Genes within 1Mb (chr1:35936603:T:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 379130 sc-eQTL 1.77e-01 0.282 0.208 0.056 PB L2
ENSG00000054116 TRAPPC3 -219450 sc-eQTL 5.85e-01 0.0785 0.143 0.056 PB L2
ENSG00000054118 THRAP3 -287829 sc-eQTL 6.31e-01 0.113 0.235 0.056 PB L2
ENSG00000092847 AGO1 66795 sc-eQTL 4.74e-01 0.175 0.243 0.056 PB L2
ENSG00000116560 SFPQ 743458 sc-eQTL 5.65e-01 0.0855 0.148 0.056 PB L2
ENSG00000116863 ADPRHL2 -152289 sc-eQTL 1.04e-01 0.418 0.255 0.056 PB L2
ENSG00000116871 MAP7D1 -218976 sc-eQTL 3.22e-01 0.225 0.226 0.056 PB L2
ENSG00000116898 MRPS15 -527781 sc-eQTL 8.59e-01 -0.0249 0.139 0.056 PB L2
ENSG00000126067 PSMB2 295077 sc-eQTL 8.73e-01 -0.02 0.125 0.056 PB L2
ENSG00000126070 AGO3 5885 sc-eQTL 3.53e-01 0.25 0.268 0.056 PB L2
ENSG00000134698 AGO4 128587 sc-eQTL 3.75e-01 0.198 0.222 0.056 PB L2
ENSG00000142686 C1orf216 217709 sc-eQTL 7.17e-01 0.0791 0.217 0.056 PB L2
ENSG00000142687 KIAA0319L 378653 sc-eQTL 1.10e-01 -0.386 0.24 0.056 PB L2
ENSG00000146463 ZMYM4 667894 sc-eQTL 7.61e-01 0.0846 0.277 0.056 PB L2
ENSG00000163867 ZMYM6 904658 sc-eQTL 6.97e-01 0.108 0.278 0.056 PB L2
ENSG00000181817 LSM10 -461305 sc-eQTL 2.11e-01 -0.243 0.193 0.056 PB L2
ENSG00000196182 STK40 -449293 sc-eQTL 1.95e-01 0.277 0.212 0.056 PB L2
ENSG00000197056 ZMYM1 904431 sc-eQTL 7.14e-01 -0.0886 0.241 0.056 PB L2
ENSG00000227409 ZMYM4-AS1 570526 sc-eQTL 4.68e-01 -0.177 0.243 0.056 PB L2
ENSG00000239636 AC004865.2 358874 sc-eQTL 1.93e-01 -0.322 0.246 0.056 PB L2
ENSG00000243749 TMEM35B 951250 sc-eQTL 9.75e-01 -0.00738 0.232 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092853 CLSPN 166625 eQTL 0.00433 -0.0712 0.0249 0.00341 0.00109 0.0653
ENSG00000116560 SFPQ 743458 eQTL 0.0257 -0.05 0.0224 0.0 0.0 0.0653
ENSG00000116863 ADPRHL2 -152289 eQTL 0.0158 0.0687 0.0284 0.0 0.0 0.0653
ENSG00000116883 AL591845.1 -387131 eQTL 0.015 -0.123 0.0506 0.0 0.0 0.0653
ENSG00000126067 PSMB2 295077 eQTL 0.0381 -0.0482 0.0232 0.0 0.0 0.0653
ENSG00000134698 AGO4 128587 eQTL 2.29e-08 0.0971 0.0172 0.00101 0.0 0.0653
ENSG00000142686 C1orf216 217709 eQTL 7.96e-14 0.268 0.0353 0.0 0.0 0.0653
ENSG00000142687 KIAA0319L 378653 eQTL 0.0118 0.0576 0.0228 0.0 0.0 0.0653
ENSG00000146463 ZMYM4 667636 eQTL 0.000664 0.107 0.0313 0.0 0.0 0.0653
ENSG00000239636 AC004865.2 358874 eQTL 4.54e-06 0.274 0.0593 0.0 0.0 0.0653
ENSG00000243749 TMEM35B 951250 eQTL 0.0221 0.074 0.0323 0.0 0.0 0.0653


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116819 \N 363289 1.24e-06 9.2e-07 3.41e-07 1.15e-06 2.93e-07 5.98e-07 1.59e-06 3.54e-07 1.29e-06 4.52e-07 1.74e-06 6.58e-07 2.04e-06 2.79e-07 5.56e-07 8.27e-07 8.42e-07 6.45e-07 7.7e-07 6.76e-07 6.13e-07 1.36e-06 8.76e-07 6.42e-07 2.24e-06 4.11e-07 8.73e-07 7.59e-07 1.3e-06 1.36e-06 6.29e-07 1.55e-07 2.15e-07 6.38e-07 5.34e-07 4.5e-07 5.76e-07 2.24e-07 4.04e-07 3.24e-07 2.82e-07 1.49e-06 9.55e-08 5.72e-08 1.81e-07 1.38e-07 2.33e-07 3.7e-08 9.42e-08
ENSG00000134698 AGO4 128587 5.59e-06 5.79e-06 7.11e-07 3.6e-06 1.62e-06 1.59e-06 6.18e-06 9.98e-07 4.95e-06 2.99e-06 6.97e-06 3.37e-06 8.47e-06 1.89e-06 1.21e-06 3.85e-06 1.97e-06 3.79e-06 1.61e-06 1.14e-06 3.04e-06 4.83e-06 4.63e-06 1.42e-06 8.88e-06 1.97e-06 2.34e-06 1.77e-06 4.47e-06 5e-06 2.64e-06 5.6e-07 5.51e-07 1.55e-06 2.03e-06 1.04e-06 9.78e-07 4.58e-07 8.5e-07 5.04e-07 5.21e-07 7.03e-06 5.26e-07 1.67e-07 4.14e-07 9.82e-07 1.09e-06 4.43e-07 2.55e-07
ENSG00000142686 C1orf216 217709 3.55e-06 3.17e-06 3.61e-07 1.89e-06 4.63e-07 8.19e-07 2.25e-06 6.43e-07 1.93e-06 1.21e-06 2.77e-06 1.65e-06 3.71e-06 1.43e-06 9.17e-07 1.62e-06 1.55e-06 2.25e-06 1.13e-06 1.22e-06 1.14e-06 3.09e-06 2.58e-06 1.05e-06 4.09e-06 1.35e-06 1.49e-06 1.79e-06 2.56e-06 2.23e-06 1.9e-06 2.51e-07 5.18e-07 1.24e-06 1.67e-06 9.46e-07 8.12e-07 4.58e-07 1.16e-06 3.79e-07 1.96e-07 3.37e-06 5.92e-07 1.99e-07 3.57e-07 3.13e-07 8e-07 2.46e-07 2.8e-07
ENSG00000142687 KIAA0319L 378653 1.33e-06 9.52e-07 3.32e-07 1.02e-06 2.66e-07 6.38e-07 1.38e-06 3.49e-07 1.2e-06 4.28e-07 1.49e-06 6.16e-07 2e-06 2.76e-07 4.91e-07 7.19e-07 8e-07 5.82e-07 6.96e-07 6.76e-07 4.99e-07 1.22e-06 9.21e-07 5.82e-07 2.23e-06 3.91e-07 7.66e-07 7.19e-07 1.23e-06 1.25e-06 5.72e-07 9.48e-08 2.16e-07 5.18e-07 5.38e-07 4.47e-07 5.17e-07 2.03e-07 3.73e-07 2.49e-07 2.87e-07 1.59e-06 5.07e-08 4.23e-08 1.64e-07 1.3e-07 2.22e-07 5.35e-08 8.09e-08
ENSG00000239636 AC004865.2 358874 1.21e-06 9.79e-07 3.26e-07 1.19e-06 2.98e-07 5.99e-07 1.63e-06 3.52e-07 1.38e-06 4.7e-07 1.79e-06 6.61e-07 2.01e-06 2.87e-07 5.23e-07 7.95e-07 9.08e-07 6.56e-07 8.01e-07 6.86e-07 6.51e-07 1.42e-06 8.68e-07 6.4e-07 2.23e-06 4.33e-07 9.02e-07 7.14e-07 1.31e-06 1.31e-06 6.76e-07 1.56e-07 2.19e-07 6.83e-07 5.42e-07 4.81e-07 5.93e-07 2.38e-07 4.2e-07 3.02e-07 2.84e-07 1.46e-06 1.08e-07 6.46e-08 1.84e-07 1.2e-07 2.37e-07 3.75e-08 9.5e-08