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Genes within 1Mb (chr1:35349673:C:CA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -207800 sc-eQTL 3.28e-02 0.437 0.203 0.052 CD4_CTL L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 7.10e-01 0.0703 0.188 0.052 CD4_CTL L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 6.05e-01 0.0993 0.192 0.052 CD4_CTL L2
ENSG00000092847 AGO1 -520135 sc-eQTL 3.11e-01 0.212 0.209 0.052 CD4_CTL L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 8.95e-01 -0.0251 0.191 0.052 CD4_CTL L2
ENSG00000116560 SFPQ 156528 sc-eQTL 2.78e-01 0.149 0.137 0.052 CD4_CTL L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 8.02e-01 -0.0516 0.205 0.052 CD4_CTL L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 2.18e-01 -0.205 0.166 0.052 CD4_CTL L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 7.49e-01 0.0627 0.195 0.052 CD4_CTL L2
ENSG00000126070 AGO3 -581045 sc-eQTL 2.18e-01 0.246 0.199 0.052 CD4_CTL L2
ENSG00000134698 AGO4 -458343 sc-eQTL 9.80e-01 -0.00464 0.185 0.052 CD4_CTL L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 2.13e-01 -0.234 0.188 0.052 CD4_CTL L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 3.71e-01 -0.187 0.209 0.052 CD4_CTL L2
ENSG00000142694 EVA1B -974481 sc-eQTL 7.03e-01 0.0695 0.182 0.052 CD4_CTL L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 7.15e-01 -0.0758 0.207 0.052 CD4_CTL L2
ENSG00000163866 SMIM12 489918 sc-eQTL 3.59e-01 0.179 0.195 0.052 CD4_CTL L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 5.52e-02 0.405 0.21 0.052 CD4_CTL L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 8.99e-01 -0.0272 0.214 0.052 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 3.95e-01 -0.164 0.192 0.052 CD4_CTL L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 6.04e-01 -0.0995 0.191 0.052 CD4_CTL L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 6.16e-01 0.0813 0.162 0.052 CD4_CTL L2
ENSG00000020129 NCDN -207800 sc-eQTL 6.38e-01 -0.0978 0.208 0.051 CD8_TCM L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 7.29e-01 0.0687 0.198 0.051 CD8_TCM L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 5.47e-02 0.372 0.193 0.051 CD8_TCM L2
ENSG00000092847 AGO1 -520135 sc-eQTL 1.30e-01 -0.302 0.198 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 8.07e-01 0.05 0.204 0.051 CD8_TCM L2
ENSG00000116560 SFPQ 156528 sc-eQTL 8.90e-01 0.0161 0.116 0.051 CD8_TCM L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 1.55e-01 0.304 0.213 0.051 CD8_TCM L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 9.72e-01 -0.00564 0.158 0.051 CD8_TCM L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 7.04e-01 -0.0741 0.195 0.051 CD8_TCM L2
ENSG00000126070 AGO3 -581045 sc-eQTL 2.10e-02 0.465 0.2 0.051 CD8_TCM L2
ENSG00000134698 AGO4 -458343 sc-eQTL 9.46e-01 -0.0141 0.208 0.051 CD8_TCM L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 2.64e-01 0.216 0.193 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 5.60e-01 -0.109 0.187 0.051 CD8_TCM L2
ENSG00000142694 EVA1B -974481 sc-eQTL 3.52e-01 0.177 0.189 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 2.62e-01 0.225 0.2 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 489918 sc-eQTL 2.46e-01 -0.231 0.198 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 8.75e-01 -0.0344 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 2.01e-01 0.255 0.199 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 8.56e-01 0.0342 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 9.56e-01 0.0108 0.197 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 9.85e-01 0.00295 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -207800 sc-eQTL 8.66e-01 0.0382 0.226 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 3.80e-01 -0.178 0.203 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 6.52e-01 0.0912 0.202 0.05 CD8_TEM L2
ENSG00000092847 AGO1 -520135 sc-eQTL 7.64e-01 -0.0636 0.212 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 8.88e-02 -0.335 0.196 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 156528 sc-eQTL 7.23e-01 -0.0446 0.125 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 3.96e-01 -0.184 0.216 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 9.96e-01 -0.00105 0.19 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 9.12e-01 0.0214 0.194 0.05 CD8_TEM L2
ENSG00000126070 AGO3 -581045 sc-eQTL 3.91e-01 0.182 0.212 0.05 CD8_TEM L2
ENSG00000134698 AGO4 -458343 sc-eQTL 6.30e-01 0.103 0.214 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 4.85e-01 -0.14 0.201 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 9.34e-01 0.0176 0.213 0.05 CD8_TEM L2
ENSG00000142694 EVA1B -974481 sc-eQTL 6.40e-01 -0.0977 0.208 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 8.10e-01 -0.0534 0.221 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 489918 sc-eQTL 2.38e-01 -0.259 0.219 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 3.80e-01 0.192 0.218 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 5.61e-01 0.119 0.203 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 8.63e-01 0.0341 0.197 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 7.23e-02 0.373 0.206 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 9.10e-01 -0.0177 0.156 0.05 CD8_TEM L2
ENSG00000020129 NCDN -207800 sc-eQTL 6.57e-01 0.0946 0.212 0.051 NK_CD56bright L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 3.78e-01 -0.162 0.184 0.051 NK_CD56bright L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 5.12e-02 0.388 0.198 0.051 NK_CD56bright L2
ENSG00000092847 AGO1 -520135 sc-eQTL 4.81e-02 -0.412 0.207 0.051 NK_CD56bright L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 7.63e-01 0.0611 0.203 0.051 NK_CD56bright L2
ENSG00000116560 SFPQ 156528 sc-eQTL 4.99e-01 -0.0898 0.133 0.051 NK_CD56bright L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 1.88e-01 -0.278 0.211 0.051 NK_CD56bright L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 2.33e-01 -0.203 0.17 0.051 NK_CD56bright L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 5.75e-02 -0.315 0.165 0.051 NK_CD56bright L2
ENSG00000126070 AGO3 -581045 sc-eQTL 9.10e-03 -0.55 0.209 0.051 NK_CD56bright L2
ENSG00000134698 AGO4 -458343 sc-eQTL 7.59e-01 0.0609 0.199 0.051 NK_CD56bright L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 1.61e-01 -0.286 0.203 0.051 NK_CD56bright L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 4.82e-01 0.144 0.205 0.051 NK_CD56bright L2
ENSG00000142694 EVA1B -974481 sc-eQTL 5.87e-02 0.314 0.165 0.051 NK_CD56bright L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 1.68e-01 0.258 0.186 0.051 NK_CD56bright L2
ENSG00000163866 SMIM12 489918 sc-eQTL 8.81e-01 0.0334 0.223 0.051 NK_CD56bright L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 8.32e-01 -0.0471 0.222 0.051 NK_CD56bright L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 9.38e-01 0.0153 0.198 0.051 NK_CD56bright L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 6.82e-02 0.352 0.192 0.051 NK_CD56bright L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 7.77e-01 0.0598 0.211 0.051 NK_CD56bright L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 7.48e-01 0.0554 0.173 0.051 NK_CD56bright L2
ENSG00000020129 NCDN -207800 sc-eQTL 7.07e-02 0.37 0.204 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 7.74e-01 0.0481 0.167 0.05 Pro_T L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 3.19e-01 -0.188 0.188 0.05 Pro_T L2
ENSG00000092847 AGO1 -520135 sc-eQTL 9.14e-01 0.0246 0.226 0.05 Pro_T L2
ENSG00000092853 CLSPN -420305 sc-eQTL 5.51e-01 -0.0609 0.102 0.05 Pro_T L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 4.43e-01 -0.148 0.192 0.05 Pro_T L2
ENSG00000116560 SFPQ 156528 sc-eQTL 5.92e-02 0.275 0.145 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 3.22e-02 0.455 0.211 0.05 Pro_T L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 6.81e-02 0.279 0.152 0.05 Pro_T L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 4.61e-01 -0.0849 0.115 0.05 Pro_T L2
ENSG00000126070 AGO3 -581045 sc-eQTL 9.74e-02 0.344 0.207 0.05 Pro_T L2
ENSG00000134698 AGO4 -458343 sc-eQTL 1.86e-01 0.253 0.191 0.05 Pro_T L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 7.30e-03 -0.528 0.195 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 3.86e-01 0.195 0.224 0.05 Pro_T L2
ENSG00000142694 EVA1B -974481 sc-eQTL 6.00e-01 -0.104 0.197 0.05 Pro_T L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 6.98e-01 0.0846 0.218 0.05 Pro_T L2
ENSG00000163866 SMIM12 489918 sc-eQTL 8.00e-01 -0.053 0.209 0.05 Pro_T L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 1.19e-01 0.354 0.226 0.05 Pro_T L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 7.72e-01 -0.055 0.19 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 2.22e-01 -0.245 0.2 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 2.52e-01 0.233 0.203 0.05 Pro_T L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 3.74e-01 0.152 0.17 0.05 Pro_T L2
ENSG00000020129 NCDN -207800 sc-eQTL 7.25e-01 0.0862 0.244 0.055 gdT L2
ENSG00000054116 TRAPPC3 -806380 sc-eQTL 7.52e-01 0.0672 0.212 0.055 gdT L2
ENSG00000054118 THRAP3 -874759 sc-eQTL 2.52e-01 0.283 0.246 0.055 gdT L2
ENSG00000092847 AGO1 -520135 sc-eQTL 2.64e-01 -0.29 0.258 0.055 gdT L2
ENSG00000092853 CLSPN -420305 sc-eQTL 4.84e-01 -0.143 0.203 0.055 gdT L2
ENSG00000116544 DLGAP3 420023 sc-eQTL 7.75e-01 0.0681 0.238 0.055 gdT L2
ENSG00000116560 SFPQ 156528 sc-eQTL 2.10e-01 -0.196 0.156 0.055 gdT L2
ENSG00000116863 ADPRHL2 -739219 sc-eQTL 7.30e-01 0.0827 0.239 0.055 gdT L2
ENSG00000116871 MAP7D1 -805906 sc-eQTL 8.36e-01 0.0423 0.204 0.055 gdT L2
ENSG00000126067 PSMB2 -291853 sc-eQTL 2.35e-01 0.261 0.219 0.055 gdT L2
ENSG00000126070 AGO3 -581045 sc-eQTL 3.20e-01 0.237 0.237 0.055 gdT L2
ENSG00000134698 AGO4 -458343 sc-eQTL 3.11e-01 0.236 0.232 0.055 gdT L2
ENSG00000142686 C1orf216 -369221 sc-eQTL 9.85e-01 -0.00459 0.236 0.055 gdT L2
ENSG00000142687 KIAA0319L -208277 sc-eQTL 3.80e-01 -0.209 0.237 0.055 gdT L2
ENSG00000142694 EVA1B -974481 sc-eQTL 1.31e-01 -0.338 0.223 0.055 gdT L2
ENSG00000146463 ZMYM4 80964 sc-eQTL 4.20e-01 0.185 0.229 0.055 gdT L2
ENSG00000163866 SMIM12 489918 sc-eQTL 5.97e-01 -0.131 0.248 0.055 gdT L2
ENSG00000163867 ZMYM6 317728 sc-eQTL 2.81e-02 0.56 0.253 0.055 gdT L2
ENSG00000197056 ZMYM1 317501 sc-eQTL 5.34e-01 0.144 0.23 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -16404 sc-eQTL 3.48e-01 -0.205 0.218 0.055 gdT L2
ENSG00000239636 AC004865.2 -228056 sc-eQTL 2.85e-01 0.228 0.212 0.055 gdT L2
ENSG00000243749 TMEM35B 364320 sc-eQTL 6.15e-02 -0.339 0.18 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054118 \N -874759 2.8e-07 1.08e-07 3.34e-08 1.66e-07 1.03e-07 9.3e-08 1.39e-07 5.29e-08 1.36e-07 3.99e-08 1.61e-07 7.49e-08 1.21e-07 6.07e-08 4.77e-08 7.87e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.33e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.03e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8.09e-08 1.01e-07 4.23e-08 4.01e-08 8.48e-08 8.39e-08 3.87e-08 3.31e-08 1.36e-07 4.51e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000126067 \N -291853 4.54e-06 8.81e-07 1.07e-07 2.41e-07 1.06e-07 6.06e-07 7.99e-07 5.48e-08 2.75e-07 1.6e-07 5.93e-07 3.5e-07 1.02e-06 1.52e-07 2.26e-07 3.96e-07 8.74e-08 4.16e-07 1.51e-07 6.16e-08 1.8e-07 1.11e-06 4.4e-07 3.22e-08 5.15e-07 2.13e-07 2.56e-07 1.67e-07 6.91e-07 4.3e-07 3.32e-07 3.96e-08 6.08e-08 1.24e-07 1.33e-07 3.57e-08 5.29e-08 7.51e-08 6.43e-08 3.75e-08 5.41e-08 1.49e-06 1.67e-07 1.93e-08 6.38e-08 4.18e-08 8.98e-08 3.95e-09 4.73e-08
ENSG00000171812 \N -775549 3.27e-07 1.06e-07 3.28e-08 1.65e-07 1.03e-07 9.61e-08 1.41e-07 5.29e-08 1.37e-07 4.23e-08 1.63e-07 7.6e-08 1.27e-07 6.07e-08 4.77e-08 8.01e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.28e-07 1.29e-07 5.23e-08 1.32e-07 1.09e-07 1.11e-07 8.49e-08 9.97e-08 1.1e-07 9.75e-08 3.29e-08 2.75e-08 8e-08 9.69e-08 4.14e-08 4.01e-08 8.28e-08 8.44e-08 3.87e-08 3.18e-08 1.35e-07 4.12e-08 2.96e-08 1.15e-07 1.78e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000239636 \N -228056 1.11e-05 1.5e-06 3.05e-07 4.36e-07 1.18e-07 8.24e-07 1.48e-06 6.75e-08 7.15e-07 3.05e-07 1.35e-06 5.98e-07 2.01e-06 2.96e-07 4.92e-07 9.27e-07 7.62e-07 7.21e-07 3.26e-07 1.78e-07 2.82e-07 1.9e-06 8.37e-07 1.34e-07 1.72e-06 2.53e-07 6.19e-07 4.06e-07 1.46e-06 1.08e-06 5.62e-07 3.66e-08 2.27e-07 3.58e-07 3.47e-07 1.09e-07 7.52e-08 8.15e-08 5.89e-08 7.65e-08 2.87e-08 3.35e-06 4e-07 1.26e-08 3.55e-08 1.11e-07 8.01e-08 1.96e-09 5e-08
ENSG00000241014 \N 370967 2.63e-06 3.77e-07 7e-08 1.89e-07 9.79e-08 3.12e-07 5.01e-07 5.33e-08 1.75e-07 7.6e-08 1.96e-07 1.46e-07 5.09e-07 8.55e-08 5.36e-08 1.63e-07 4.12e-08 2.9e-07 7.36e-08 4.04e-08 1.23e-07 4.11e-07 2.48e-07 4.05e-08 2.17e-07 1.31e-07 1.25e-07 1.04e-07 2.66e-07 1.36e-07 1.43e-07 3.76e-08 3.13e-08 8.89e-08 3.12e-08 3.04e-08 4.79e-08 9.36e-08 7.58e-08 3.55e-08 4.76e-08 7.54e-07 4.24e-08 5.68e-09 9.21e-08 9.12e-09 1.19e-07 4.41e-09 4.85e-08
ENSG00000243749 \N 364320 2.62e-06 4.63e-07 6.72e-08 1.97e-07 1.01e-07 3.2e-07 5.2e-07 5.33e-08 1.85e-07 8.53e-08 2.04e-07 1.52e-07 5.39e-07 8.66e-08 5.69e-08 1.75e-07 4.24e-08 2.96e-07 7.42e-08 4.1e-08 1.27e-07 4.38e-07 2.63e-07 3.79e-08 2.28e-07 1.39e-07 1.29e-07 1.12e-07 2.84e-07 1.39e-07 1.59e-07 3.95e-08 3.21e-08 9.52e-08 3.51e-08 3.28e-08 4.75e-08 9.23e-08 7.52e-08 3.55e-08 4.63e-08 7.54e-07 4.53e-08 5.77e-09 9.21e-08 1.3e-08 1.21e-07 4.33e-09 4.77e-08