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Genes within 1Mb (chr1:35979356:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 421883 sc-eQTL 1.77e-01 0.282 0.208 0.056 PB L2
ENSG00000054116 TRAPPC3 -176697 sc-eQTL 5.85e-01 0.0785 0.143 0.056 PB L2
ENSG00000054118 THRAP3 -245076 sc-eQTL 6.31e-01 0.113 0.235 0.056 PB L2
ENSG00000092847 AGO1 109548 sc-eQTL 4.74e-01 0.175 0.243 0.056 PB L2
ENSG00000116560 SFPQ 786211 sc-eQTL 5.65e-01 0.0855 0.148 0.056 PB L2
ENSG00000116863 ADPRHL2 -109536 sc-eQTL 1.04e-01 0.418 0.255 0.056 PB L2
ENSG00000116871 MAP7D1 -176223 sc-eQTL 3.22e-01 0.225 0.226 0.056 PB L2
ENSG00000116898 MRPS15 -485028 sc-eQTL 8.59e-01 -0.0249 0.139 0.056 PB L2
ENSG00000126067 PSMB2 337830 sc-eQTL 8.73e-01 -0.02 0.125 0.056 PB L2
ENSG00000126070 AGO3 48638 sc-eQTL 3.53e-01 0.25 0.268 0.056 PB L2
ENSG00000134698 AGO4 171340 sc-eQTL 3.75e-01 0.198 0.222 0.056 PB L2
ENSG00000142686 C1orf216 260462 sc-eQTL 7.17e-01 0.0791 0.217 0.056 PB L2
ENSG00000142687 KIAA0319L 421406 sc-eQTL 1.10e-01 -0.386 0.24 0.056 PB L2
ENSG00000146463 ZMYM4 710647 sc-eQTL 7.61e-01 0.0846 0.277 0.056 PB L2
ENSG00000163867 ZMYM6 947411 sc-eQTL 6.97e-01 0.108 0.278 0.056 PB L2
ENSG00000181817 LSM10 -418552 sc-eQTL 2.11e-01 -0.243 0.193 0.056 PB L2
ENSG00000196182 STK40 -406540 sc-eQTL 1.95e-01 0.277 0.212 0.056 PB L2
ENSG00000197056 ZMYM1 947184 sc-eQTL 7.14e-01 -0.0886 0.241 0.056 PB L2
ENSG00000227409 ZMYM4-AS1 613279 sc-eQTL 4.68e-01 -0.177 0.243 0.056 PB L2
ENSG00000239636 AC004865.2 401627 sc-eQTL 1.93e-01 -0.322 0.246 0.056 PB L2
ENSG00000243749 TMEM35B 994003 sc-eQTL 9.75e-01 -0.00738 0.232 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092853 CLSPN 209378 eQTL 0.00649 -0.0682 0.025 0.00268 0.0 0.0643
ENSG00000116560 SFPQ 786211 eQTL 0.024 -0.0507 0.0224 0.0 0.0 0.0643
ENSG00000116863 ADPRHL2 -109536 eQTL 0.0119 0.0719 0.0285 0.0 0.0 0.0643
ENSG00000116883 AL591845.1 -344378 eQTL 0.012 -0.128 0.0507 0.0 0.0 0.0643
ENSG00000134698 AGO4 171340 eQTL 2.36e-08 0.0974 0.0173 0.00102 0.0 0.0643
ENSG00000142686 C1orf216 260462 eQTL 7.36e-14 0.269 0.0354 0.0 0.0 0.0643
ENSG00000142687 KIAA0319L 421406 eQTL 0.0174 0.0545 0.0229 0.0 0.0 0.0643
ENSG00000146463 ZMYM4 710389 eQTL 0.00036 0.112 0.0314 0.0 0.0 0.0643
ENSG00000239636 AC004865.2 401627 eQTL 5.65e-06 0.272 0.0596 0.0 0.0 0.0643
ENSG00000243749 TMEM35B 994003 eQTL 0.0252 0.0726 0.0324 0.0 0.0 0.0643

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134698 AGO4 171340 2.17e-06 2.09e-06 2.2e-07 1.28e-06 4.92e-07 6.43e-07 1.29e-06 4.04e-07 1.77e-06 6.73e-07 1.91e-06 1.32e-06 2.84e-06 6.19e-07 4.19e-07 1.1e-06 1.11e-06 1.34e-06 5.4e-07 7.64e-07 6.64e-07 1.94e-06 1.68e-06 9.14e-07 2.51e-06 9.86e-07 1.04e-06 1.07e-06 1.62e-06 1.68e-06 7.32e-07 2.84e-07 3.79e-07 8.91e-07 8.23e-07 6.18e-07 7.12e-07 3.34e-07 6.79e-07 2.29e-07 3.05e-07 2.46e-06 3.7e-07 9e-08 3.75e-07 3.22e-07 3.7e-07 1.71e-07 2.71e-07
ENSG00000142686 C1orf216 260462 1.23e-06 9.31e-07 3.02e-07 5.92e-07 2.46e-07 4.63e-07 1.28e-06 3.27e-07 1.2e-06 3.71e-07 1.41e-06 6.08e-07 1.75e-06 2.59e-07 4.48e-07 7.19e-07 8.28e-07 5.55e-07 5.29e-07 6.76e-07 3.8e-07 1.12e-06 8.6e-07 5.86e-07 1.94e-06 3.63e-07 6.85e-07 6e-07 1.11e-06 1.22e-06 5.66e-07 1.55e-07 2.29e-07 5.46e-07 4.17e-07 4.15e-07 3.67e-07 1.24e-07 3.33e-07 9.18e-08 2.68e-07 1.53e-06 5.49e-08 5.96e-09 1.65e-07 9.94e-08 2.08e-07 8.89e-08 9.32e-08
ENSG00000142687 KIAA0319L 421406 8.35e-07 4e-07 8.83e-08 3.19e-07 1.08e-07 1.64e-07 5.01e-07 8.86e-08 3.32e-07 2.06e-07 4.39e-07 3.36e-07 5.62e-07 1.07e-07 1.5e-07 1.84e-07 1.69e-07 3.39e-07 1.56e-07 1.31e-07 1.61e-07 2.96e-07 3.03e-07 1.25e-07 5.53e-07 2.33e-07 2.22e-07 1.97e-07 2.78e-07 4.1e-07 2.11e-07 7.03e-08 6.08e-08 1.19e-07 2.32e-07 6.73e-08 8.07e-08 7.75e-08 4.44e-08 6.05e-08 1.04e-07 3.66e-07 2.63e-08 7.23e-09 1.25e-07 1.81e-08 8.75e-08 3.25e-09 5.52e-08
ENSG00000239636 AC004865.2 401627 9.14e-07 4.93e-07 1.05e-07 3.48e-07 1.13e-07 1.77e-07 5.28e-07 9.91e-08 3.82e-07 2.26e-07 5.29e-07 3.65e-07 6.47e-07 1.1e-07 1.9e-07 2.08e-07 2.25e-07 3.58e-07 1.77e-07 1.43e-07 1.91e-07 3.15e-07 3.19e-07 1.44e-07 6.39e-07 2.42e-07 2.57e-07 2.19e-07 3.43e-07 4.9e-07 2.55e-07 5.69e-08 5.68e-08 1.36e-07 2.7e-07 8.75e-08 1e-07 8.33e-08 5.93e-08 3.58e-08 1.01e-07 4.35e-07 2.88e-08 1.13e-08 1.48e-07 1.59e-08 8.13e-08 1.11e-08 5.44e-08