-01 -0.0825 0.204 0.05 CD4_CTL L2
ENSG00000134697 GNL2 -169902 sc-eQTL 2.40e-01 0.24 0.203 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A -48545 sc-eQTL 2.31e-01 -0.221 0.184 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 -88739 sc-eQTL 8.41e-01 0.0412 0.205 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 -128258 sc-eQTL 6.13e-01 -0.101 0.199 0.05 CD4_CTL L2
ENSG00000183386 FHL3 -579571 sc-eQTL 9.46e-01 -0.013 0.19 0.05 CD4_CTL L2
ENSG00000183431 SF3A3 -564040 sc-eQTL 3.73e-01 0.174 0.195 0.05 CD4_CTL L2
ENSG00000183520 UTP11 -583223 sc-eQTL 2.13e-01 0.243 0.194 0.05 CD4_CTL L2
ENSG00000188786 MTF1 -433557 sc-eQTL 8.69e-01 0.0344 0.208 0.05 CD4_CTL L2
ENSG00000196449 YRDC -382173 sc-eQTL 2.43e-01 -0.231 0.197 0.05 CD4_CTL L2
ENSG00000197982 C1orf122 -380944 sc-eQTL 7.62e-01 -0.0596 0.196 0.05 CD4_CTL L2
ENSG00000204084 INPP5B -521022 sc-eQTL 9.51e-02 -0.345 0.206 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 -48376 sc-eQTL 1.49e-01 -0.276 0.191 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 961651 sc-eQTL 3.79e-01 0.17 0.193 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 -266214 sc-eQTL 2.77e-01 0.204 0.187 0.05 CD8_TEM L2
ENSG00000134697 GNL2 -169902 sc-eQTL 3.30e-01 -0.203 0.208 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A -48545 sc-eQTL 5.07e-01 0.104 0.156 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 -88739 sc-eQTL 7.60e-01 -0.0531 0.174 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 -128258 sc-eQTL 5.34e-01 0.119 0.191 0.05 CD8_TEM L2
ENSG00000183386 FHL3 -579571 sc-eQTL 9.36e-01 0.0167 0.206 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 -564040 sc-eQTL 8.92e-01 -0.0293 0.215 0.05 CD8_TEM L2
ENSG00000183520 UTP11 -583223 sc-eQTL 9.80e-01 0.00524 0.204 0.05 CD8_TEM L2
ENSG00000185090 MANEAL -367767 sc-eQTL 7.24e-01 -0.0678 0.192 0.05 CD8_TEM L2
ENSG00000185668 POU3F1 -620758 sc-eQTL 9.03e-02 -0.316 0.186 0.05 CD8_TEM L2
ENSG00000188786 MTF1 -433557 sc-eQTL 2.78e-01 -0.224 0.206 0.05 CD8_TEM L2
ENSG00000196449 YRDC -382173 sc-eQTL 4.35e-01 -0.156 0.2 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 -380944 sc-eQTL 5.11e-02 0.384 0.196 0.05 CD8_TEM L2
ENSG00000204084 INPP5B -521022 sc-eQTL 7.62e-01 -0.0616 0.203 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 -48376 sc-eQTL 3.75e-01 0.173 0.195 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 961651 sc-eQTL 8.29e-01 -0.0496 0.229 0.05 NK_HLA L2
ENSG00000116922 C1orf109 -266214 sc-eQTL 2.24e-01 -0.262 0.215 0.05 NK_HLA L2
ENSG00000134697 GNL2 -169902 sc-eQTL 5.02e-01 -0.148 0.22 0.05 NK_HLA L2
ENSG00000163874 ZC3H12A -48545 sc-eQTL 3.61e-01 0.15 0.164 0.05 NK_HLA L2
ENSG00000163875 MEAF6 -88739 sc-eQTL 9.94e-01 0.00146 0.194 0.05 NK_HLA L2
ENSG00000163877 SNIP1 -128258 sc-eQTL 4.81e-01 -0.148 0.21 0.05 NK_HLA L2
ENSG00000183386 FHL3 -579571 sc-eQTL 1.81e-01 0.215 0.16 0.05 NK_HLA L2
ENSG00000183431 SF3A3 -564040 sc-eQTL 3.16e-01 -0.22 0.218 0.05 NK_HLA L2
ENSG00000183520 UTP11 -583223 sc-eQTL 7.14e-02 0.396 0.219 0.05 NK_HLA L2
ENSG00000185090 MANEAL -367767 sc-eQTL 9.70e-02 -0.323 0.193 0.05 NK_HLA L2
ENSG00000188786 MTF1 -433557 sc-eQTL 9.94e-01 0.00166 0.216 0.05 NK_HLA L2
ENSG00000196449 YRDC -382173 sc-eQTL 3.45e-01 -0.182 0.193 0.05 NK_HLA L2
ENSG00000197982 C1orf122 -380944 sc-eQTL 6.97e-01 0.0804 0.206 0.05 NK_HLA L2
ENSG00000204084 INPP5B -521022 sc-eQTL 5.00e-01 0.144 0.213 0.05 NK_HLA L2
ENSG00000233621 LINC01137 -48376 sc-eQTL 8.62e-01 0.0373 0.214 0.05 NK_HLA L2
ENSG00000116898 MRPS15 961651 sc-eQTL 6.48e-01 0.115 0.252 0.052 gdT L2
ENSG00000116922 C1orf109 -266214 sc-eQTL 4.92e-01 -0.171 0.249 0.052 gdT L2
ENSG00000134690 CDCA8 -266446 sc-eQTL 6.88e-01 0.0863 0.215 0.052 gdT L2
ENSG00000134697 GNL2 -169902 sc-eQTL 5.61e-01 0.153 0.262 0.052 gdT L2
ENSG00000163874 ZC3H12A -48545 sc-eQTL 7.75e-01 0.0528 0.185 0.052 gdT L2
ENSG00000163875 MEAF6 -88739 sc-eQTL 4.17e-01 0.192 0.236 0.052 gdT L2
ENSG00000163877 SNIP1 -128258 sc-eQTL 8.59e-01 0.043 0.242 0.052 gdT L2
ENSG00000183386 FHL3 -579571 sc-eQTL 2.64e-01 0.256 0.229 0.052 gdT L2
ENSG00000183431 SF3A3 -564040 sc-eQTL 7.10e-01 -0.0946 0.254 0.052 gdT L2
ENSG00000183520 UTP11 -583223 sc-eQTL 5.69e-01 -0.151 0.265 0.052 gdT L2
ENSG00000185090 MANEAL -367767 sc-eQTL 4.04e-01 -0.177 0.211 0.052 gdT L2
ENSG00000185668 POU3F1 -620758 sc-eQTL 8.85e-01 -0.0318 0.22 0.052 gdT L2
ENSG00000188786 MTF1 -433557 sc-eQTL 3.57e-01 0.234 0.253 0.052 gdT L2
ENSG00000196449 YRDC -382173 sc-eQTL 5.19e-02 0.419 0.214 0.052 gdT L2
ENSG00000197982 C1orf122 -380944 sc-eQTL 1.77e-01 0.303 0.223 0.052 gdT L2
ENSG00000204084 INPP5B -521022 sc-eQTL 7.06e-01 -0.0905 0.239 0.052 gdT L2
ENSG00000233621 LINC01137 -48376 sc-eQTL 9.45e-01 0.0155 0.222 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163877 SNIP1 -128258 eQTL 0.0484 -0.0809 0.0409 0.0 0.0 0.0388
ENSG00000185090 MANEAL -367767 eQTL 0.0289 0.119 0.0545 0.00159 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina