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Genes within 1Mb (chr1:35960643:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 403170 sc-eQTL 5.78e-01 -0.122 0.219 0.05 CD4_CTL L2
ENSG00000054116 TRAPPC3 -195410 sc-eQTL 4.17e-03 -0.57 0.197 0.05 CD4_CTL L2
ENSG00000054118 THRAP3 -263789 sc-eQTL 2.35e-01 -0.242 0.204 0.05 CD4_CTL L2
ENSG00000092847 AGO1 90835 sc-eQTL 6.90e-01 -0.089 0.223 0.05 CD4_CTL L2
ENSG00000116560 SFPQ 767498 sc-eQTL 8.13e-01 -0.0346 0.146 0.05 CD4_CTL L2
ENSG00000116863 ADPRHL2 -128249 sc-eQTL 8.44e-01 -0.0431 0.218 0.05 CD4_CTL L2
ENSG00000116871 MAP7D1 -194936 sc-eQTL 1.59e-01 -0.249 0.176 0.05 CD4_CTL L2
ENSG00000116898 MRPS15 -503741 sc-eQTL 7.98e-01 -0.0573 0.223 0.05 CD4_CTL L2
ENSG00000126067 PSMB2 319117 sc-eQTL 7.34e-01 0.0708 0.208 0.05 CD4_CTL L2
ENSG00000126070 AGO3 29925 sc-eQTL 7.02e-01 -0.0814 0.213 0.05 CD4_CTL L2
ENSG00000134698 AGO4 152627 sc-eQTL 3.62e-01 -0.18 0.196 0.05 CD4_CTL L2
ENSG00000142686 C1orf216 241749 sc-eQTL 4.19e-01 0.162 0.2 0.05 CD4_CTL L2
ENSG00000142687 KIAA0319L 402693 sc-eQTL 2.66e-02 0.491 0.22 0.05 CD4_CTL L2
ENSG00000142694 EVA1B -363511 sc-eQTL 4.08e-01 -0.16 0.193 0.05 CD4_CTL L2
ENSG00000146463 ZMYM4 691934 sc-eQTL 4.72e-01 0.158 0.22 0.05 CD4_CTL L2
ENSG00000163867 ZMYM6 928698 sc-eQTL 6.96e-01 0.0881 0.225 0.05 CD4_CTL L2
ENSG00000181817 LSM10 -437265 sc-eQTL 3.76e-01 -0.178 0.2 0.05 CD4_CTL L2
ENSG00000196182 STK40 -425253 sc-eQTL 5.93e-01 -0.107 0.2 0.05 CD4_CTL L2
ENSG00000197056 ZMYM1 928471 sc-eQTL 8.67e-01 0.0382 0.227 0.05 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 594566 sc-eQTL 7.76e-02 0.36 0.203 0.05 CD4_CTL L2
ENSG00000239636 AC004865.2 382914 sc-eQTL 7.62e-01 0.0617 0.204 0.05 CD4_CTL L2
ENSG00000243749 TMEM35B 975290 sc-eQTL 4.89e-01 0.119 0.172 0.05 CD4_CTL L2
ENSG00000020129 NCDN 403170 sc-eQTL 8.19e-01 -0.0524 0.229 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 -195410 sc-eQTL 2.63e-01 0.23 0.205 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -263789 sc-eQTL 1.12e-01 -0.325 0.204 0.05 CD8_TEM L2
ENSG00000092847 AGO1 90835 sc-eQTL 1.52e-01 0.307 0.213 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 767498 sc-eQTL 6.57e-01 -0.0565 0.127 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 -128249 sc-eQTL 4.45e-01 -0.168 0.219 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 -194936 sc-eQTL 2.16e-01 0.239 0.192 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 -503741 sc-eQTL 4.52e-01 0.155 0.205 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 319117 sc-eQTL 4.69e-01 -0.142 0.196 0.05 CD8_TEM L2
ENSG00000126070 AGO3 29925 sc-eQTL 9.52e-01 -0.0131 0.215 0.05 CD8_TEM L2
ENSG00000134698 AGO4 152627 sc-eQTL 3.92e-01 -0.186 0.216 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 241749 sc-eQTL 1.72e-01 0.278 0.203 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L 402693 sc-eQTL 3.91e-01 -0.185 0.216 0.05 CD8_TEM L2
ENSG00000142694 EVA1B -363511 sc-eQTL 2.00e-01 -0.271 0.21 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 691934 sc-eQTL 1.70e-01 -0.308 0.223 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 928698 sc-eQTL 7.47e-01 0.0715 0.221 0.05 CD8_TEM L2
ENSG00000181817 LSM10 -437265 sc-eQTL 9.65e-02 -0.324 0.194 0.05 CD8_TEM L2
ENSG00000196182 STK40 -425253 sc-eQTL 6.51e-01 0.0933 0.206 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 928471 sc-eQTL 1.68e-02 0.49 0.203 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 594566 sc-eQTL 5.72e-01 0.113 0.2 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 382914 sc-eQTL 8.53e-01 -0.0392 0.211 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B 975290 sc-eQTL 3.15e-01 0.159 0.158 0.05 CD8_TEM L2
ENSG00000020129 NCDN 403170 sc-eQTL 7.75e-02 0.378 0.213 0.051 cDC L2
ENSG00000054116 TRAPPC3 -195410 sc-eQTL 6.06e-01 -0.101 0.195 0.051 cDC L2
ENSG00000054118 THRAP3 -263789 sc-eQTL 8.01e-01 0.0475 0.188 0.051 cDC L2
ENSG00000092847 AGO1 90835 sc-eQTL 5.05e-01 -0.142 0.212 0.051 cDC L2
ENSG00000092853 CLSPN 190665 sc-eQTL 7.87e-01 -0.0517 0.191 0.051 cDC L2
ENSG00000116560 SFPQ 767498 sc-eQTL 9.67e-01 0.00555 0.135 0.051 cDC L2
ENSG00000116863 ADPRHL2 -128249 sc-eQTL 9.96e-01 0.000988 0.196 0.051 cDC L2
ENSG00000116871 MAP7D1 -194936 sc-eQTL 1.81e-01 0.223 0.166 0.051 cDC L2
ENSG00000116898 MRPS15 -503741 sc-eQTL 1.05e-01 -0.307 0.189 0.051 cDC L2
ENSG00000119535 CSF3R -522635 sc-eQTL 2.45e-01 0.178 0.152 0.051 cDC L2
ENSG00000126067 PSMB2 319117 sc-eQTL 7.94e-01 0.0473 0.181 0.051 cDC L2
ENSG00000126070 AGO3 29925 sc-eQTL 7.08e-01 -0.077 0.205 0.051 cDC L2
ENSG00000134698 AGO4 152627 sc-eQTL 3.28e-01 0.198 0.201 0.051 cDC L2
ENSG00000142686 C1orf216 241749 sc-eQTL 8.84e-01 -0.0279 0.192 0.051 cDC L2
ENSG00000142687 KIAA0319L 402693 sc-eQTL 8.04e-01 -0.0518 0.209 0.051 cDC L2
ENSG00000142694 EVA1B -363511 sc-eQTL 7.74e-01 -0.0497 0.173 0.051 cDC L2
ENSG00000146463 ZMYM4 691934 sc-eQTL 9.15e-02 0.311 0.183 0.051 cDC L2
ENSG00000163867 ZMYM6 928698 sc-eQTL 2.10e-01 0.265 0.211 0.051 cDC L2
ENSG00000171812 COL8A2 -164579 sc-eQTL 1.41e-01 -0.3 0.203 0.051 cDC L2
ENSG00000181817 LSM10 -437265 sc-eQTL 6.45e-01 -0.0913 0.198 0.051 cDC L2
ENSG00000196182 STK40 -425253 sc-eQTL 9.03e-01 -0.0269 0.22 0.051 cDC L2
ENSG00000197056 ZMYM1 928471 sc-eQTL 5.34e-01 -0.125 0.2 0.051 cDC L2
ENSG00000214193 SH3D21 -345725 sc-eQTL 4.86e-01 0.132 0.189 0.051 cDC L2
ENSG00000227409 ZMYM4-AS1 594566 sc-eQTL 6.75e-01 0.0836 0.199 0.051 cDC L2
ENSG00000239636 AC004865.2 382914 sc-eQTL 9.35e-01 -0.0172 0.21 0.051 cDC L2
ENSG00000243749 TMEM35B 975290 sc-eQTL 6.06e-01 -0.102 0.198 0.051 cDC L2
ENSG00000020129 NCDN 403170 sc-eQTL 2.88e-01 0.236 0.222 0.051 pDC L2
ENSG00000054116 TRAPPC3 -195410 sc-eQTL 8.29e-01 0.0484 0.224 0.051 pDC L2
ENSG00000054118 THRAP3 -263789 sc-eQTL 7.91e-01 -0.0534 0.201 0.051 pDC L2
ENSG00000092847 AGO1 90835 sc-eQTL 1.43e-01 0.333 0.227 0.051 pDC L2
ENSG00000092853 CLSPN 190665 sc-eQTL 3.28e-01 -0.162 0.165 0.051 pDC L2
ENSG00000116560 SFPQ 767498 sc-eQTL 3.42e-01 -0.136 0.143 0.051 pDC L2
ENSG00000116863 ADPRHL2 -128249 sc-eQTL 3.15e-01 -0.218 0.216 0.051 pDC L2
ENSG00000116871 MAP7D1 -194936 sc-eQTL 9.87e-01 0.00328 0.196 0.051 pDC L2
ENSG00000116898 MRPS15 -503741 sc-eQTL 7.35e-01 -0.0726 0.214 0.051 pDC L2
ENSG00000119535 CSF3R -522635 sc-eQTL 5.86e-01 -0.0736 0.135 0.051 pDC L2
ENSG00000126067 PSMB2 319117 sc-eQTL 6.94e-01 0.077 0.195 0.051 pDC L2
ENSG00000126070 AGO3 29925 sc-eQTL 1.12e-01 0.331 0.207 0.051 pDC L2
ENSG00000134698 AGO4 152627 sc-eQTL 7.85e-01 -0.0559 0.204 0.051 pDC L2
ENSG00000142686 C1orf216 241749 sc-eQTL 1.40e-02 -0.429 0.173 0.051 pDC L2
ENSG00000142687 KIAA0319L 402693 sc-eQTL 4.14e-01 -0.197 0.24 0.051 pDC L2
ENSG00000142694 EVA1B -363511 sc-eQTL 6.58e-01 -0.0747 0.168 0.051 pDC L2
ENSG00000146463 ZMYM4 691934 sc-eQTL 2.61e-01 0.245 0.217 0.051 pDC L2
ENSG00000163867 ZMYM6 928698 sc-eQTL 7.02e-01 0.0778 0.203 0.051 pDC L2
ENSG00000171812 COL8A2 -164579 sc-eQTL 4.26e-01 -0.171 0.214 0.051 pDC L2
ENSG00000181817 LSM10 -437265 sc-eQTL 8.69e-01 -0.0341 0.206 0.051 pDC L2
ENSG00000196182 STK40 -425253 sc-eQTL 1.78e-01 0.29 0.215 0.051 pDC L2
ENSG00000197056 ZMYM1 928471 sc-eQTL 7.39e-01 0.0698 0.21 0.051 pDC L2
ENSG00000214193 SH3D21 -345725 sc-eQTL 3.17e-01 0.206 0.205 0.051 pDC L2
ENSG00000227409 ZMYM4-AS1 594566 sc-eQTL 1.85e-01 0.279 0.21 0.051 pDC L2
ENSG00000239636 AC004865.2 382914 sc-eQTL 5.05e-02 -0.442 0.224 0.051 pDC L2
ENSG00000243749 TMEM35B 975290 sc-eQTL 9.26e-02 0.312 0.184 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 -195410 eQTL 0.0372 -0.0562 0.0269 0.0 0.0 0.0535
ENSG00000092847 AGO1 90835 eQTL 0.0127 0.1 0.0402 0.00223 0.0 0.0535
ENSG00000092850 TEKT2 -123451 eQTL 6.8e-09 -0.589 0.101 0.0 0.0 0.0535
ENSG00000116863 ADPRHL2 -128249 eQTL 0.0403 -0.0697 0.034 0.0 0.0 0.0535
ENSG00000116871 MAP7D1 -194936 eQTL 0.00879 0.0805 0.0307 0.0 0.0 0.0535
ENSG00000142686 C1orf216 241749 eQTL 0.00127 -0.139 0.0431 0.0 0.0 0.0535
ENSG00000171812 COL8A2 -164579 eQTL 3.71e-06 0.25 0.0537 0.0 0.0 0.0535
ENSG00000181817 LSM10 -437265 eQTL 0.877 0.00469 0.0303 0.00279 0.0 0.0535
ENSG00000239636 AC004865.2 382914 eQTL 1.61e-10 -0.453 0.0701 0.0 0.0 0.0535

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000092850 TEKT2 -123451 4.39e-06 4.63e-06 8.72e-07 2.59e-06 1.32e-06 1.39e-06 4e-06 9.6e-07 4.53e-06 2.33e-06 4.52e-06 3.46e-06 7.77e-06 2.17e-06 1.35e-06 3.03e-06 2.09e-06 3.05e-06 1.44e-06 1e-06 2.69e-06 4.49e-06 3.63e-06 1.43e-06 5.3e-06 1.72e-06 2.55e-06 1.72e-06 4.34e-06 4.02e-06 2.53e-06 5.58e-07 5.9e-07 1.48e-06 2.04e-06 9.04e-07 9.46e-07 4.07e-07 8.69e-07 4.08e-07 6.35e-07 5.22e-06 3.83e-07 1.79e-07 5.64e-07 6.92e-07 9.63e-07 4.27e-07 3.89e-07
ENSG00000142686 C1orf216 241749 1.37e-06 1.31e-06 3.06e-07 1.3e-06 3.79e-07 6.3e-07 1.52e-06 4.44e-07 1.7e-06 6.69e-07 2.04e-06 9.29e-07 2.53e-06 3.24e-07 4.58e-07 9.72e-07 1.02e-06 1.06e-06 7.08e-07 4.38e-07 7.58e-07 1.89e-06 1.12e-06 5.94e-07 2.47e-06 7.75e-07 1.02e-06 8.92e-07 1.6e-06 1.34e-06 8.1e-07 2.56e-07 3.32e-07 5.5e-07 5.46e-07 5.08e-07 7.58e-07 3.58e-07 5.37e-07 2.43e-07 3.4e-07 1.61e-06 3.43e-07 8.96e-08 2.99e-07 2.13e-07 2.59e-07 1.39e-07 2.4e-07
ENSG00000171812 COL8A2 -164579 3.06e-06 2.75e-06 4.65e-07 2e-06 6.82e-07 7.84e-07 2.28e-06 8.5e-07 2.27e-06 1.2e-06 2.49e-06 1.63e-06 3.83e-06 1.4e-06 9.62e-07 1.84e-06 1.55e-06 2.2e-06 1.42e-06 1.39e-06 1.41e-06 3.15e-06 2.67e-06 1.56e-06 4.08e-06 1.22e-06 1.52e-06 1.81e-06 2.66e-06 2.37e-06 2.03e-06 4.69e-07 6.21e-07 1.32e-06 1.47e-06 9.85e-07 8.57e-07 3.61e-07 1.26e-06 3.46e-07 2.8e-07 3.35e-06 6.38e-07 1.89e-07 3.45e-07 3.57e-07 8.68e-07 2.02e-07 1.58e-07
ENSG00000239636 AC004865.2 382914 1.09e-06 6.99e-07 1.46e-07 4.39e-07 1.04e-07 3.39e-07 6.33e-07 2.26e-07 6.62e-07 3.22e-07 9.47e-07 5.22e-07 1.02e-06 1.59e-07 3.16e-07 3.4e-07 5.63e-07 4.39e-07 2.88e-07 2.27e-07 2.42e-07 5.18e-07 4.59e-07 2.95e-07 1.16e-06 2.53e-07 4.27e-07 3.24e-07 5.42e-07 8.36e-07 3.79e-07 4.31e-08 9.26e-08 2.06e-07 3.8e-07 1.8e-07 1.91e-07 1.21e-07 1.12e-07 8.51e-09 1.22e-07 7.2e-07 6.68e-08 1.07e-08 1.99e-07 3.5e-08 1.45e-07 4.41e-08 5.26e-08