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Genes within 1Mb (chr1:36870633:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000054116 TRAPPC3 714580 sc-eQTL 3.85e-01 -0.162 0.186 0.051 CD8_TCM L2
ENSG00000054118 THRAP3 646201 sc-eQTL 7.79e-01 -0.0513 0.183 0.051 CD8_TCM L2
ENSG00000116863 ADPRHL2 781741 sc-eQTL 4.69e-01 -0.145 0.201 0.051 CD8_TCM L2
ENSG00000116871 MAP7D1 715054 sc-eQTL 4.99e-01 -0.1 0.148 0.051 CD8_TCM L2
ENSG00000116898 MRPS15 406249 sc-eQTL 3.50e-01 0.189 0.202 0.051 CD8_TCM L2
ENSG00000116922 C1orf109 -821616 sc-eQTL 6.05e-01 -0.0992 0.192 0.051 CD8_TCM L2
ENSG00000126070 AGO3 939915 sc-eQTL 1.88e-01 -0.25 0.19 0.051 CD8_TCM L2
ENSG00000134697 GNL2 -725304 sc-eQTL 7.37e-01 0.0647 0.193 0.051 CD8_TCM L2
ENSG00000142694 EVA1B 546479 sc-eQTL 3.73e-01 0.159 0.178 0.051 CD8_TCM L2
ENSG00000163874 ZC3H12A -603947 sc-eQTL 6.47e-01 -0.0749 0.163 0.051 CD8_TCM L2
ENSG00000163875 MEAF6 -644141 sc-eQTL 6.28e-01 -0.0842 0.173 0.051 CD8_TCM L2
ENSG00000163877 SNIP1 -683660 sc-eQTL 8.96e-01 0.0221 0.169 0.051 CD8_TCM L2
ENSG00000181817 LSM10 472725 sc-eQTL 9.52e-01 0.00902 0.15 0.051 CD8_TCM L2
ENSG00000185090 MANEAL -923169 sc-eQTL 5.66e-01 -0.0918 0.16 0.051 CD8_TCM L2
ENSG00000188786 MTF1 -988959 sc-eQTL 4.92e-01 0.141 0.205 0.051 CD8_TCM L2
ENSG00000196182 STK40 484737 sc-eQTL 9.24e-01 0.0179 0.187 0.051 CD8_TCM L2
ENSG00000196449 YRDC -937575 sc-eQTL 8.52e-02 0.292 0.169 0.051 CD8_TCM L2
ENSG00000197982 C1orf122 -936346 sc-eQTL 6.25e-01 0.0892 0.182 0.051 CD8_TCM L2
ENSG00000233621 LINC01137 -603778 sc-eQTL 4.16e-01 0.154 0.189 0.051 CD8_TCM L2
ENSG00000054116 TRAPPC3 714580 sc-eQTL 6.83e-02 0.274 0.15 0.05 Pro_T L2
ENSG00000054118 THRAP3 646201 sc-eQTL 8.29e-01 -0.0367 0.17 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 781741 sc-eQTL 8.21e-01 -0.0436 0.193 0.05 Pro_T L2
ENSG00000116871 MAP7D1 715054 sc-eQTL 7.54e-01 0.0434 0.138 0.05 Pro_T L2
ENSG00000116898 MRPS15 406249 sc-eQTL 6.55e-01 -0.0605 0.135 0.05 Pro_T L2
ENSG00000116922 C1orf109 -821616 sc-eQTL 6.84e-01 -0.0795 0.195 0.05 Pro_T L2
ENSG00000126070 AGO3 939915 sc-eQTL 1.13e-01 0.297 0.187 0.05 Pro_T L2
ENSG00000134690 CDCA8 -821848 sc-eQTL 5.24e-01 0.075 0.118 0.05 Pro_T L2
ENSG00000134697 GNL2 -725304 sc-eQTL 7.52e-01 -0.0499 0.158 0.05 Pro_T L2
ENSG00000142694 EVA1B 546479 sc-eQTL 2.81e-01 0.192 0.178 0.05 Pro_T L2
ENSG00000163874 ZC3H12A -603947 sc-eQTL 6.50e-01 -0.065 0.143 0.05 Pro_T L2
ENSG00000163875 MEAF6 -644141 sc-eQTL 7.79e-01 0.0432 0.154 0.05 Pro_T L2
ENSG00000163877 SNIP1 -683660 sc-eQTL 2.17e-01 -0.225 0.182 0.05 Pro_T L2
ENSG00000181817 LSM10 472725 sc-eQTL 1.86e-01 0.215 0.162 0.05 Pro_T L2
ENSG00000185090 MANEAL -923169 sc-eQTL 7.34e-01 -0.0584 0.171 0.05 Pro_T L2
ENSG00000188786 MTF1 -988959 sc-eQTL 7.89e-01 -0.0526 0.197 0.05 Pro_T L2
ENSG00000196182 STK40 484737 sc-eQTL 5.18e-01 0.126 0.194 0.05 Pro_T L2
ENSG00000196449 YRDC -937575 sc-eQTL 5.15e-01 0.114 0.175 0.05 Pro_T L2
ENSG00000197982 C1orf122 -936346 sc-eQTL 4.59e-01 -0.12 0.161 0.05 Pro_T L2
ENSG00000233621 LINC01137 -603778 sc-eQTL 5.51e-01 -0.107 0.178 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 714580 sc-eQTL 4.50e-01 0.137 0.181 0.058 gdT L2
ENSG00000054118 THRAP3 646201 sc-eQTL 7.43e-01 -0.0694 0.211 0.058 gdT L2
ENSG00000116863 ADPRHL2 781741 sc-eQTL 3.81e-01 0.179 0.204 0.058 gdT L2
ENSG00000116871 MAP7D1 715054 sc-eQTL 8.73e-01 0.0278 0.174 0.058 gdT L2
ENSG00000116898 MRPS15 406249 sc-eQTL 7.33e-02 0.38 0.211 0.058 gdT L2
ENSG00000116922 C1orf109 -821616 sc-eQTL 2.79e-01 -0.228 0.21 0.058 gdT L2
ENSG00000126070 AGO3 939915 sc-eQTL 8.79e-01 -0.0311 0.204 0.058 gdT L2
ENSG00000134690 CDCA8 -821848 sc-eQTL 1.42e-01 0.266 0.18 0.058 gdT L2
ENSG00000134697 GNL2 -725304 sc-eQTL 4.68e-01 -0.161 0.221 0.058 gdT L2
ENSG00000142694 EVA1B 546479 sc-eQTL 4.46e-01 0.146 0.192 0.058 gdT L2
ENSG00000163874 ZC3H12A -603947 sc-eQTL 5.73e-01 0.0881 0.156 0.058 gdT L2
ENSG00000163875 MEAF6 -644141 sc-eQTL 7.88e-01 0.0537 0.199 0.058 gdT L2
ENSG00000163877 SNIP1 -683660 sc-eQTL 5.41e-01 0.125 0.204 0.058 gdT L2
ENSG00000181817 LSM10 472725 sc-eQTL 7.74e-03 -0.513 0.19 0.058 gdT L2
ENSG00000185090 MANEAL -923169 sc-eQTL 1.63e-01 -0.249 0.177 0.058 gdT L2
ENSG00000188786 MTF1 -988959 sc-eQTL 8.68e-01 0.0356 0.215 0.058 gdT L2
ENSG00000196182 STK40 484737 sc-eQTL 1.44e-01 0.27 0.184 0.058 gdT L2
ENSG00000196449 YRDC -937575 sc-eQTL 9.06e-01 0.0216 0.183 0.058 gdT L2
ENSG00000197982 C1orf122 -936346 sc-eQTL 7.20e-01 -0.0682 0.19 0.058 gdT L2
ENSG00000233621 LINC01137 -603778 sc-eQTL 7.90e-01 0.0501 0.188 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116863 ADPRHL2 781741 eQTL 0.0272 0.0693 0.0313 0.0 0.0 0.0579
ENSG00000163877 SNIP1 -683660 eQTL 0.00525 -0.102 0.0366 0.0 0.0 0.0579

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116885 \N 420182 8.85e-07 6.07e-07 1.11e-07 3.96e-07 1.18e-07 2.16e-07 5.65e-07 1.59e-07 5.88e-07 2.62e-07 8.08e-07 4.24e-07 9.37e-07 1.48e-07 2.77e-07 2.83e-07 3.63e-07 4.2e-07 2.17e-07 1.9e-07 2.05e-07 4.11e-07 3.77e-07 2.17e-07 9.15e-07 2.74e-07 3.04e-07 2.83e-07 4.06e-07 5.99e-07 3.38e-07 6.31e-08 5.39e-08 1.69e-07 3.42e-07 1.28e-07 8.35e-08 1.11e-07 7.45e-08 2.8e-08 1.01e-07 5.52e-07 2.84e-08 1.85e-08 1.29e-07 1.39e-08 1.01e-07 1.2e-08 5.19e-08
ENSG00000235673 \N -970353 2.69e-07 1.25e-07 3.69e-08 1.82e-07 9.16e-08 1e-07 1.44e-07 5.37e-08 1.45e-07 4.74e-08 1.62e-07 8.55e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.98e-08 1.21e-07 5.36e-08 4.04e-08 1.04e-07 1.27e-07 1.34e-07 3.42e-08 1.4e-07 1.14e-07 1.06e-07 9.65e-08 1.08e-07 1.1e-07 9.64e-08 3.87e-08 3.16e-08 8.44e-08 8.21e-08 3.94e-08 5.03e-08 9.25e-08 6.54e-08 3.77e-08 5.13e-08 1.35e-07 4.33e-08 2.88e-08 5.75e-08 1.83e-08 1.22e-07 3.92e-09 4.85e-08