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Genes within 1Mb (chr1:36603492:C:CAGATGGAATCAAGATCCCA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000054116 TRAPPC3 447439 sc-eQTL 1.83e-01 0.242 0.181 0.05 CD4_CTL L2
ENSG00000054118 THRAP3 379060 sc-eQTL 6.04e-01 0.0962 0.185 0.05 CD4_CTL L2
ENSG00000092847 AGO1 733684 sc-eQTL 6.49e-01 -0.0919 0.202 0.05 CD4_CTL L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 8.61e-01 0.0348 0.198 0.05 CD4_CTL L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 8.13e-01 -0.0381 0.161 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 139108 sc-eQTL 7.19e-01 0.0729 0.202 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 961966 sc-eQTL 5.31e-01 0.118 0.188 0.05 CD4_CTL L2
ENSG00000126070 AGO3 672774 sc-eQTL 6.33e-02 0.357 0.191 0.05 CD4_CTL L2
ENSG00000134697 GNL2 -992445 sc-eQTL 5.55e-01 0.115 0.194 0.05 CD4_CTL L2
ENSG00000134698 AGO4 795476 sc-eQTL 9.67e-01 0.00747 0.179 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 884598 sc-eQTL 5.11e-01 -0.12 0.182 0.05 CD4_CTL L2
ENSG00000142694 EVA1B 279338 sc-eQTL 2.59e-01 -0.198 0.175 0.05 CD4_CTL L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 7.52e-03 0.465 0.172 0.05 CD4_CTL L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 7.78e-02 0.343 0.194 0.05 CD4_CTL L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 3.48e-01 0.178 0.189 0.05 CD4_CTL L2
ENSG00000181817 LSM10 205584 sc-eQTL 2.15e-01 0.226 0.181 0.05 CD4_CTL L2
ENSG00000196182 STK40 217596 sc-eQTL 9.63e-01 -0.00846 0.182 0.05 CD4_CTL L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 3.11e-01 -0.185 0.182 0.05 CD4_CTL L2
ENSG00000054116 TRAPPC3 447439 sc-eQTL 7.83e-01 -0.0541 0.196 0.053 CD8_TCM L2
ENSG00000054118 THRAP3 379060 sc-eQTL 1.32e-01 -0.289 0.191 0.053 CD8_TCM L2
ENSG00000092847 AGO1 733684 sc-eQTL 9.96e-01 0.00106 0.197 0.053 CD8_TCM L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 6.69e-02 -0.387 0.21 0.053 CD8_TCM L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 9.25e-03 -0.403 0.153 0.053 CD8_TCM L2
ENSG00000116898 MRPS15 139108 sc-eQTL 2.10e-01 0.267 0.212 0.053 CD8_TCM L2
ENSG00000126067 PSMB2 961966 sc-eQTL 8.46e-01 -0.0375 0.193 0.053 CD8_TCM L2
ENSG00000126070 AGO3 672774 sc-eQTL 5.59e-01 0.117 0.2 0.053 CD8_TCM L2
ENSG00000134697 GNL2 -992445 sc-eQTL 6.14e-01 0.102 0.203 0.053 CD8_TCM L2
ENSG00000134698 AGO4 795476 sc-eQTL 1.89e-02 -0.48 0.203 0.053 CD8_TCM L2
ENSG00000142686 C1orf216 884598 sc-eQTL 5.78e-01 -0.106 0.191 0.053 CD8_TCM L2
ENSG00000142694 EVA1B 279338 sc-eQTL 9.41e-01 -0.0139 0.188 0.053 CD8_TCM L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 5.62e-01 0.0998 0.172 0.053 CD8_TCM L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 7.14e-01 -0.0671 0.183 0.053 CD8_TCM L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 7.04e-01 -0.068 0.178 0.053 CD8_TCM L2
ENSG00000181817 LSM10 205584 sc-eQTL 9.21e-01 0.0157 0.158 0.053 CD8_TCM L2
ENSG00000196182 STK40 217596 sc-eQTL 9.30e-01 0.0172 0.197 0.053 CD8_TCM L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 9.90e-01 -0.00239 0.199 0.053 CD8_TCM L2
ENSG00000054116 TRAPPC3 447439 sc-eQTL 2.20e-01 0.229 0.186 0.053 CD8_TEM L2
ENSG00000054118 THRAP3 379060 sc-eQTL 8.79e-01 0.0283 0.186 0.053 CD8_TEM L2
ENSG00000092847 AGO1 733684 sc-eQTL 4.59e-01 -0.144 0.194 0.053 CD8_TEM L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 4.81e-02 -0.392 0.197 0.053 CD8_TEM L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 1.26e-01 -0.268 0.174 0.053 CD8_TEM L2
ENSG00000116898 MRPS15 139108 sc-eQTL 2.47e-01 0.215 0.186 0.053 CD8_TEM L2
ENSG00000126067 PSMB2 961966 sc-eQTL 1.94e-01 -0.231 0.177 0.053 CD8_TEM L2
ENSG00000126070 AGO3 672774 sc-eQTL 6.51e-01 0.0883 0.195 0.053 CD8_TEM L2
ENSG00000134697 GNL2 -992445 sc-eQTL 8.94e-01 0.0267 0.201 0.053 CD8_TEM L2
ENSG00000134698 AGO4 795476 sc-eQTL 6.13e-01 -0.0996 0.196 0.053 CD8_TEM L2
ENSG00000142686 C1orf216 884598 sc-eQTL 7.20e-01 -0.0664 0.185 0.053 CD8_TEM L2
ENSG00000142694 EVA1B 279338 sc-eQTL 8.95e-01 0.0252 0.192 0.053 CD8_TEM L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 3.24e-01 -0.149 0.15 0.053 CD8_TEM L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 2.31e-01 -0.2 0.167 0.053 CD8_TEM L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 8.10e-03 -0.484 0.181 0.053 CD8_TEM L2
ENSG00000181817 LSM10 205584 sc-eQTL 3.67e-01 0.16 0.177 0.053 CD8_TEM L2
ENSG00000196182 STK40 217596 sc-eQTL 4.13e-01 0.153 0.187 0.053 CD8_TEM L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 7.64e-01 -0.0566 0.188 0.053 CD8_TEM L2
ENSG00000054116 TRAPPC3 447439 sc-eQTL 3.31e-01 -0.182 0.187 0.05 NK_HLA L2
ENSG00000054118 THRAP3 379060 sc-eQTL 5.11e-01 -0.135 0.205 0.05 NK_HLA L2
ENSG00000092847 AGO1 733684 sc-eQTL 8.09e-01 -0.0457 0.189 0.05 NK_HLA L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 7.37e-01 -0.069 0.206 0.05 NK_HLA L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 2.51e-01 -0.184 0.159 0.05 NK_HLA L2
ENSG00000116898 MRPS15 139108 sc-eQTL 4.68e-01 0.156 0.214 0.05 NK_HLA L2
ENSG00000126067 PSMB2 961966 sc-eQTL 7.07e-01 -0.0756 0.2 0.05 NK_HLA L2
ENSG00000126070 AGO3 672774 sc-eQTL 4.13e-01 -0.162 0.198 0.05 NK_HLA L2
ENSG00000134697 GNL2 -992445 sc-eQTL 3.96e-01 0.175 0.206 0.05 NK_HLA L2
ENSG00000134698 AGO4 795476 sc-eQTL 9.20e-01 -0.0201 0.2 0.05 NK_HLA L2
ENSG00000142686 C1orf216 884598 sc-eQTL 3.74e-01 0.171 0.192 0.05 NK_HLA L2
ENSG00000142694 EVA1B 279338 sc-eQTL 6.66e-01 0.0777 0.18 0.05 NK_HLA L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 2.36e-02 -0.347 0.152 0.05 NK_HLA L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 8.22e-01 -0.0408 0.181 0.05 NK_HLA L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 8.75e-01 -0.031 0.197 0.05 NK_HLA L2
ENSG00000181817 LSM10 205584 sc-eQTL 9.44e-01 0.0139 0.197 0.05 NK_HLA L2
ENSG00000196182 STK40 217596 sc-eQTL 1.76e-01 -0.242 0.178 0.05 NK_HLA L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 2.22e-02 0.456 0.198 0.05 NK_HLA L2
ENSG00000054116 TRAPPC3 447439 sc-eQTL 9.64e-01 -0.00678 0.15 0.05 Pro_T L2
ENSG00000054118 THRAP3 379060 sc-eQTL 4.34e-01 -0.133 0.169 0.05 Pro_T L2
ENSG00000092847 AGO1 733684 sc-eQTL 9.00e-01 -0.0255 0.203 0.05 Pro_T L2
ENSG00000092853 CLSPN 833514 sc-eQTL 2.42e-01 0.107 0.0914 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 5.24e-01 0.122 0.192 0.05 Pro_T L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 2.48e-01 -0.159 0.137 0.05 Pro_T L2
ENSG00000116898 MRPS15 139108 sc-eQTL 5.56e-01 -0.0793 0.135 0.05 Pro_T L2
ENSG00000126067 PSMB2 961966 sc-eQTL 2.12e-01 0.129 0.103 0.05 Pro_T L2
ENSG00000126070 AGO3 672774 sc-eQTL 2.01e-01 0.239 0.186 0.05 Pro_T L2
ENSG00000134697 GNL2 -992445 sc-eQTL 5.03e-01 -0.105 0.157 0.05 Pro_T L2
ENSG00000134698 AGO4 795476 sc-eQTL 7.49e-01 -0.055 0.172 0.05 Pro_T L2
ENSG00000142686 C1orf216 884598 sc-eQTL 8.31e-01 0.038 0.178 0.05 Pro_T L2
ENSG00000142694 EVA1B 279338 sc-eQTL 7.69e-02 0.313 0.176 0.05 Pro_T L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 1.17e-01 -0.222 0.141 0.05 Pro_T L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 8.48e-01 0.0293 0.153 0.05 Pro_T L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 8.96e-02 -0.307 0.18 0.05 Pro_T L2
ENSG00000181817 LSM10 205584 sc-eQTL 1.35e-01 0.242 0.161 0.05 Pro_T L2
ENSG00000196182 STK40 217596 sc-eQTL 8.97e-01 -0.0251 0.194 0.05 Pro_T L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 9.26e-01 0.0166 0.178 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 447439 sc-eQTL 1.37e-01 -0.337 0.225 0.051 pDC L2
ENSG00000054118 THRAP3 379060 sc-eQTL 3.92e-01 0.174 0.203 0.051 pDC L2
ENSG00000092847 AGO1 733684 sc-eQTL 4.05e-01 -0.192 0.23 0.051 pDC L2
ENSG00000092853 CLSPN 833514 sc-eQTL 4.42e-02 0.335 0.165 0.051 pDC L2
ENSG00000116863 ADPRHL2 514600 sc-eQTL 2.94e-01 0.23 0.219 0.051 pDC L2
ENSG00000116871 MAP7D1 447913 sc-eQTL 1.62e-01 0.277 0.197 0.051 pDC L2
ENSG00000116898 MRPS15 139108 sc-eQTL 1.75e-01 -0.294 0.216 0.051 pDC L2
ENSG00000119535 CSF3R 120214 sc-eQTL 2.65e-01 -0.152 0.136 0.051 pDC L2
ENSG00000126067 PSMB2 961966 sc-eQTL 3.11e-01 0.2 0.197 0.051 pDC L2
ENSG00000126070 AGO3 672774 sc-eQTL 2.91e-01 -0.223 0.21 0.051 pDC L2
ENSG00000134697 GNL2 -992445 sc-eQTL 9.99e-01 -0.000146 0.222 0.051 pDC L2
ENSG00000134698 AGO4 795476 sc-eQTL 6.31e-01 0.0992 0.206 0.051 pDC L2
ENSG00000142686 C1orf216 884598 sc-eQTL 1.74e-01 -0.242 0.177 0.051 pDC L2
ENSG00000142694 EVA1B 279338 sc-eQTL 9.28e-01 -0.0154 0.17 0.051 pDC L2
ENSG00000163874 ZC3H12A -871088 sc-eQTL 5.09e-01 0.15 0.227 0.051 pDC L2
ENSG00000163875 MEAF6 -911282 sc-eQTL 1.81e-01 0.295 0.219 0.051 pDC L2
ENSG00000163877 SNIP1 -950801 sc-eQTL 2.13e-01 -0.306 0.245 0.051 pDC L2
ENSG00000171812 COL8A2 478270 sc-eQTL 6.05e-01 -0.112 0.217 0.051 pDC L2
ENSG00000181817 LSM10 205584 sc-eQTL 2.45e-01 -0.241 0.207 0.051 pDC L2
ENSG00000196182 STK40 217596 sc-eQTL 2.15e-01 -0.27 0.217 0.051 pDC L2
ENSG00000214193 SH3D21 297124 sc-eQTL 7.89e-02 0.364 0.206 0.051 pDC L2
ENSG00000233621 LINC01137 -870919 sc-eQTL 5.91e-01 -0.0985 0.183 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000163875 MEAF6 -911282 eQTL 0.0497 -0.0624 0.0317 0.0 0.0 0.0623
ENSG00000232273 FTH1P1 -941271 eQTL 0.0293 -0.11 0.0505 0.00108 0.0 0.0623

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina