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Genes within 1Mb (chr1:35990317:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 432844 sc-eQTL 1.77e-01 0.282 0.208 0.056 PB L2
ENSG00000054116 TRAPPC3 -165736 sc-eQTL 5.85e-01 0.0785 0.143 0.056 PB L2
ENSG00000054118 THRAP3 -234115 sc-eQTL 6.31e-01 0.113 0.235 0.056 PB L2
ENSG00000092847 AGO1 120509 sc-eQTL 4.74e-01 0.175 0.243 0.056 PB L2
ENSG00000116560 SFPQ 797172 sc-eQTL 5.65e-01 0.0855 0.148 0.056 PB L2
ENSG00000116863 ADPRHL2 -98575 sc-eQTL 1.04e-01 0.418 0.255 0.056 PB L2
ENSG00000116871 MAP7D1 -165262 sc-eQTL 3.22e-01 0.225 0.226 0.056 PB L2
ENSG00000116898 MRPS15 -474067 sc-eQTL 8.59e-01 -0.0249 0.139 0.056 PB L2
ENSG00000126067 PSMB2 348791 sc-eQTL 8.73e-01 -0.02 0.125 0.056 PB L2
ENSG00000126070 AGO3 59599 sc-eQTL 3.53e-01 0.25 0.268 0.056 PB L2
ENSG00000134698 AGO4 182301 sc-eQTL 3.75e-01 0.198 0.222 0.056 PB L2
ENSG00000142686 C1orf216 271423 sc-eQTL 7.17e-01 0.0791 0.217 0.056 PB L2
ENSG00000142687 KIAA0319L 432367 sc-eQTL 1.10e-01 -0.386 0.24 0.056 PB L2
ENSG00000146463 ZMYM4 721608 sc-eQTL 7.61e-01 0.0846 0.277 0.056 PB L2
ENSG00000163867 ZMYM6 958372 sc-eQTL 6.97e-01 0.108 0.278 0.056 PB L2
ENSG00000181817 LSM10 -407591 sc-eQTL 2.11e-01 -0.243 0.193 0.056 PB L2
ENSG00000196182 STK40 -395579 sc-eQTL 1.95e-01 0.277 0.212 0.056 PB L2
ENSG00000197056 ZMYM1 958145 sc-eQTL 7.14e-01 -0.0886 0.241 0.056 PB L2
ENSG00000227409 ZMYM4-AS1 624240 sc-eQTL 4.68e-01 -0.177 0.243 0.056 PB L2
ENSG00000239636 AC004865.2 412588 sc-eQTL 1.93e-01 -0.322 0.246 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092853 CLSPN 220339 eQTL 0.00681 -0.0679 0.025 0.00261 0.0 0.0643
ENSG00000116560 SFPQ 797172 eQTL 0.0257 -0.0502 0.0225 0.0 0.0 0.0643
ENSG00000116863 ADPRHL2 -98575 eQTL 0.0113 0.0725 0.0286 0.0 0.0 0.0643
ENSG00000116883 AL591845.1 -333417 eQTL 0.0116 -0.129 0.0508 0.0 0.0 0.0643
ENSG00000134698 AGO4 182301 eQTL 2.04e-08 0.0979 0.0173 0.00106 0.0 0.0643
ENSG00000142686 C1orf216 271423 eQTL 7.4e-14 0.269 0.0355 0.0 0.0 0.0643
ENSG00000142687 KIAA0319L 432367 eQTL 0.0177 0.0545 0.0229 0.0 0.0 0.0643
ENSG00000146463 ZMYM4 721350 eQTL 0.000369 0.112 0.0314 0.0 0.0 0.0643
ENSG00000239636 AC004865.2 412588 eQTL 6.13e-06 0.271 0.0597 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134698 AGO4 182301 4.34e-06 3.76e-06 5.59e-07 1.97e-06 9.11e-07 1.23e-06 2.5e-06 1.01e-06 2.79e-06 1.7e-06 3.62e-06 2e-06 5.73e-06 1.35e-06 1.03e-06 2.43e-06 1.64e-06 2.38e-06 1.56e-06 1.1e-06 1.98e-06 3.92e-06 3.44e-06 1.56e-06 4.61e-06 1.14e-06 1.88e-06 1.43e-06 3.17e-06 2.55e-06 2.04e-06 4.55e-07 6.45e-07 1.34e-06 1.84e-06 9.33e-07 9.86e-07 4.71e-07 1.31e-06 3.64e-07 2.92e-07 4.93e-06 4.62e-07 1.67e-07 3.27e-07 3.31e-07 8.08e-07 2e-07 1.76e-07
ENSG00000142686 C1orf216 271423 1.54e-06 1.29e-06 2.74e-07 1.26e-06 3.86e-07 6.44e-07 1.49e-06 4.18e-07 1.74e-06 6.9e-07 2.07e-06 9.29e-07 2.72e-06 2.82e-07 4.61e-07 9.68e-07 9.41e-07 1.09e-06 7.14e-07 4.4e-07 7.33e-07 1.92e-06 1.09e-06 5.48e-07 2.43e-06 7.53e-07 1.01e-06 9.81e-07 1.62e-06 1.16e-06 8.18e-07 2.96e-07 2.85e-07 5.73e-07 5.34e-07 5.06e-07 7.08e-07 3.63e-07 4.69e-07 2.8e-07 3.53e-07 2.5e-06 2.9e-07 1.31e-07 2.83e-07 2.16e-07 3.2e-07 4.79e-08 1.71e-07
ENSG00000142687 KIAA0319L 432367 1.09e-06 6.65e-07 1.14e-07 4.4e-07 1.12e-07 3.36e-07 6.18e-07 1.59e-07 6.18e-07 3.04e-07 9.73e-07 4.43e-07 9.97e-07 1.52e-07 3.15e-07 3.4e-07 3.69e-07 4.33e-07 2.51e-07 1.9e-07 2.5e-07 5.5e-07 4.13e-07 1.71e-07 1.14e-06 2.57e-07 4e-07 3.51e-07 4.15e-07 6.35e-07 3.68e-07 6.77e-08 5.63e-08 1.77e-07 3.52e-07 1.44e-07 1.84e-07 1.02e-07 6.66e-08 2.2e-08 1.15e-07 9.58e-07 4.53e-08 5.68e-09 1.15e-07 1.39e-08 1.18e-07 1.18e-08 4.71e-08
ENSG00000239636 AC004865.2 412588 1.26e-06 7.58e-07 1.2e-07 4.14e-07 1.04e-07 3.12e-07 6.54e-07 2e-07 7.08e-07 3.17e-07 1.1e-06 5.15e-07 1.15e-06 1.58e-07 3.35e-07 4.19e-07 4.87e-07 4.16e-07 2.79e-07 2.25e-07 2.39e-07 5.66e-07 4.66e-07 2.17e-07 1.36e-06 2.64e-07 4.68e-07 4.06e-07 4.9e-07 7.36e-07 4.02e-07 5.93e-08 4.83e-08 1.9e-07 3.71e-07 1.52e-07 2.36e-07 1.24e-07 7.41e-08 1.63e-08 1.43e-07 1.12e-06 5.03e-08 1.21e-08 1.26e-07 1.55e-08 1.45e-07 1.79e-08 6.06e-08