Genes within 1Mb (chr1:35678630:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 121157 sc-eQTL 7.43e-01 -0.0787 0.24 0.055 gdT L2
ENSG00000054116 TRAPPC3 -477423 sc-eQTL 1.58e-02 -0.499 0.204 0.055 gdT L2
ENSG00000054118 THRAP3 -545802 sc-eQTL 8.70e-01 -0.0399 0.243 0.055 gdT L2
ENSG00000092847 AGO1 -191178 sc-eQTL 4.72e-01 0.183 0.254 0.055 gdT L2
ENSG00000092853 CLSPN -91348 sc-eQTL 4.06e-01 -0.166 0.199 0.055 gdT L2
ENSG00000116544 DLGAP3 748980 sc-eQTL 2.37e-01 0.275 0.232 0.055 gdT L2
ENSG00000116560 SFPQ 485485 sc-eQTL 9.13e-01 -0.0168 0.154 0.055 gdT L2
ENSG00000116863 ADPRHL2 -410262 sc-eQTL 3.38e-01 -0.225 0.234 0.055 gdT L2
ENSG00000116871 MAP7D1 -476949 sc-eQTL 8.50e-01 0.0378 0.2 0.055 gdT L2
ENSG00000116898 MRPS15 -785754 sc-eQTL 2.30e-01 0.293 0.243 0.055 gdT L2
ENSG00000126067 PSMB2 37104 sc-eQTL 3.32e-01 0.209 0.215 0.055 gdT L2
ENSG00000126070 AGO3 -252088 sc-eQTL 1.54e-01 0.332 0.232 0.055 gdT L2
ENSG00000134698 AGO4 -129386 sc-eQTL 8.30e-01 -0.0489 0.228 0.055 gdT L2
ENSG00000142686 C1orf216 -40264 sc-eQTL 3.54e-01 -0.215 0.231 0.055 gdT L2
ENSG00000142687 KIAA0319L 120680 sc-eQTL 1.59e-01 0.327 0.231 0.055 gdT L2
ENSG00000142694 EVA1B -645524 sc-eQTL 2.72e-02 -0.484 0.217 0.055 gdT L2
ENSG00000146463 ZMYM4 409921 sc-eQTL 3.72e-01 -0.201 0.224 0.055 gdT L2
ENSG00000163866 SMIM12 818875 sc-eQTL 2.91e-01 -0.257 0.242 0.055 gdT L2
ENSG00000163867 ZMYM6 646685 sc-eQTL 8.74e-01 -0.0402 0.252 0.055 gdT L2
ENSG00000181817 LSM10 -719278 sc-eQTL 9.32e-01 0.0192 0.223 0.055 gdT L2
ENSG00000196182 STK40 -707266 sc-eQTL 7.73e-01 -0.0615 0.212 0.055 gdT L2
ENSG00000197056 ZMYM1 646458 sc-eQTL 1.25e-01 -0.346 0.224 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 312553 sc-eQTL 1.00e+00 7.82e-05 0.215 0.055 gdT L2
ENSG00000239636 AC004865.2 100901 sc-eQTL 1.89e-02 -0.487 0.205 0.055 gdT L2
ENSG00000243749 TMEM35B 693277 sc-eQTL 8.59e-01 -0.0317 0.179 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 -477423 eQTL 0.0345 -0.06 0.0283 0.0 0.0 0.0481
ENSG00000054118 THRAP3 -545802 pQTL 0.00598 -0.207 0.0751 0.0 0.00159 0.052
ENSG00000054118 THRAP3 -545802 eQTL 0.0132 0.0691 0.0278 0.0 0.0 0.0481
ENSG00000092847 AGO1 -191178 eQTL 0.0734 0.0758 0.0423 0.00105 0.0 0.0481
ENSG00000092850 TEKT2 -405464 eQTL 1.41e-07 -0.563 0.106 0.0 0.0 0.0481
ENSG00000116863 ADPRHL2 -410262 eQTL 0.00292 -0.106 0.0356 0.0 0.0 0.0481
ENSG00000142686 C1orf216 -40264 eQTL 0.00165 -0.143 0.0454 0.0 0.0 0.0481
ENSG00000142687 KIAA0319L 120680 eQTL 0.0486 0.0566 0.0287 0.0 0.0 0.0481
ENSG00000171812 COL8A2 -446592 eQTL 0.0371 0.119 0.057 0.0 0.0 0.0481
ENSG00000181817 LSM10 -719278 eQTL 0.811 0.00762 0.0319 0.00225 0.0 0.0481
ENSG00000229994 RPL5P4 327908 eQTL 0.0418 0.176 0.0862 0.0 0.0 0.0481
ENSG00000239636 AC004865.2 100901 eQTL 6.54e-13 -0.534 0.0733 0.0 0.0 0.0481


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000092850 TEKT2 -405464 8.85e-07 5.7e-07 1e-07 4.04e-07 9.86e-08 2.12e-07 5.54e-07 1.4e-07 3.94e-07 2.28e-07 5.73e-07 3.61e-07 7.93e-07 1.49e-07 2.07e-07 2.1e-07 3.13e-07 3.82e-07 1.97e-07 1.63e-07 2.09e-07 3.71e-07 3.45e-07 1.63e-07 7.42e-07 2.39e-07 2.62e-07 2.68e-07 3.86e-07 5.56e-07 2.6e-07 5.99e-08 4.49e-08 1.54e-07 3.42e-07 1.28e-07 1.06e-07 9.46e-08 5.93e-08 2.59e-08 9.7e-08 5.52e-07 4.24e-08 1.79e-08 1.26e-07 1.42e-08 1.04e-07 1.28e-08 5.05e-08
ENSG00000116863 ADPRHL2 -410262 8.7e-07 5.6e-07 1.02e-07 3.95e-07 9.29e-08 2.08e-07 5.28e-07 1.38e-07 3.82e-07 2.26e-07 5.58e-07 3.48e-07 7.71e-07 1.41e-07 1.9e-07 2.18e-07 2.98e-07 3.73e-07 1.93e-07 1.55e-07 2.05e-07 3.76e-07 3.3e-07 1.61e-07 7.01e-07 2.42e-07 2.56e-07 2.54e-07 3.58e-07 5.28e-07 2.54e-07 7.03e-08 4.35e-08 1.5e-07 3.48e-07 1.19e-07 1.11e-07 9.33e-08 6.38e-08 2.53e-08 8.75e-08 5.29e-07 4.18e-08 1.77e-08 1.27e-07 1.37e-08 8.84e-08 1.26e-08 5.54e-08
ENSG00000142686 C1orf216 -40264 8.84e-06 9.95e-06 1.3e-06 5.54e-06 2.34e-06 4.24e-06 1.09e-05 1.79e-06 8.98e-06 5.04e-06 1.24e-05 5.25e-06 1.51e-05 3.67e-06 2.6e-06 6.57e-06 4.66e-06 7.27e-06 2.66e-06 2.78e-06 5.16e-06 9.11e-06 8.25e-06 3.3e-06 1.39e-05 3.89e-06 4.81e-06 3.88e-06 1.02e-05 9.37e-06 5.45e-06 9.81e-07 1.21e-06 3.36e-06 4.27e-06 2.81e-06 1.83e-06 1.89e-06 2.19e-06 9.75e-07 1e-06 1.27e-05 1.39e-06 1.7e-07 7.68e-07 1.76e-06 1.4e-06 7.48e-07 4.19e-07
ENSG00000171812 COL8A2 -446592 7.74e-07 4.24e-07 9.16e-08 3.43e-07 1.07e-07 1.71e-07 4.42e-07 9.69e-08 2.78e-07 1.78e-07 3.97e-07 2.8e-07 6e-07 1.07e-07 1.45e-07 1.76e-07 1.73e-07 3.3e-07 1.55e-07 1.15e-07 1.86e-07 2.96e-07 3.02e-07 1.19e-07 5.15e-07 2.2e-07 2.23e-07 1.97e-07 2.76e-07 3.71e-07 1.95e-07 7.6e-08 5.48e-08 1.37e-07 3.05e-07 8.75e-08 1.03e-07 7.98e-08 4.04e-08 6.05e-08 4.82e-08 3.85e-07 2.67e-08 2.04e-08 1.1e-07 1.59e-08 9.98e-08 7.14e-09 5.58e-08
ENSG00000239636 AC004865.2 100901 4.74e-06 4.94e-06 8.29e-07 2.79e-06 1.21e-06 1.39e-06 4.23e-06 1.01e-06 4.4e-06 2.08e-06 4.9e-06 3.41e-06 7.1e-06 2.37e-06 1.44e-06 2.98e-06 1.98e-06 2.96e-06 1.33e-06 1.01e-06 2.62e-06 4.49e-06 3.84e-06 1.52e-06 5.54e-06 1.52e-06 2.45e-06 1.78e-06 4.21e-06 4.18e-06 2.51e-06 5.93e-07 6.52e-07 1.6e-06 2.15e-06 9e-07 9.59e-07 4.93e-07 1.06e-06 3.23e-07 4.42e-07 5.74e-06 3.63e-07 1.86e-07 4.35e-07 6.74e-07 7.44e-07 3.18e-07 2.56e-07
ENSG00000271914 \N -251485 1.27e-06 1.01e-06 3.49e-07 1.14e-06 3.23e-07 5.26e-07 1.6e-06 3.65e-07 1.41e-06 4.36e-07 1.56e-06 6.62e-07 2.15e-06 2.96e-07 5.58e-07 8.19e-07 8.42e-07 6.56e-07 7.55e-07 6.55e-07 6.56e-07 1.45e-06 8.53e-07 6.51e-07 2.26e-06 4.32e-07 8.68e-07 6.93e-07 1.32e-06 1.36e-06 6.14e-07 1.55e-07 1.97e-07 6.76e-07 5.2e-07 4.54e-07 5.19e-07 1.92e-07 3.87e-07 2.93e-07 2.89e-07 1.56e-06 9.6e-08 2.65e-08 1.65e-07 1.2e-07 2.26e-07 7e-08 8.53e-08