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Genes within 1Mb (chr1:35670545:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN 113072 sc-eQTL 9.67e-01 0.00866 0.211 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 -485508 sc-eQTL 3.53e-01 0.176 0.189 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -553887 sc-eQTL 5.91e-01 -0.101 0.188 0.05 CD8_TEM L2
ENSG00000092847 AGO1 -199263 sc-eQTL 5.97e-01 -0.104 0.197 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 740895 sc-eQTL 2.67e-02 -0.406 0.182 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 477400 sc-eQTL 9.74e-02 -0.193 0.116 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 -418347 sc-eQTL 7.27e-02 -0.361 0.2 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 -485034 sc-eQTL 4.67e-01 -0.129 0.177 0.05 CD8_TEM L2
ENSG00000116898 MRPS15 -793839 sc-eQTL 9.30e-01 0.0167 0.189 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 29019 sc-eQTL 4.10e-01 0.149 0.18 0.05 CD8_TEM L2
ENSG00000126070 AGO3 -260173 sc-eQTL 6.84e-01 0.0803 0.197 0.05 CD8_TEM L2
ENSG00000134698 AGO4 -137471 sc-eQTL 8.65e-01 -0.034 0.199 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -48349 sc-eQTL 8.46e-01 -0.0365 0.187 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L 112595 sc-eQTL 1.84e-01 -0.264 0.198 0.05 CD8_TEM L2
ENSG00000142694 EVA1B -653609 sc-eQTL 7.47e-01 0.0628 0.194 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 401836 sc-eQTL 7.68e-01 -0.0609 0.206 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 810790 sc-eQTL 4.07e-01 0.17 0.204 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 638600 sc-eQTL 2.29e-01 -0.244 0.203 0.05 CD8_TEM L2
ENSG00000181817 LSM10 -727363 sc-eQTL 5.31e-01 0.113 0.179 0.05 CD8_TEM L2
ENSG00000196182 STK40 -715351 sc-eQTL 7.05e-01 -0.0717 0.189 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 638373 sc-eQTL 7.80e-02 -0.333 0.188 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 304468 sc-eQTL 1.19e-01 0.286 0.182 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 92816 sc-eQTL 6.41e-01 -0.0903 0.194 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B 685192 sc-eQTL 6.92e-02 -0.264 0.144 0.05 CD8_TEM L2
ENSG00000020129 NCDN 113072 sc-eQTL 7.25e-02 0.347 0.191 0.056 PB L2
ENSG00000054116 TRAPPC3 -485508 sc-eQTL 3.74e-01 0.118 0.132 0.056 PB L2
ENSG00000054118 THRAP3 -553887 sc-eQTL 5.68e-01 -0.124 0.217 0.056 PB L2
ENSG00000092847 AGO1 -199263 sc-eQTL 6.57e-01 0.1 0.225 0.056 PB L2
ENSG00000116544 DLGAP3 740895 sc-eQTL 7.13e-01 0.0878 0.238 0.056 PB L2
ENSG00000116560 SFPQ 477400 sc-eQTL 2.98e-01 -0.143 0.137 0.056 PB L2
ENSG00000116863 ADPRHL2 -418347 sc-eQTL 6.20e-01 0.119 0.238 0.056 PB L2
ENSG00000116871 MAP7D1 -485034 sc-eQTL 5.57e-01 -0.124 0.21 0.056 PB L2
ENSG00000116898 MRPS15 -793839 sc-eQTL 2.53e-01 -0.148 0.128 0.056 PB L2
ENSG00000126067 PSMB2 29019 sc-eQTL 9.63e-01 -0.00536 0.116 0.056 PB L2
ENSG00000126070 AGO3 -260173 sc-eQTL 4.06e-01 -0.207 0.248 0.056 PB L2
ENSG00000134698 AGO4 -137471 sc-eQTL 5.78e-01 -0.115 0.206 0.056 PB L2
ENSG00000142686 C1orf216 -48349 sc-eQTL 1.80e-01 0.269 0.2 0.056 PB L2
ENSG00000142687 KIAA0319L 112595 sc-eQTL 4.07e-01 -0.186 0.224 0.056 PB L2
ENSG00000146463 ZMYM4 401836 sc-eQTL 3.58e-01 0.236 0.256 0.056 PB L2
ENSG00000163866 SMIM12 810790 sc-eQTL 3.82e-01 -0.19 0.217 0.056 PB L2
ENSG00000163867 ZMYM6 638600 sc-eQTL 5.60e-01 0.15 0.257 0.056 PB L2
ENSG00000181817 LSM10 -727363 sc-eQTL 5.87e-01 -0.0981 0.18 0.056 PB L2
ENSG00000196182 STK40 -715351 sc-eQTL 8.08e-01 0.0483 0.198 0.056 PB L2
ENSG00000197056 ZMYM1 638373 sc-eQTL 4.73e-01 0.16 0.223 0.056 PB L2
ENSG00000227409 ZMYM4-AS1 304468 sc-eQTL 1.00e-01 0.37 0.223 0.056 PB L2
ENSG00000239636 AC004865.2 92816 sc-eQTL 7.96e-01 0.0594 0.23 0.056 PB L2
ENSG00000243749 TMEM35B 685192 sc-eQTL 5.30e-01 -0.135 0.215 0.056 PB L2
ENSG00000020129 NCDN 113072 sc-eQTL 8.92e-01 0.0248 0.183 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 -485508 sc-eQTL 8.28e-01 0.0325 0.149 0.05 Pro_T L2
ENSG00000054118 THRAP3 -553887 sc-eQTL 5.50e-01 -0.101 0.168 0.05 Pro_T L2
ENSG00000092847 AGO1 -199263 sc-eQTL 7.78e-01 -0.0569 0.202 0.05 Pro_T L2
ENSG00000092853 CLSPN -99433 sc-eQTL 3.72e-01 0.0814 0.091 0.05 Pro_T L2
ENSG00000116544 DLGAP3 740895 sc-eQTL 9.32e-02 0.288 0.171 0.05 Pro_T L2
ENSG00000116560 SFPQ 477400 sc-eQTL 5.84e-01 -0.0715 0.131 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 -418347 sc-eQTL 4.31e-01 0.15 0.191 0.05 Pro_T L2
ENSG00000116871 MAP7D1 -485034 sc-eQTL 3.19e-01 -0.136 0.137 0.05 Pro_T L2
ENSG00000116898 MRPS15 -793839 sc-eQTL 4.73e-01 0.0962 0.134 0.05 Pro_T L2
ENSG00000126067 PSMB2 29019 sc-eQTL 3.03e-01 0.106 0.103 0.05 Pro_T L2
ENSG00000126070 AGO3 -260173 sc-eQTL 2.57e-01 0.211 0.185 0.05 Pro_T L2
ENSG00000134698 AGO4 -137471 sc-eQTL 2.65e-01 0.191 0.171 0.05 Pro_T L2
ENSG00000142686 C1orf216 -48349 sc-eQTL 1.63e-01 -0.247 0.176 0.05 Pro_T L2
ENSG00000142687 KIAA0319L 112595 sc-eQTL 4.47e-01 -0.153 0.2 0.05 Pro_T L2
ENSG00000142694 EVA1B -653609 sc-eQTL 4.22e-02 -0.357 0.175 0.05 Pro_T L2
ENSG00000146463 ZMYM4 401836 sc-eQTL 9.16e-01 -0.0204 0.195 0.05 Pro_T L2
ENSG00000163866 SMIM12 810790 sc-eQTL 2.99e-02 0.405 0.185 0.05 Pro_T L2
ENSG00000163867 ZMYM6 638600 sc-eQTL 9.83e-01 0.00442 0.203 0.05 Pro_T L2
ENSG00000181817 LSM10 -727363 sc-eQTL 6.31e-01 0.0776 0.161 0.05 Pro_T L2
ENSG00000196182 STK40 -715351 sc-eQTL 3.33e-01 -0.187 0.192 0.05 Pro_T L2
ENSG00000197056 ZMYM1 638373 sc-eQTL 1.16e-01 0.266 0.168 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 304468 sc-eQTL 1.93e-01 0.234 0.179 0.05 Pro_T L2
ENSG00000239636 AC004865.2 92816 sc-eQTL 7.78e-01 0.0512 0.182 0.05 Pro_T L2
ENSG00000243749 TMEM35B 685192 sc-eQTL 9.44e-01 0.0107 0.153 0.05 Pro_T L2
ENSG00000020129 NCDN 113072 sc-eQTL 9.33e-01 0.0179 0.211 0.051 pDC L2
ENSG00000054116 TRAPPC3 -485508 sc-eQTL 8.01e-01 -0.0537 0.212 0.051 pDC L2
ENSG00000054118 THRAP3 -553887 sc-eQTL 9.13e-02 -0.321 0.189 0.051 pDC L2
ENSG00000092847 AGO1 -199263 sc-eQTL 1.97e-01 -0.279 0.215 0.051 pDC L2
ENSG00000092853 CLSPN -99433 sc-eQTL 4.69e-01 0.114 0.156 0.051 pDC L2
ENSG00000116544 DLGAP3 740895 sc-eQTL 9.71e-01 -0.00761 0.207 0.051 pDC L2
ENSG00000116560 SFPQ 477400 sc-eQTL 6.80e-02 -0.247 0.134 0.051 pDC L2
ENSG00000116863 ADPRHL2 -418347 sc-eQTL 4.41e-01 -0.159 0.205 0.051 pDC L2
ENSG00000116871 MAP7D1 -485034 sc-eQTL 1.77e-01 -0.251 0.185 0.051 pDC L2
ENSG00000116898 MRPS15 -793839 sc-eQTL 1.06e-01 0.328 0.202 0.051 pDC L2
ENSG00000119535 CSF3R -812733 sc-eQTL 3.32e-02 0.271 0.126 0.051 pDC L2
ENSG00000126067 PSMB2 29019 sc-eQTL 9.11e-02 -0.311 0.183 0.051 pDC L2
ENSG00000126070 AGO3 -260173 sc-eQTL 5.49e-01 -0.119 0.198 0.051 pDC L2
ENSG00000134698 AGO4 -137471 sc-eQTL 9.59e-01 -0.00996 0.193 0.051 pDC L2
ENSG00000142686 C1orf216 -48349 sc-eQTL 2.44e-02 0.374 0.164 0.051 pDC L2
ENSG00000142687 KIAA0319L 112595 sc-eQTL 5.92e-01 0.122 0.228 0.051 pDC L2
ENSG00000142694 EVA1B -653609 sc-eQTL 3.78e-01 0.141 0.159 0.051 pDC L2
ENSG00000146463 ZMYM4 401836 sc-eQTL 6.99e-01 0.08 0.206 0.051 pDC L2
ENSG00000163866 SMIM12 810790 sc-eQTL 7.96e-01 -0.0558 0.215 0.051 pDC L2
ENSG00000163867 ZMYM6 638600 sc-eQTL 3.83e-01 -0.168 0.192 0.051 pDC L2
ENSG00000171812 COL8A2 -454677 sc-eQTL 9.56e-01 0.0113 0.203 0.051 pDC L2
ENSG00000181817 LSM10 -727363 sc-eQTL 8.04e-01 -0.0485 0.195 0.051 pDC L2
ENSG00000196182 STK40 -715351 sc-eQTL 4.36e-01 0.16 0.204 0.051 pDC L2
ENSG00000197056 ZMYM1 638373 sc-eQTL 6.33e-01 -0.0949 0.198 0.051 pDC L2
ENSG00000214193 SH3D21 -635823 sc-eQTL 8.49e-01 -0.0371 0.195 0.051 pDC L2
ENSG00000227409 ZMYM4-AS1 304468 sc-eQTL 6.58e-01 0.0885 0.2 0.051 pDC L2
ENSG00000239636 AC004865.2 92816 sc-eQTL 7.61e-01 0.0655 0.215 0.051 pDC L2
ENSG00000243749 TMEM35B 685192 sc-eQTL 3.49e-01 0.165 0.176 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 -485508 eQTL 0.000316 0.0914 0.0253 0.0 0.0 0.0505
ENSG00000092847 AGO1 -199263 eQTL 0.0657 -0.0698 0.0379 0.00103 0.0 0.0505
ENSG00000116819 TFAP2E 97231 eQTL 1.43e-05 0.242 0.0554 0.00556 0.00328 0.0505
ENSG00000116871 MAP7D1 -485034 eQTL 3.65e-09 0.17 0.0285 0.0 0.0 0.0505
ENSG00000134698 AGO4 -137471 eQTL 0.000314 0.0707 0.0196 0.0 0.0 0.0505
ENSG00000142686 C1orf216 -48349 eQTL 2.68e-12 0.282 0.0398 0.0 0.0 0.0505
ENSG00000142694 EVA1B -653609 eQTL 0.0339 -0.0939 0.0442 0.00112 0.0 0.0505
ENSG00000163866 SMIM12 810790 eQTL 0.0345 0.119 0.0561 0.0 0.0 0.0505
ENSG00000171812 COL8A2 -454677 eQTL 0.00971 -0.132 0.051 0.0 0.0 0.0505
ENSG00000239636 AC004865.2 92816 eQTL 5.21e-08 0.365 0.0664 0.0 0.0 0.0505
ENSG00000243749 TMEM35B 685192 eQTL 0.00775 0.0967 0.0362 0.0 0.0 0.0505

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054116 TRAPPC3 -485508 9.39e-07 4.63e-07 1.05e-07 3.43e-07 1.07e-07 2.12e-07 5.31e-07 9.26e-08 3.51e-07 2.28e-07 4.88e-07 3.68e-07 6.77e-07 1.1e-07 1.78e-07 2.08e-07 1.73e-07 3.79e-07 1.93e-07 1.43e-07 1.91e-07 3.15e-07 3.11e-07 1.25e-07 6.59e-07 2.46e-07 2.57e-07 2.19e-07 3.27e-07 4.3e-07 2.55e-07 7.12e-08 4.55e-08 1.39e-07 3e-07 6.94e-08 1.1e-07 7.53e-08 4.55e-08 5.77e-08 1.12e-07 4.02e-07 4.12e-08 1.55e-08 1.34e-07 1.59e-08 9.95e-08 1.17e-08 5.19e-08
ENSG00000116871 MAP7D1 -485034 9.39e-07 4.63e-07 1.05e-07 3.43e-07 1.07e-07 2.12e-07 5.31e-07 9.26e-08 3.51e-07 2.28e-07 4.88e-07 3.68e-07 6.77e-07 1.1e-07 1.78e-07 2.08e-07 1.73e-07 3.79e-07 1.93e-07 1.51e-07 1.91e-07 3.34e-07 3.11e-07 1.25e-07 6.59e-07 2.46e-07 2.57e-07 2.19e-07 3.27e-07 4.3e-07 2.55e-07 7.12e-08 4.55e-08 1.39e-07 3e-07 6.94e-08 1.1e-07 7.53e-08 4.55e-08 5.77e-08 1.12e-07 4.02e-07 4.12e-08 1.55e-08 1.34e-07 1.59e-08 9.95e-08 1.17e-08 5.19e-08
ENSG00000116883 \N -653189 4.68e-07 1.67e-07 6.86e-08 2.26e-07 1.02e-07 1.13e-07 2.86e-07 5.82e-08 1.86e-07 1.11e-07 1.83e-07 1.57e-07 2.74e-07 8.44e-08 6.6e-08 9.35e-08 4.63e-08 2.21e-07 7.11e-08 6.58e-08 1.26e-07 1.81e-07 1.73e-07 4.37e-08 2.36e-07 1.51e-07 1.25e-07 1.36e-07 1.34e-07 1.39e-07 1.26e-07 4.51e-08 4.86e-08 9.72e-08 5.41e-08 3.18e-08 5.26e-08 7.68e-08 5.59e-08 6.55e-08 3.43e-08 1.55e-07 3.65e-08 7.78e-09 4.99e-08 9.44e-09 8.93e-08 0.0 4.68e-08
ENSG00000134698 AGO4 -137471 4.41e-06 3.74e-06 6.9e-07 1.95e-06 8.72e-07 1.19e-06 2.95e-06 1.03e-06 2.76e-06 1.66e-06 3.62e-06 2.55e-06 5.69e-06 1.25e-06 1.3e-06 1.99e-06 1.56e-06 2.38e-06 1.44e-06 8.98e-07 1.81e-06 3.65e-06 3.3e-06 1.86e-06 4.69e-06 1.24e-06 1.87e-06 1.5e-06 3.82e-06 3.06e-06 2e-06 4.55e-07 8.14e-07 1.74e-06 1.91e-06 9.02e-07 8.89e-07 4.73e-07 1.34e-06 3.28e-07 4.42e-07 4.19e-06 4.46e-07 1.89e-07 3.58e-07 3.53e-07 6.48e-07 2.41e-07 2.87e-07
ENSG00000142686 C1orf216 -48349 9e-06 9.55e-06 1.43e-06 5.03e-06 2.4e-06 4.24e-06 1.08e-05 1.92e-06 8.5e-06 4.98e-06 1.17e-05 5.28e-06 1.35e-05 3.85e-06 3.01e-06 6.54e-06 4.01e-06 7.17e-06 2.6e-06 2.84e-06 5.16e-06 8.98e-06 7.49e-06 3.38e-06 1.3e-05 3.77e-06 4.87e-06 3.75e-06 1.02e-05 8.46e-06 5.06e-06 9.59e-07 1.17e-06 3.36e-06 4.46e-06 2.67e-06 1.83e-06 1.95e-06 2.02e-06 1e-06 9.4e-07 1.15e-05 1.42e-06 1.32e-07 7.75e-07 1.75e-06 1.47e-06 7.04e-07 4.71e-07
ENSG00000142694 EVA1B -653609 4.68e-07 1.67e-07 6.45e-08 2.26e-07 1.02e-07 1.13e-07 2.86e-07 5.82e-08 1.86e-07 1.11e-07 1.83e-07 1.57e-07 2.74e-07 8.44e-08 6.6e-08 9.35e-08 4.63e-08 2.21e-07 7.11e-08 6.58e-08 1.26e-07 1.81e-07 1.73e-07 4.37e-08 2.36e-07 1.51e-07 1.25e-07 1.36e-07 1.34e-07 1.39e-07 1.26e-07 4.51e-08 4.86e-08 9.72e-08 5.41e-08 3.18e-08 5.26e-08 7.68e-08 5.59e-08 6.55e-08 3.43e-08 1.55e-07 3.65e-08 7.78e-09 4.99e-08 9.44e-09 8.93e-08 0.0 4.68e-08
ENSG00000196182 \N -715351 3.71e-07 1.53e-07 6.15e-08 2.22e-07 1.03e-07 7.75e-08 2.4e-07 5.85e-08 1.59e-07 9.72e-08 1.63e-07 1.37e-07 2.24e-07 8e-08 5.69e-08 8.71e-08 4.18e-08 1.8e-07 7.29e-08 6.16e-08 1.22e-07 1.56e-07 1.64e-07 3.42e-08 2.09e-07 1.31e-07 1.2e-07 1.1e-07 1.32e-07 1.1e-07 1.14e-07 4.4e-08 4.37e-08 9.81e-08 3.36e-08 2.74e-08 3.91e-08 8.17e-08 6.35e-08 5.35e-08 4.46e-08 1.59e-07 3.19e-08 1.86e-08 3.34e-08 8.31e-09 7.61e-08 2.05e-09 4.94e-08
ENSG00000239636 AC004865.2 92816 5.58e-06 5.07e-06 6.65e-07 3.48e-06 1.67e-06 1.61e-06 7.3e-06 1.18e-06 4.91e-06 2.81e-06 6.19e-06 3.17e-06 7.69e-06 1.95e-06 9.37e-07 3.75e-06 1.93e-06 3.99e-06 1.47e-06 1.39e-06 2.75e-06 4.9e-06 4.6e-06 1.76e-06 7.97e-06 2.07e-06 2.23e-06 1.49e-06 4.95e-06 4.94e-06 2.76e-06 4.18e-07 7.36e-07 2.16e-06 2.06e-06 1.17e-06 1.08e-06 5e-07 8.52e-07 5.61e-07 7.1e-07 6.1e-06 5.44e-07 1.81e-07 7.17e-07 1.2e-06 1.17e-06 6.9e-07 5.13e-07