logo

Genes within 1Mb (chr1:36275767:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 718294 sc-eQTL 2.19e-01 0.243 0.197 0.051 B_Activated L2
ENSG00000054116 TRAPPC3 119714 sc-eQTL 1.92e-01 0.293 0.224 0.051 B_Activated L2
ENSG00000054118 THRAP3 51335 sc-eQTL 8.20e-01 0.0493 0.216 0.051 B_Activated L2
ENSG00000092847 AGO1 405959 sc-eQTL 6.04e-01 -0.109 0.209 0.051 B_Activated L2
ENSG00000116863 ADPRHL2 186875 sc-eQTL 6.57e-01 0.0997 0.224 0.051 B_Activated L2
ENSG00000116871 MAP7D1 120188 sc-eQTL 5.67e-01 -0.117 0.204 0.051 B_Activated L2
ENSG00000116898 MRPS15 -188617 sc-eQTL 7.16e-01 -0.0812 0.223 0.051 B_Activated L2
ENSG00000126067 PSMB2 634241 sc-eQTL 3.80e-01 0.189 0.214 0.051 B_Activated L2
ENSG00000126070 AGO3 345049 sc-eQTL 1.56e-01 0.33 0.232 0.051 B_Activated L2
ENSG00000134698 AGO4 467751 sc-eQTL 4.15e-01 -0.174 0.213 0.051 B_Activated L2
ENSG00000142686 C1orf216 556873 sc-eQTL 1.08e-01 -0.305 0.188 0.051 B_Activated L2
ENSG00000142687 KIAA0319L 717817 sc-eQTL 4.29e-01 -0.177 0.223 0.051 B_Activated L2
ENSG00000181817 LSM10 -122141 sc-eQTL 6.44e-02 -0.35 0.188 0.051 B_Activated L2
ENSG00000196182 STK40 -110129 sc-eQTL 5.60e-01 0.128 0.219 0.051 B_Activated L2
ENSG00000227409 ZMYM4-AS1 909690 sc-eQTL 7.45e-01 0.0623 0.191 0.051 B_Activated L2
ENSG00000239636 AC004865.2 698038 sc-eQTL 2.58e-01 0.25 0.22 0.051 B_Activated L2
ENSG00000020129 NCDN 718294 sc-eQTL 3.37e-01 -0.201 0.209 0.05 CD4_CTL L2
ENSG00000054116 TRAPPC3 119714 sc-eQTL 1.67e-01 0.266 0.191 0.05 CD4_CTL L2
ENSG00000054118 THRAP3 51335 sc-eQTL 9.60e-01 0.00993 0.196 0.05 CD4_CTL L2
ENSG00000092847 AGO1 405959 sc-eQTL 2.48e-01 0.247 0.213 0.05 CD4_CTL L2
ENSG00000116863 ADPRHL2 186875 sc-eQTL 4.81e-01 -0.147 0.209 0.05 CD4_CTL L2
ENSG00000116871 MAP7D1 120188 sc-eQTL 5.62e-01 0.0984 0.17 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 -188617 sc-eQTL 8.03e-01 -0.0534 0.214 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 634241 sc-eQTL 8.17e-01 0.0461 0.199 0.05 CD4_CTL L2
ENSG00000126070 AGO3 345049 sc-eQTL 2.75e-01 -0.223 0.203 0.05 CD4_CTL L2
ENSG00000134698 AGO4 467751 sc-eQTL 1.65e-01 -0.261 0.188 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 556873 sc-eQTL 5.04e-01 0.129 0.192 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L 717817 sc-eQTL 7.99e-01 0.0544 0.213 0.05 CD4_CTL L2
ENSG00000142694 EVA1B -48387 sc-eQTL 4.45e-01 -0.142 0.185 0.05 CD4_CTL L2
ENSG00000181817 LSM10 -122141 sc-eQTL 5.07e-01 0.128 0.192 0.05 CD4_CTL L2
ENSG00000196182 STK40 -110129 sc-eQTL 9.08e-01 0.0223 0.192 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 909690 sc-eQTL 9.19e-01 0.02 0.196 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 698038 sc-eQTL 5.19e-01 0.126 0.195 0.05 CD4_CTL L2
ENSG00000020129 NCDN 718294 sc-eQTL 7.22e-01 0.0783 0.22 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 119714 sc-eQTL 6.74e-01 0.0833 0.198 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 51335 sc-eQTL 2.19e-02 -0.448 0.194 0.05 CD8_TEM L2
ENSG00000092847 AGO1 405959 sc-eQTL 5.94e-01 -0.11 0.206 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 186875 sc-eQTL 8.67e-01 0.0354 0.211 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 120188 sc-eQTL 3.41e-01 -0.176 0.185 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 -188617 sc-eQTL 5.49e-01 0.118 0.197 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 634241 sc-eQTL 8.52e-01 0.0352 0.188 0.05 CD8_TEM L2
ENSG00000126070 AGO3 345049 sc-eQTL 7.75e-01 0.059 0.206 0.05 CD8_TEM L2
ENSG00000134698 AGO4 467751 sc-eQTL 9.24e-01 0.0199 0.208 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 556873 sc-eQTL 3.16e-01 0.196 0.195 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L 717817 sc-eQTL 7.18e-01 -0.075 0.207 0.05 CD8_TEM L2
ENSG00000142694 EVA1B -48387 sc-eQTL 4.49e-01 -0.153 0.202 0.05 CD8_TEM L2
ENSG00000181817 LSM10 -122141 sc-eQTL 6.97e-02 -0.339 0.186 0.05 CD8_TEM L2
ENSG00000196182 STK40 -110129 sc-eQTL 8.37e-01 -0.0407 0.198 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 909690 sc-eQTL 8.26e-01 -0.0422 0.192 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 698038 sc-eQTL 2.92e-01 -0.213 0.202 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116871 MAP7D1 120188 eQTL 0.0244 0.0762 0.0338 0.0 0.0 0.0393
ENSG00000134698 AGO4 467751 eQTL 0.00264 0.069 0.0229 0.0 0.0 0.0393
ENSG00000142686 C1orf216 556873 eQTL 4.34e-09 0.278 0.0469 0.0 0.0 0.0393
ENSG00000196182 STK40 -110129 eQTL 1.46e-06 0.124 0.0255 0.024 0.0307 0.0393
ENSG00000239636 AC004865.2 698038 eQTL 0.000295 0.285 0.0783 0.00103 0.0 0.0393

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054116 \N 119714 6.08e-06 9.23e-06 7.1e-07 3.91e-06 1.7e-06 2.21e-06 8.84e-06 1.18e-06 5.86e-06 3.43e-06 8.86e-06 3.52e-06 1.14e-05 3.5e-06 1.03e-06 3.78e-06 3.72e-06 3.73e-06 1.63e-06 1.54e-06 2.78e-06 7.2e-06 4.87e-06 1.91e-06 9.12e-06 2.19e-06 2.65e-06 1.76e-06 5.11e-06 6.6e-06 3.89e-06 4.34e-07 6.68e-07 1.6e-06 2.35e-06 1.18e-06 1.03e-06 4.36e-07 9.67e-07 7.22e-07 3.06e-07 8.35e-06 6.6e-07 1.55e-07 4.19e-07 1.28e-06 1.01e-06 3.35e-07 3.38e-07
ENSG00000119535 \N -207511 3.16e-06 4.34e-06 2.46e-07 1.89e-06 4.79e-07 8.19e-07 2.31e-06 6.05e-07 2.44e-06 1.23e-06 3.21e-06 1.64e-06 5.43e-06 1.42e-06 9.21e-07 1.19e-06 1.52e-06 2.22e-06 1.33e-06 1.39e-06 1.14e-06 3.14e-06 2.54e-06 1.08e-06 4.21e-06 1.34e-06 1.31e-06 1.79e-06 1.99e-06 2.46e-06 1.94e-06 4.33e-07 4.71e-07 1.22e-06 1.63e-06 7.36e-07 8.91e-07 4.19e-07 1.09e-06 3.64e-07 2.58e-07 3.99e-06 5.2e-07 1.96e-07 3.3e-07 3.34e-07 3.78e-07 1.71e-07 2.75e-07
ENSG00000142686 C1orf216 556873 3.92e-07 3.55e-07 6.41e-08 3.92e-07 1.07e-07 1.71e-07 3.57e-07 7.12e-08 2.53e-07 1.39e-07 4.3e-07 1.91e-07 5.39e-07 1.1e-07 1.07e-07 9.48e-08 1.35e-07 2.9e-07 9.71e-08 8.25e-08 1.39e-07 2.07e-07 2.2e-07 4.81e-08 4.11e-07 1.82e-07 1.37e-07 1.77e-07 1.44e-07 2.26e-07 1.93e-07 6.31e-08 4.76e-08 1.18e-07 2.35e-07 4.86e-08 1.09e-07 6.1e-08 4.78e-08 3.01e-08 5.81e-08 3.55e-07 3.59e-08 1.55e-08 3.61e-08 8.94e-09 7.97e-08 2.2e-09 4.98e-08
ENSG00000196182 STK40 -110129 7.05e-06 9.48e-06 6.63e-07 4.37e-06 1.5e-06 3e-06 9.53e-06 1.22e-06 6.77e-06 4.14e-06 1.01e-05 4.35e-06 1.22e-05 3.81e-06 1.45e-06 3.78e-06 3.65e-06 3.89e-06 1.92e-06 1.69e-06 2.79e-06 7.65e-06 5.31e-06 2e-06 9.94e-06 2.09e-06 3.05e-06 2.3e-06 6.07e-06 7.35e-06 4.12e-06 4.44e-07 7.24e-07 1.95e-06 2.6e-06 1.17e-06 1.21e-06 5.14e-07 1.12e-06 8.05e-07 4.72e-07 9.84e-06 8.18e-07 1.69e-07 4.38e-07 1.1e-06 1.09e-06 4.43e-07 3.42e-07
ENSG00000239636 AC004865.2 698038 2.91e-07 1.67e-07 4.91e-08 2.53e-07 1.1e-07 9.31e-08 2.1e-07 5.85e-08 1.59e-07 7.6e-08 1.86e-07 1.19e-07 2.45e-07 8.66e-08 5.36e-08 7.23e-08 4.63e-08 1.77e-07 7.16e-08 6.16e-08 1.22e-07 1.31e-07 1.58e-07 3.22e-08 2.09e-07 1.23e-07 1.17e-07 1.17e-07 1.24e-07 1.05e-07 1.26e-07 7.91e-08 3.21e-08 9.3e-08 5.41e-08 3.07e-08 6.2e-08 8.17e-08 6.62e-08 8.34e-08 4.94e-08 1.62e-07 5.12e-08 2.04e-08 3.81e-08 8.31e-09 1.21e-07 1.89e-09 5.01e-08