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Genes within 1Mb (chr1:37020465:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000054116 TRAPPC3 864412 sc-eQTL 5.87e-02 -0.342 0.18 0.052 CD4_CTL L2
ENSG00000054118 THRAP3 796033 sc-eQTL 4.07e-01 -0.153 0.184 0.052 CD4_CTL L2
ENSG00000116863 ADPRHL2 931573 sc-eQTL 9.83e-01 0.00411 0.197 0.052 CD4_CTL L2
ENSG00000116871 MAP7D1 864886 sc-eQTL 8.25e-01 -0.0355 0.16 0.052 CD4_CTL L2
ENSG00000116898 MRPS15 556081 sc-eQTL 4.07e-02 -0.411 0.2 0.052 CD4_CTL L2
ENSG00000116922 C1orf109 -671784 sc-eQTL 5.05e-01 0.129 0.193 0.052 CD4_CTL L2
ENSG00000134697 GNL2 -575472 sc-eQTL 5.01e-01 0.13 0.193 0.052 CD4_CTL L2
ENSG00000142694 EVA1B 696311 sc-eQTL 3.13e-01 -0.176 0.174 0.052 CD4_CTL L2
ENSG00000163874 ZC3H12A -454115 sc-eQTL 1.94e-01 -0.227 0.174 0.052 CD4_CTL L2
ENSG00000163875 MEAF6 -494309 sc-eQTL 9.33e-01 -0.0163 0.195 0.052 CD4_CTL L2
ENSG00000163877 SNIP1 -533828 sc-eQTL 9.64e-02 -0.313 0.188 0.052 CD4_CTL L2
ENSG00000181817 LSM10 622557 sc-eQTL 7.91e-01 -0.048 0.181 0.052 CD4_CTL L2
ENSG00000183386 FHL3 -985141 sc-eQTL 7.52e-01 -0.057 0.18 0.052 CD4_CTL L2
ENSG00000183431 SF3A3 -969610 sc-eQTL 6.83e-01 0.0756 0.185 0.052 CD4_CTL L2
ENSG00000183520 UTP11 -988793 sc-eQTL 7.67e-01 0.0548 0.185 0.052 CD4_CTL L2
ENSG00000188786 MTF1 -839127 sc-eQTL 6.20e-03 0.534 0.193 0.052 CD4_CTL L2
ENSG00000196182 STK40 634569 sc-eQTL 7.44e-01 0.0593 0.181 0.052 CD4_CTL L2
ENSG00000196449 YRDC -787743 sc-eQTL 5.52e-01 -0.112 0.188 0.052 CD4_CTL L2
ENSG00000197982 C1orf122 -786514 sc-eQTL 6.23e-01 -0.0914 0.186 0.052 CD4_CTL L2
ENSG00000204084 INPP5B -926592 sc-eQTL 9.30e-01 0.0173 0.196 0.052 CD4_CTL L2
ENSG00000233621 LINC01137 -453946 sc-eQTL 6.01e-01 0.0949 0.181 0.052 CD4_CTL L2
ENSG00000054116 TRAPPC3 864412 sc-eQTL 6.62e-01 0.0805 0.184 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 796033 sc-eQTL 1.93e-01 0.239 0.182 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 931573 sc-eQTL 4.63e-01 0.144 0.196 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 864886 sc-eQTL 6.17e-01 0.0863 0.173 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 556081 sc-eQTL 3.87e-01 -0.159 0.183 0.05 CD8_TEM L2
ENSG00000116922 C1orf109 -671784 sc-eQTL 9.93e-01 -0.00167 0.178 0.05 CD8_TEM L2
ENSG00000134697 GNL2 -575472 sc-eQTL 6.04e-01 -0.103 0.198 0.05 CD8_TEM L2
ENSG00000142694 EVA1B 696311 sc-eQTL 1.76e-02 0.446 0.186 0.05 CD8_TEM L2
ENSG00000163874 ZC3H12A -454115 sc-eQTL 9.62e-01 0.00711 0.149 0.05 CD8_TEM L2
ENSG00000163875 MEAF6 -494309 sc-eQTL 2.09e-01 -0.207 0.165 0.05 CD8_TEM L2
ENSG00000163877 SNIP1 -533828 sc-eQTL 4.08e-03 0.517 0.178 0.05 CD8_TEM L2
ENSG00000181817 LSM10 622557 sc-eQTL 6.66e-01 -0.0754 0.175 0.05 CD8_TEM L2
ENSG00000183386 FHL3 -985141 sc-eQTL 8.68e-02 -0.335 0.195 0.05 CD8_TEM L2
ENSG00000183431 SF3A3 -969610 sc-eQTL 1.93e-02 -0.475 0.201 0.05 CD8_TEM L2
ENSG00000183520 UTP11 -988793 sc-eQTL 3.64e-01 0.177 0.194 0.05 CD8_TEM L2
ENSG00000185090 MANEAL -773337 sc-eQTL 3.43e-01 -0.173 0.182 0.05 CD8_TEM L2
ENSG00000188786 MTF1 -839127 sc-eQTL 1.05e-01 -0.318 0.195 0.05 CD8_TEM L2
ENSG00000196182 STK40 634569 sc-eQTL 1.47e-01 -0.267 0.183 0.05 CD8_TEM L2
ENSG00000196449 YRDC -787743 sc-eQTL 1.66e-02 -0.452 0.187 0.05 CD8_TEM L2
ENSG00000197982 C1orf122 -786514 sc-eQTL 6.67e-01 -0.0808 0.188 0.05 CD8_TEM L2
ENSG00000204084 INPP5B -926592 sc-eQTL 8.48e-01 -0.037 0.193 0.05 CD8_TEM L2
ENSG00000233621 LINC01137 -453946 sc-eQTL 7.05e-04 0.621 0.18 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 864412 sc-eQTL 9.92e-02 -0.296 0.178 0.051 cDC L2
ENSG00000054118 THRAP3 796033 sc-eQTL 1.87e-01 -0.228 0.172 0.051 cDC L2
ENSG00000116863 ADPRHL2 931573 sc-eQTL 4.82e-01 -0.127 0.181 0.051 cDC L2
ENSG00000116871 MAP7D1 864886 sc-eQTL 7.43e-01 -0.0504 0.153 0.051 cDC L2
ENSG00000116898 MRPS15 556081 sc-eQTL 8.42e-01 0.0349 0.175 0.051 cDC L2
ENSG00000116922 C1orf109 -671784 sc-eQTL 6.49e-01 -0.0793 0.174 0.051 cDC L2
ENSG00000119535 CSF3R 537187 sc-eQTL 9.33e-01 0.0118 0.141 0.051 cDC L2
ENSG00000134697 GNL2 -575472 sc-eQTL 4.43e-01 0.14 0.182 0.051 cDC L2
ENSG00000142694 EVA1B 696311 sc-eQTL 8.49e-01 0.0305 0.16 0.051 cDC L2
ENSG00000163874 ZC3H12A -454115 sc-eQTL 1.17e-01 0.242 0.154 0.051 cDC L2
ENSG00000163875 MEAF6 -494309 sc-eQTL 3.39e-02 -0.376 0.176 0.051 cDC L2
ENSG00000163877 SNIP1 -533828 sc-eQTL 7.96e-01 -0.0502 0.194 0.051 cDC L2
ENSG00000171812 COL8A2 895243 sc-eQTL 8.73e-01 0.0301 0.188 0.051 cDC L2
ENSG00000181817 LSM10 622557 sc-eQTL 6.83e-01 0.0747 0.182 0.051 cDC L2
ENSG00000183386 FHL3 -985141 sc-eQTL 4.57e-01 0.143 0.192 0.051 cDC L2
ENSG00000183431 SF3A3 -969610 sc-eQTL 2.36e-01 -0.222 0.187 0.051 cDC L2
ENSG00000183520 UTP11 -988793 sc-eQTL 8.41e-01 -0.0414 0.207 0.051 cDC L2
ENSG00000188786 MTF1 -839127 sc-eQTL 2.30e-01 0.238 0.197 0.051 cDC L2
ENSG00000196182 STK40 634569 sc-eQTL 3.89e-01 -0.174 0.202 0.051 cDC L2
ENSG00000196449 YRDC -787743 sc-eQTL 5.62e-02 -0.359 0.187 0.051 cDC L2
ENSG00000197982 C1orf122 -786514 sc-eQTL 4.34e-01 0.134 0.171 0.051 cDC L2
ENSG00000204084 INPP5B -926592 sc-eQTL 5.92e-01 -0.105 0.196 0.051 cDC L2
ENSG00000214193 SH3D21 714097 sc-eQTL 4.56e-01 0.13 0.174 0.051 cDC L2
ENSG00000233621 LINC01137 -453946 sc-eQTL 2.19e-01 0.221 0.179 0.051 cDC L2
ENSG00000054116 TRAPPC3 864412 sc-eQTL 6.93e-01 -0.071 0.179 0.051 intMono L2
ENSG00000054118 THRAP3 796033 sc-eQTL 7.50e-01 0.0597 0.187 0.051 intMono L2
ENSG00000116863 ADPRHL2 931573 sc-eQTL 5.59e-01 -0.11 0.188 0.051 intMono L2
ENSG00000116871 MAP7D1 864886 sc-eQTL 3.38e-01 0.147 0.153 0.051 intMono L2
ENSG00000116898 MRPS15 556081 sc-eQTL 5.51e-01 -0.101 0.168 0.051 intMono L2
ENSG00000116922 C1orf109 -671784 sc-eQTL 2.89e-01 0.187 0.176 0.051 intMono L2
ENSG00000119535 CSF3R 537187 sc-eQTL 5.30e-02 0.277 0.142 0.051 intMono L2
ENSG00000134697 GNL2 -575472 sc-eQTL 3.42e-01 -0.186 0.195 0.051 intMono L2
ENSG00000142694 EVA1B 696311 sc-eQTL 2.64e-01 -0.185 0.165 0.051 intMono L2
ENSG00000163874 ZC3H12A -454115 sc-eQTL 8.59e-01 -0.0284 0.159 0.051 intMono L2
ENSG00000163875 MEAF6 -494309 sc-eQTL 5.67e-01 0.111 0.194 0.051 intMono L2
ENSG00000163877 SNIP1 -533828 sc-eQTL 8.67e-01 -0.0311 0.186 0.051 intMono L2
ENSG00000171812 COL8A2 895243 sc-eQTL 1.25e-01 0.271 0.176 0.051 intMono L2
ENSG00000181817 LSM10 622557 sc-eQTL 8.67e-01 0.0309 0.185 0.051 intMono L2
ENSG00000183386 FHL3 -985141 sc-eQTL 4.54e-01 -0.138 0.184 0.051 intMono L2
ENSG00000183431 SF3A3 -969610 sc-eQTL 5.61e-01 0.11 0.189 0.051 intMono L2
ENSG00000183520 UTP11 -988793 sc-eQTL 9.36e-01 -0.0142 0.177 0.051 intMono L2
ENSG00000188786 MTF1 -839127 sc-eQTL 9.01e-01 -0.0239 0.193 0.051 intMono L2
ENSG00000196182 STK40 634569 sc-eQTL 7.87e-01 0.047 0.174 0.051 intMono L2
ENSG00000196449 YRDC -787743 sc-eQTL 1.02e-01 -0.301 0.183 0.051 intMono L2
ENSG00000197982 C1orf122 -786514 sc-eQTL 6.24e-01 0.0816 0.166 0.051 intMono L2
ENSG00000204084 INPP5B -926592 sc-eQTL 6.99e-01 -0.0731 0.189 0.051 intMono L2
ENSG00000233621 LINC01137 -453946 sc-eQTL 3.95e-01 0.147 0.173 0.051 intMono L2
ENSG00000054116 TRAPPC3 864412 sc-eQTL 2.39e-01 -0.239 0.202 0.054 pDC L2
ENSG00000054118 THRAP3 796033 sc-eQTL 9.30e-01 0.016 0.182 0.054 pDC L2
ENSG00000116863 ADPRHL2 931573 sc-eQTL 4.72e-01 -0.142 0.196 0.054 pDC L2
ENSG00000116871 MAP7D1 864886 sc-eQTL 9.29e-02 0.298 0.176 0.054 pDC L2
ENSG00000116898 MRPS15 556081 sc-eQTL 7.81e-01 0.0541 0.194 0.054 pDC L2
ENSG00000116922 C1orf109 -671784 sc-eQTL 6.99e-01 -0.0695 0.179 0.054 pDC L2
ENSG00000119535 CSF3R 537187 sc-eQTL 1.70e-01 -0.167 0.121 0.054 pDC L2
ENSG00000134697 GNL2 -575472 sc-eQTL 6.89e-01 -0.0797 0.199 0.054 pDC L2
ENSG00000142694 EVA1B 696311 sc-eQTL 8.48e-01 -0.0294 0.153 0.054 pDC L2
ENSG00000163874 ZC3H12A -454115 sc-eQTL 3.95e-01 -0.173 0.203 0.054 pDC L2
ENSG00000163875 MEAF6 -494309 sc-eQTL 7.11e-01 0.0735 0.198 0.054 pDC L2
ENSG00000163877 SNIP1 -533828 sc-eQTL 7.63e-01 -0.0665 0.22 0.054 pDC L2
ENSG00000171812 COL8A2 895243 sc-eQTL 7.76e-01 0.0553 0.194 0.054 pDC L2
ENSG00000181817 LSM10 622557 sc-eQTL 3.10e-01 -0.189 0.186 0.054 pDC L2
ENSG00000183386 FHL3 -985141 sc-eQTL 4.51e-01 -0.121 0.16 0.054 pDC L2
ENSG00000183431 SF3A3 -969610 sc-eQTL 3.04e-01 0.21 0.204 0.054 pDC L2
ENSG00000183520 UTP11 -988793 sc-eQTL 2.10e-01 -0.275 0.218 0.054 pDC L2
ENSG00000188786 MTF1 -839127 sc-eQTL 3.46e-04 0.684 0.187 0.054 pDC L2
ENSG00000196182 STK40 634569 sc-eQTL 6.01e-01 -0.102 0.195 0.054 pDC L2
ENSG00000196449 YRDC -787743 sc-eQTL 8.48e-02 -0.314 0.181 0.054 pDC L2
ENSG00000197982 C1orf122 -786514 sc-eQTL 1.36e-02 0.491 0.197 0.054 pDC L2
ENSG00000204084 INPP5B -926592 sc-eQTL 7.23e-02 0.343 0.189 0.054 pDC L2
ENSG00000214193 SH3D21 714097 sc-eQTL 1.59e-01 0.261 0.185 0.054 pDC L2
ENSG00000233621 LINC01137 -453946 sc-eQTL 8.13e-01 -0.0388 0.164 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 864412 eQTL 0.0382 0.0538 0.0259 0.00107 0.0 0.0471
ENSG00000171812 COL8A2 895243 eQTL 0.00445 0.148 0.052 0.0028 0.0 0.0471
ENSG00000183520 UTP11 -988793 eQTL 0.00382 -0.11 0.0378 0.00432 0.00101 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000119535 \N 537187 1.26e-06 9.36e-07 2.95e-07 1.02e-06 2.31e-07 4.51e-07 7.96e-07 3.02e-07 1.11e-06 3.11e-07 1.35e-06 5.77e-07 1.34e-06 2.57e-07 4.19e-07 6.72e-07 7.68e-07 5.63e-07 8.61e-07 6.52e-07 4.57e-07 1.04e-06 6.18e-07 4.87e-07 1.74e-06 3.75e-07 6.16e-07 7.14e-07 6.84e-07 1.11e-06 5.37e-07 4.5e-08 2.33e-07 3.03e-07 4.49e-07 4.62e-07 5.04e-07 1.58e-07 1.41e-07 8.88e-08 1.67e-07 9.14e-07 2.46e-07 1.6e-07 1.55e-07 7.43e-08 1.9e-07 8.58e-08 8.53e-08
ENSG00000183520 UTP11 -988793 2.95e-07 1.53e-07 8.55e-08 2.61e-07 1.01e-07 7.75e-08 1.99e-07 5.56e-08 1.59e-07 7.6e-08 1.76e-07 1.2e-07 1.95e-07 8e-08 6.27e-08 9.11e-08 4.18e-08 1.91e-07 9.71e-08 8.52e-08 1.33e-07 1.7e-07 1.58e-07 3.58e-08 2.09e-07 1.65e-07 1.23e-07 1.42e-07 1.31e-07 1.39e-07 1.21e-07 2.99e-08 4.16e-08 9.78e-08 6.78e-08 4.68e-08 5.54e-08 7.51e-08 6.39e-08 6.55e-08 5.05e-08 1.46e-07 2.62e-08 4.11e-08 5.84e-08 1.01e-08 8.67e-08 2.02e-09 4.98e-08