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Genes within 1Mb (chr1:36180501:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 623028 sc-eQTL 3.66e-01 0.198 0.219 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 24448 sc-eQTL 5.13e-01 0.129 0.197 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -43931 sc-eQTL 8.22e-01 -0.0441 0.196 0.05 CD8_TEM L2
ENSG00000092847 AGO1 310693 sc-eQTL 7.44e-01 -0.0671 0.205 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 987356 sc-eQTL 9.53e-01 0.00717 0.122 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 91609 sc-eQTL 3.97e-01 0.178 0.21 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 24922 sc-eQTL 8.66e-01 -0.0312 0.185 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 -283883 sc-eQTL 9.92e-01 -0.00185 0.196 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 538975 sc-eQTL 2.93e-01 0.198 0.187 0.05 CD8_TEM L2
ENSG00000126070 AGO3 249783 sc-eQTL 7.74e-01 0.0591 0.205 0.05 CD8_TEM L2
ENSG00000134698 AGO4 372485 sc-eQTL 3.01e-01 0.215 0.207 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 461607 sc-eQTL 3.14e-01 0.196 0.194 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L 622551 sc-eQTL 2.41e-01 -0.242 0.206 0.05 CD8_TEM L2
ENSG00000142694 EVA1B -143653 sc-eQTL 3.01e-01 -0.209 0.202 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 911792 sc-eQTL 4.74e-01 -0.154 0.214 0.05 CD8_TEM L2
ENSG00000181817 LSM10 -217407 sc-eQTL 2.55e-02 0.415 0.184 0.05 CD8_TEM L2
ENSG00000196182 STK40 -205395 sc-eQTL 6.37e-01 0.0931 0.197 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 814424 sc-eQTL 3.61e-01 0.175 0.191 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 602772 sc-eQTL 4.48e-02 -0.403 0.2 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092850 TEKT2 96407 eQTL 0.00207 -0.389 0.126 0.0 0.0 0.0309
ENSG00000116560 SFPQ 987356 eQTL 0.021 0.0762 0.0329 0.0 0.0 0.0309
ENSG00000116871 MAP7D1 24922 eQTL 3.75e-05 0.156 0.0377 0.0 0.0 0.0309
ENSG00000134698 AGO4 372485 eQTL 0.00801 -0.0683 0.0257 0.0 0.0 0.0309
ENSG00000142686 C1orf216 461607 eQTL 0.000493 -0.186 0.0532 0.0 0.0 0.0309
ENSG00000171812 COL8A2 55279 eQTL 0.0476 0.133 0.0669 0.0 0.0 0.0309
ENSG00000239636 AC004865.2 602772 eQTL 0.00626 -0.241 0.0881 0.00103 0.0 0.0309

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina