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Genes within 1Mb (chr1:37405158:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116898 MRPS15 940774 sc-eQTL 9.53e-01 0.0124 0.213 0.05 CD4_CTL L2
ENSG00000116922 C1orf109 -287091 sc-eQTL 6.86e-01 -0.0825 0.204 0.05 CD4_CTL L2
ENSG00000134697 GNL2 -190779 sc-eQTL 2.40e-01 0.24 0.203 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A -69422 sc-eQTL 2.31e-01 -0.221 0.184 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 -109616 sc-eQTL 8.41e-01 0.0412 0.205 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 -149135 sc-eQTL 6.13e-01 -0.101 0.199 0.05 CD4_CTL L2
ENSG00000183386 FHL3 -600448 sc-eQTL 9.46e-01 -0.013 0.19 0.05 CD4_CTL L2
ENSG00000183431 SF3A3 -584917 sc-eQTL 3.73e-01 0.174 0.195 0.05 CD4_CTL L2
ENSG00000183520 UTP11 -604100 sc-eQTL 2.13e-01 0.243 0.194 0.05 CD4_CTL L2
ENSG00000188786 MTF1 -454434 sc-eQTL 8.69e-01 0.0344 0.208 0.05 CD4_CTL L2
ENSG00000196449 YRDC -403050 sc-eQTL 2.43e-01 -0.231 0.197 0.05 CD4_CTL L2
ENSG00000197982 C1orf122 -401821 sc-eQTL 7.62e-01 -0.0596 0.196 0.05 CD4_CTL L2
ENSG00000204084 INPP5B -541899 sc-eQTL 9.51e-02 -0.345 0.206 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 -69253 sc-eQTL 1.49e-01 -0.276 0.191 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 940774 sc-eQTL 3.79e-01 0.17 0.193 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 -287091 sc-eQTL 2.77e-01 0.204 0.187 0.05 CD8_TEM L2
ENSG00000134697 GNL2 -190779 sc-eQTL 3.30e-01 -0.203 0.208 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A -69422 sc-eQTL 5.07e-01 0.104 0.156 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 -109616 sc-eQTL 7.60e-01 -0.0531 0.174 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 -149135 sc-eQTL 5.34e-01 0.119 0.191 0.05 CD8_TEM L2
ENSG00000183386 FHL3 -600448 sc-eQTL 9.36e-01 0.0167 0.206 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 -584917 sc-eQTL 8.92e-01 -0.0293 0.215 0.05 CD8_TEM L2
ENSG00000183520 UTP11 -604100 sc-eQTL 9.80e-01 0.00524 0.204 0.05 CD8_TEM L2
ENSG00000185090 MANEAL -388644 sc-eQTL 7.24e-01 -0.0678 0.192 0.05 CD8_TEM L2
ENSG00000185668 POU3F1 -641635 sc-eQTL 9.03e-02 -0.316 0.186 0.05 CD8_TEM L2
ENSG00000188786 MTF1 -454434 sc-eQTL 2.78e-01 -0.224 0.206 0.05 CD8_TEM L2
ENSG00000196449 YRDC -403050 sc-eQTL 4.35e-01 -0.156 0.2 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 -401821 sc-eQTL 5.11e-02 0.384 0.196 0.05 CD8_TEM L2
ENSG00000204084 INPP5B -541899 sc-eQTL 7.62e-01 -0.0616 0.203 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 -69253 sc-eQTL 3.75e-01 0.173 0.195 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 940774 sc-eQTL 8.29e-01 -0.0496 0.229 0.05 NK_HLA L2
ENSG00000116922 C1orf109 -287091 sc-eQTL 2.24e-01 -0.262 0.215 0.05 NK_HLA L2
ENSG00000134697 GNL2 -190779 sc-eQTL 5.02e-01 -0.148 0.22 0.05 NK_HLA L2
ENSG00000163874 ZC3H12A -69422 sc-eQTL 3.61e-01 0.15 0.164 0.05 NK_HLA L2
ENSG00000163875 MEAF6 -109616 sc-eQTL 9.94e-01 0.00146 0.194 0.05 NK_HLA L2
ENSG00000163877 SNIP1 -149135 sc-eQTL 4.81e-01 -0.148 0.21 0.05 NK_HLA L2
ENSG00000183386 FHL3 -600448 sc-eQTL 1.81e-01 0.215 0.16 0.05 NK_HLA L2
ENSG00000183431 SF3A3 -584917 sc-eQTL 3.16e-01 -0.22 0.218 0.05 NK_HLA L2
ENSG00000183520 UTP11 -604100 sc-eQTL 7.14e-02 0.396 0.219 0.05 NK_HLA L2
ENSG00000185090 MANEAL -388644 sc-eQTL 9.70e-02 -0.323 0.193 0.05 NK_HLA L2
ENSG00000188786 MTF1 -454434 sc-eQTL 9.94e-01 0.00166 0.216 0.05 NK_HLA L2
ENSG00000196449 YRDC -403050 sc-eQTL 3.45e-01 -0.182 0.193 0.05 NK_HLA L2
ENSG00000197982 C1orf122 -401821 sc-eQTL 6.97e-01 0.0804 0.206 0.05 NK_HLA L2
ENSG00000204084 INPP5B -541899 sc-eQTL 5.00e-01 0.144 0.213 0.05 NK_HLA L2
ENSG00000233621 LINC01137 -69253 sc-eQTL 8.62e-01 0.0373 0.214 0.05 NK_HLA L2
ENSG00000116898 MRPS15 940774 sc-eQTL 6.48e-01 0.115 0.252 0.052 gdT L2
ENSG00000116922 C1orf109 -287091 sc-eQTL 4.92e-01 -0.171 0.249 0.052 gdT L2
ENSG00000134690 CDCA8 -287323 sc-eQTL 6.88e-01 0.0863 0.215 0.052 gdT L2
ENSG00000134697 GNL2 -190779 sc-eQTL 5.61e-01 0.153 0.262 0.052 gdT L2
ENSG00000163874 ZC3H12A -69422 sc-eQTL 7.75e-01 0.0528 0.185 0.052 gdT L2
ENSG00000163875 MEAF6 -109616 sc-eQTL 4.17e-01 0.192 0.236 0.052 gdT L2
ENSG00000163877 SNIP1 -149135 sc-eQTL 8.59e-01 0.043 0.242 0.052 gdT L2
ENSG00000183386 FHL3 -600448 sc-eQTL 2.64e-01 0.256 0.229 0.052 gdT L2
ENSG00000183431 SF3A3 -584917 sc-eQTL 7.10e-01 -0.0946 0.254 0.052 gdT L2
ENSG00000183520 UTP11 -604100 sc-eQTL 5.69e-01 -0.151 0.265 0.052 gdT L2
ENSG00000185090 MANEAL -388644 sc-eQTL 4.04e-01 -0.177 0.211 0.052 gdT L2
ENSG00000185668 POU3F1 -641635 sc-eQTL 8.85e-01 -0.0318 0.22 0.052 gdT L2
ENSG00000188786 MTF1 -454434 sc-eQTL 3.57e-01 0.234 0.253 0.052 gdT L2
ENSG00000196449 YRDC -403050 sc-eQTL 5.19e-02 0.419 0.214 0.052 gdT L2
ENSG00000197982 C1orf122 -401821 sc-eQTL 1.77e-01 0.303 0.223 0.052 gdT L2
ENSG00000204084 INPP5B -541899 sc-eQTL 7.06e-01 -0.0905 0.239 0.052 gdT L2
ENSG00000233621 LINC01137 -69253 sc-eQTL 9.45e-01 0.0155 0.222 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163877 SNIP1 -149135 eQTL 0.0335 -0.0876 0.0412 0.0 0.0 0.0388
ENSG00000185090 MANEAL -388644 eQTL 0.0279 0.121 0.0548 0.00166 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina