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Genes within 1Mb (chr1:36391436:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 833963 sc-eQTL 8.41e-01 -0.0421 0.209 0.056 pDC L2
ENSG00000054116 TRAPPC3 235383 sc-eQTL 9.77e-01 0.0061 0.211 0.056 pDC L2
ENSG00000054118 THRAP3 167004 sc-eQTL 8.81e-01 -0.0283 0.189 0.056 pDC L2
ENSG00000092847 AGO1 521628 sc-eQTL 3.61e-01 -0.196 0.214 0.056 pDC L2
ENSG00000092853 CLSPN 621458 sc-eQTL 9.65e-01 0.00683 0.156 0.056 pDC L2
ENSG00000116863 ADPRHL2 302544 sc-eQTL 5.44e-01 0.124 0.204 0.056 pDC L2
ENSG00000116871 MAP7D1 235857 sc-eQTL 2.01e-01 -0.236 0.184 0.056 pDC L2
ENSG00000116898 MRPS15 -72948 sc-eQTL 1.50e-01 0.29 0.201 0.056 pDC L2
ENSG00000119535 CSF3R -91842 sc-eQTL 9.98e-01 0.000259 0.127 0.056 pDC L2
ENSG00000126067 PSMB2 749910 sc-eQTL 5.11e-01 0.121 0.183 0.056 pDC L2
ENSG00000126070 AGO3 460718 sc-eQTL 4.03e-01 -0.164 0.196 0.056 pDC L2
ENSG00000134698 AGO4 583420 sc-eQTL 3.50e-01 0.18 0.192 0.056 pDC L2
ENSG00000142686 C1orf216 672542 sc-eQTL 6.30e-01 -0.0801 0.166 0.056 pDC L2
ENSG00000142687 KIAA0319L 833486 sc-eQTL 9.42e-01 -0.0165 0.227 0.056 pDC L2
ENSG00000142694 EVA1B 67282 sc-eQTL 4.76e-01 0.113 0.159 0.056 pDC L2
ENSG00000171812 COL8A2 266214 sc-eQTL 5.67e-01 0.116 0.202 0.056 pDC L2
ENSG00000181817 LSM10 -6472 sc-eQTL 6.17e-01 -0.0971 0.194 0.056 pDC L2
ENSG00000196182 STK40 5540 sc-eQTL 6.21e-01 -0.101 0.203 0.056 pDC L2
ENSG00000214193 SH3D21 85068 sc-eQTL 6.34e-01 -0.0923 0.193 0.056 pDC L2
ENSG00000239636 AC004865.2 813707 sc-eQTL 2.05e-01 0.271 0.213 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 235383 eQTL 0.000423 0.0927 0.0262 0.0 0.0 0.0442
ENSG00000116871 MAP7D1 235857 eQTL 2.03e-07 0.155 0.0296 0.0 0.0 0.0442
ENSG00000134698 AGO4 583420 eQTL 0.0136 0.0503 0.0204 0.0 0.0 0.0442
ENSG00000142686 C1orf216 672542 eQTL 1.43e-09 0.254 0.0416 0.0 0.0 0.0442
ENSG00000171812 COL8A2 266214 eQTL 0.000983 -0.174 0.0527 0.0 0.0 0.0442
ENSG00000239636 AC004865.2 813707 eQTL 0.000152 0.264 0.0694 0.0 0.0 0.0442

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116871 MAP7D1 235857 1.54e-06 2.37e-06 2.59e-07 1.7e-06 3.96e-07 6.28e-07 1.63e-06 3.85e-07 1.78e-06 6.18e-07 2.01e-06 7.79e-07 2.61e-06 8.78e-07 4.05e-07 9.16e-07 1.01e-06 1.12e-06 5.81e-07 8.01e-07 6.48e-07 1.72e-06 9.01e-07 5.48e-07 2.3e-06 4.17e-07 9.55e-07 8.48e-07 1.23e-06 1.24e-06 8.51e-07 3.11e-07 3.58e-07 6.91e-07 9e-07 5.3e-07 9.08e-07 4.2e-07 5.35e-07 3.01e-07 1.18e-07 1.49e-06 3.78e-07 1.6e-07 2.62e-07 3.38e-07 2.36e-07 1.96e-07 1.9e-07
ENSG00000134698 AGO4 583420 2.95e-07 1.59e-07 5.72e-08 2.49e-07 1.03e-07 8.37e-08 1.67e-07 5.85e-08 1.44e-07 6.75e-08 1.63e-07 1.11e-07 2.29e-07 8.44e-08 5.97e-08 7.23e-08 4.31e-08 1.77e-07 7.16e-08 6.16e-08 1.39e-07 1.26e-07 1.45e-07 2.83e-08 1.63e-07 1.26e-07 1.12e-07 1.12e-07 1.12e-07 1.07e-07 1.09e-07 7.59e-08 3.56e-08 1.01e-07 6.87e-08 3.36e-08 1.02e-07 6.67e-08 6.35e-08 5.45e-08 4.35e-08 1.4e-07 1.7e-08 2.03e-08 3.81e-08 1.35e-08 1.15e-07 0.0 4.91e-08
ENSG00000142686 C1orf216 672542 2.76e-07 1.36e-07 4.91e-08 2.26e-07 9.24e-08 9.48e-08 1.53e-07 5.48e-08 1.45e-07 5.42e-08 1.57e-07 9e-08 1.71e-07 7.95e-08 5.72e-08 7.53e-08 4.01e-08 1.44e-07 6.32e-08 5.07e-08 1.18e-07 1.24e-07 1.34e-07 2.95e-08 1.4e-07 1.14e-07 1.07e-07 9.74e-08 1.05e-07 1.1e-07 1.06e-07 5.38e-08 3.43e-08 9.52e-08 3.51e-08 2.68e-08 7.52e-08 6.78e-08 6.58e-08 3.75e-08 4.68e-08 1.35e-07 3.46e-08 1.08e-08 4.92e-08 1.05e-08 1.22e-07 2e-09 4.8e-08
ENSG00000171812 COL8A2 266214 1.26e-06 1.38e-06 3.29e-07 1.27e-06 2.98e-07 5.15e-07 1.09e-06 3.31e-07 1.39e-06 3.95e-07 1.38e-06 5.98e-07 2.23e-06 3.34e-07 5.65e-07 6.7e-07 8.9e-07 6.91e-07 8.35e-07 4.61e-07 7.8e-07 1.17e-06 7.08e-07 6.25e-07 1.86e-06 3.02e-07 7.06e-07 6.88e-07 7.61e-07 9.93e-07 6.14e-07 2.46e-07 2.89e-07 5.89e-07 5.66e-07 4.54e-07 7.47e-07 3.81e-07 4.72e-07 8.88e-08 7.16e-08 1.19e-06 5.78e-07 2.06e-07 1.86e-07 3.28e-07 1.6e-07 5.95e-08 1.14e-07