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Genes within 1Mb (chr1:35892700:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 335227 sc-eQTL 7.36e-01 0.0822 0.244 0.055 gdT L2
ENSG00000054116 TRAPPC3 -263353 sc-eQTL 9.28e-01 0.0191 0.212 0.055 gdT L2
ENSG00000054118 THRAP3 -331732 sc-eQTL 8.99e-01 0.0314 0.246 0.055 gdT L2
ENSG00000092847 AGO1 22892 sc-eQTL 1.05e-02 0.656 0.253 0.055 gdT L2
ENSG00000092853 CLSPN 122722 sc-eQTL 4.82e-01 -0.143 0.202 0.055 gdT L2
ENSG00000116544 DLGAP3 963050 sc-eQTL 7.25e-01 0.0836 0.237 0.055 gdT L2
ENSG00000116560 SFPQ 699555 sc-eQTL 5.08e-01 -0.103 0.156 0.055 gdT L2
ENSG00000116863 ADPRHL2 -196192 sc-eQTL 3.59e-01 -0.219 0.238 0.055 gdT L2
ENSG00000116871 MAP7D1 -262879 sc-eQTL 6.30e-02 0.376 0.201 0.055 gdT L2
ENSG00000116898 MRPS15 -571684 sc-eQTL 8.11e-01 0.0594 0.248 0.055 gdT L2
ENSG00000126067 PSMB2 251174 sc-eQTL 3.92e-01 -0.187 0.218 0.055 gdT L2
ENSG00000126070 AGO3 -38018 sc-eQTL 6.01e-01 0.124 0.237 0.055 gdT L2
ENSG00000134698 AGO4 84684 sc-eQTL 6.56e-01 0.103 0.232 0.055 gdT L2
ENSG00000142686 C1orf216 173806 sc-eQTL 6.73e-01 -0.0995 0.235 0.055 gdT L2
ENSG00000142687 KIAA0319L 334750 sc-eQTL 5.17e-01 0.153 0.236 0.055 gdT L2
ENSG00000142694 EVA1B -431454 sc-eQTL 3.39e-01 -0.214 0.223 0.055 gdT L2
ENSG00000146463 ZMYM4 623991 sc-eQTL 2.51e-01 -0.262 0.227 0.055 gdT L2
ENSG00000163867 ZMYM6 860755 sc-eQTL 1.84e-01 -0.339 0.254 0.055 gdT L2
ENSG00000181817 LSM10 -505208 sc-eQTL 2.46e-01 -0.263 0.226 0.055 gdT L2
ENSG00000196182 STK40 -493196 sc-eQTL 1.73e-01 -0.293 0.214 0.055 gdT L2
ENSG00000197056 ZMYM1 860528 sc-eQTL 2.03e-01 -0.292 0.228 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 526623 sc-eQTL 5.34e-01 -0.136 0.218 0.055 gdT L2
ENSG00000239636 AC004865.2 314971 sc-eQTL 6.28e-01 -0.103 0.212 0.055 gdT L2
ENSG00000243749 TMEM35B 907347 sc-eQTL 4.20e-02 -0.367 0.179 0.055 gdT L2
ENSG00000020129 NCDN 335227 sc-eQTL 6.77e-01 0.0934 0.224 0.051 pDC L2
ENSG00000054116 TRAPPC3 -263353 sc-eQTL 1.48e-01 -0.326 0.225 0.051 pDC L2
ENSG00000054118 THRAP3 -331732 sc-eQTL 2.85e-01 0.217 0.202 0.051 pDC L2
ENSG00000092847 AGO1 22892 sc-eQTL 4.57e-01 0.171 0.23 0.051 pDC L2
ENSG00000092853 CLSPN 122722 sc-eQTL 4.80e-01 0.118 0.166 0.051 pDC L2
ENSG00000116544 DLGAP3 963050 sc-eQTL 9.30e-01 -0.0195 0.22 0.051 pDC L2
ENSG00000116560 SFPQ 699555 sc-eQTL 7.42e-01 0.0476 0.144 0.051 pDC L2
ENSG00000116863 ADPRHL2 -196192 sc-eQTL 2.43e-01 0.256 0.218 0.051 pDC L2
ENSG00000116871 MAP7D1 -262879 sc-eQTL 7.49e-01 0.0635 0.198 0.051 pDC L2
ENSG00000116898 MRPS15 -571684 sc-eQTL 8.75e-01 -0.034 0.216 0.051 pDC L2
ENSG00000119535 CSF3R -590578 sc-eQTL 9.74e-01 -0.00439 0.136 0.051 pDC L2
ENSG00000126067 PSMB2 251174 sc-eQTL 9.72e-01 0.0069 0.197 0.051 pDC L2
ENSG00000126070 AGO3 -38018 sc-eQTL 7.86e-01 0.0573 0.21 0.051 pDC L2
ENSG00000134698 AGO4 84684 sc-eQTL 8.98e-01 0.0264 0.206 0.051 pDC L2
ENSG00000142686 C1orf216 173806 sc-eQTL 8.75e-01 0.028 0.178 0.051 pDC L2
ENSG00000142687 KIAA0319L 334750 sc-eQTL 4.43e-01 0.186 0.242 0.051 pDC L2
ENSG00000142694 EVA1B -431454 sc-eQTL 8.92e-02 -0.288 0.168 0.051 pDC L2
ENSG00000146463 ZMYM4 623991 sc-eQTL 3.67e-01 -0.198 0.219 0.051 pDC L2
ENSG00000163867 ZMYM6 860755 sc-eQTL 1.44e-01 0.298 0.203 0.051 pDC L2
ENSG00000171812 COL8A2 -232522 sc-eQTL 3.88e-01 -0.187 0.216 0.051 pDC L2
ENSG00000181817 LSM10 -505208 sc-eQTL 8.95e-01 -0.0274 0.207 0.051 pDC L2
ENSG00000196182 STK40 -493196 sc-eQTL 8.12e-01 -0.0517 0.218 0.051 pDC L2
ENSG00000197056 ZMYM1 860528 sc-eQTL 7.57e-01 -0.0655 0.211 0.051 pDC L2
ENSG00000214193 SH3D21 -413668 sc-eQTL 8.74e-01 -0.033 0.207 0.051 pDC L2
ENSG00000227409 ZMYM4-AS1 526623 sc-eQTL 5.21e-01 -0.137 0.212 0.051 pDC L2
ENSG00000239636 AC004865.2 314971 sc-eQTL 6.56e-01 0.102 0.229 0.051 pDC L2
ENSG00000243749 TMEM35B 907347 sc-eQTL 7.21e-01 -0.0672 0.187 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000092847 AGO1 22892 eQTL 0.0456 0.0972 0.0485 0.0013 0.0 0.0353
ENSG00000092850 TEKT2 -191394 eQTL 2.2e-05 -0.522 0.123 0.0 0.0 0.0353
ENSG00000116871 MAP7D1 -262879 eQTL 0.0455 0.0743 0.0371 0.0 0.0 0.0353
ENSG00000163867 ZMYM6 860755 eQTL 0.0376 0.0857 0.0412 0.0 0.0 0.0353
ENSG00000181817 LSM10 -505208 eQTL 0.0064 0.0996 0.0365 0.00215 0.0 0.0353
ENSG00000214193 SH3D21 -413687 eQTL 0.0947 -0.123 0.0736 0.00103 0.0 0.0353
ENSG00000239636 AC004865.2 314971 eQTL 0.00942 -0.224 0.0862 0.0 0.0 0.0353
ENSG00000243749 TMEM35B 907347 eQTL 0.00947 -0.121 0.0465 0.0 0.0 0.0353

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000092850 TEKT2 -191394 2.96e-06 4.63e-06 2.74e-07 1.96e-06 6.39e-07 1.19e-06 2.45e-06 6.3e-07 2.98e-06 1.44e-06 3.36e-06 2.24e-06 5.72e-06 1.24e-06 8.88e-07 1.15e-06 1.22e-06 2.12e-06 1.61e-06 1.13e-06 1.8e-06 3.43e-06 2e-06 1.07e-06 4.06e-06 1.23e-06 1.21e-06 1.81e-06 2.07e-06 2.65e-06 2.02e-06 4.33e-07 5.05e-07 1.8e-06 1.27e-06 9.75e-07 9.08e-07 4.75e-07 1.31e-06 3.8e-07 2.88e-07 4.34e-06 3.78e-07 1.85e-07 2.73e-07 3.42e-07 4.02e-07 1.98e-07 5.6e-07
ENSG00000171812 \N -232522 1.54e-06 2.61e-06 3.3e-07 1.57e-06 4.9e-07 7.99e-07 1.32e-06 4.18e-07 1.74e-06 7.42e-07 2.02e-06 1.35e-06 3.5e-06 1.1e-06 3.86e-07 9.85e-07 1.16e-06 1.42e-06 5.95e-07 4.83e-07 9.18e-07 2.17e-06 1.1e-06 6.22e-07 2.39e-06 9.37e-07 9.31e-07 1.05e-06 1.69e-06 1.63e-06 1.19e-06 2.46e-07 3.47e-07 1.25e-06 7.37e-07 5.92e-07 8.32e-07 3.45e-07 6.97e-07 3.98e-07 1.67e-07 2.92e-06 5.58e-07 1.63e-07 3.17e-07 2.94e-07 2.37e-07 2.52e-07 6.22e-07
ENSG00000181817 LSM10 -505208 4.89e-07 8.34e-07 5.72e-08 3.99e-07 1.07e-07 3.08e-07 5.13e-07 7.79e-08 4.43e-07 2.14e-07 8.28e-07 4.55e-07 7.71e-07 1.23e-07 1.45e-07 1.13e-07 1.38e-07 3.79e-07 2.25e-07 8e-08 2.09e-07 3.1e-07 2.33e-07 9.01e-08 5.75e-07 2.46e-07 1.33e-07 1.68e-07 2.11e-07 5.17e-07 2.54e-07 4.29e-08 5.73e-08 2.33e-07 2.61e-07 7.86e-08 1.64e-07 7.53e-08 4.23e-08 2.2e-08 5.43e-08 4.42e-07 5.38e-08 1.66e-07 6.59e-08 1.61e-08 8.67e-08 3.3e-09 2.83e-07
ENSG00000196182 \N -493196 5.37e-07 8.23e-07 5.93e-08 4.26e-07 1.06e-07 3.32e-07 5.28e-07 8.17e-08 5.02e-07 2.26e-07 9.07e-07 4.94e-07 8.34e-07 1.41e-07 1.51e-07 1.14e-07 1.69e-07 3.82e-07 2.6e-07 8.87e-08 2.35e-07 3.34e-07 2.48e-07 1.04e-07 6.18e-07 2.42e-07 1.31e-07 1.69e-07 2.19e-07 5.56e-07 2.73e-07 5.32e-08 5.48e-08 2.77e-07 2.82e-07 7.68e-08 1.86e-07 7.93e-08 4e-08 1.56e-08 4.69e-08 4.82e-07 5.09e-08 1.67e-07 8.06e-08 1.27e-08 7.83e-08 7.25e-09 2.79e-07
ENSG00000241014 \N 913994 2.67e-07 1.7e-07 3.69e-08 2.05e-07 1.01e-07 8.45e-08 1.6e-07 5.4e-08 1.45e-07 5.67e-08 1.59e-07 1.22e-07 1.53e-07 7.37e-08 6.25e-08 7.37e-08 4.17e-08 1.4e-07 7.12e-08 4.07e-08 1.25e-07 1.24e-07 1.39e-07 3.23e-08 1.55e-07 1.26e-07 1.11e-07 9.36e-08 1.09e-07 1.05e-07 1.02e-07 3.96e-08 3.66e-08 9.58e-08 6.34e-08 3.04e-08 4.06e-08 9.36e-08 6.54e-08 3.67e-08 3.61e-08 1.4e-07 5.2e-08 1.92e-08 5.43e-08 1.86e-08 1.26e-07 1.88e-09 5.56e-08