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Genes within 1Mb (chr1:35310899:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -246574 sc-eQTL 3.28e-02 0.437 0.203 0.052 CD4_CTL L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 7.10e-01 0.0703 0.188 0.052 CD4_CTL L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 6.05e-01 0.0993 0.192 0.052 CD4_CTL L2
ENSG00000092847 AGO1 -558909 sc-eQTL 3.11e-01 0.212 0.209 0.052 CD4_CTL L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 8.95e-01 -0.0251 0.191 0.052 CD4_CTL L2
ENSG00000116560 SFPQ 117754 sc-eQTL 2.78e-01 0.149 0.137 0.052 CD4_CTL L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 8.02e-01 -0.0516 0.205 0.052 CD4_CTL L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 2.18e-01 -0.205 0.166 0.052 CD4_CTL L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 7.49e-01 0.0627 0.195 0.052 CD4_CTL L2
ENSG00000126070 AGO3 -619819 sc-eQTL 2.18e-01 0.246 0.199 0.052 CD4_CTL L2
ENSG00000134698 AGO4 -497117 sc-eQTL 9.80e-01 -0.00464 0.185 0.052 CD4_CTL L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 2.13e-01 -0.234 0.188 0.052 CD4_CTL L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 3.71e-01 -0.187 0.209 0.052 CD4_CTL L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 7.15e-01 -0.0758 0.207 0.052 CD4_CTL L2
ENSG00000163866 SMIM12 451144 sc-eQTL 3.59e-01 0.179 0.195 0.052 CD4_CTL L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 5.52e-02 0.405 0.21 0.052 CD4_CTL L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 8.99e-01 -0.0272 0.214 0.052 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 3.95e-01 -0.164 0.192 0.052 CD4_CTL L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 6.04e-01 -0.0995 0.191 0.052 CD4_CTL L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 6.16e-01 0.0813 0.162 0.052 CD4_CTL L2
ENSG00000020129 NCDN -246574 sc-eQTL 6.38e-01 -0.0978 0.208 0.051 CD8_TCM L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 7.29e-01 0.0687 0.198 0.051 CD8_TCM L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 5.47e-02 0.372 0.193 0.051 CD8_TCM L2
ENSG00000092847 AGO1 -558909 sc-eQTL 1.30e-01 -0.302 0.198 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 8.07e-01 0.05 0.204 0.051 CD8_TCM L2
ENSG00000116560 SFPQ 117754 sc-eQTL 8.90e-01 0.0161 0.116 0.051 CD8_TCM L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 1.55e-01 0.304 0.213 0.051 CD8_TCM L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 9.72e-01 -0.00564 0.158 0.051 CD8_TCM L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 7.04e-01 -0.0741 0.195 0.051 CD8_TCM L2
ENSG00000126070 AGO3 -619819 sc-eQTL 2.10e-02 0.465 0.2 0.051 CD8_TCM L2
ENSG00000134698 AGO4 -497117 sc-eQTL 9.46e-01 -0.0141 0.208 0.051 CD8_TCM L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 2.64e-01 0.216 0.193 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 5.60e-01 -0.109 0.187 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 2.62e-01 0.225 0.2 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 451144 sc-eQTL 2.46e-01 -0.231 0.198 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 8.75e-01 -0.0344 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 2.01e-01 0.255 0.199 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 8.56e-01 0.0342 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 9.56e-01 0.0108 0.197 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 9.85e-01 0.00295 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -246574 sc-eQTL 8.66e-01 0.0382 0.226 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 3.80e-01 -0.178 0.203 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 6.52e-01 0.0912 0.202 0.05 CD8_TEM L2
ENSG00000092847 AGO1 -558909 sc-eQTL 7.64e-01 -0.0636 0.212 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 8.88e-02 -0.335 0.196 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 117754 sc-eQTL 7.23e-01 -0.0446 0.125 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 3.96e-01 -0.184 0.216 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 9.96e-01 -0.00105 0.19 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 9.12e-01 0.0214 0.194 0.05 CD8_TEM L2
ENSG00000126070 AGO3 -619819 sc-eQTL 3.91e-01 0.182 0.212 0.05 CD8_TEM L2
ENSG00000134698 AGO4 -497117 sc-eQTL 6.30e-01 0.103 0.214 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 4.85e-01 -0.14 0.201 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 9.34e-01 0.0176 0.213 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 8.10e-01 -0.0534 0.221 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 451144 sc-eQTL 2.38e-01 -0.259 0.219 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 3.80e-01 0.192 0.218 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 5.61e-01 0.119 0.203 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 8.63e-01 0.0341 0.197 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 7.23e-02 0.373 0.206 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 9.10e-01 -0.0177 0.156 0.05 CD8_TEM L2
ENSG00000020129 NCDN -246574 sc-eQTL 6.57e-01 0.0946 0.212 0.051 NK_CD56bright L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 3.78e-01 -0.162 0.184 0.051 NK_CD56bright L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 5.12e-02 0.388 0.198 0.051 NK_CD56bright L2
ENSG00000092847 AGO1 -558909 sc-eQTL 4.81e-02 -0.412 0.207 0.051 NK_CD56bright L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 7.63e-01 0.0611 0.203 0.051 NK_CD56bright L2
ENSG00000116560 SFPQ 117754 sc-eQTL 4.99e-01 -0.0898 0.133 0.051 NK_CD56bright L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 1.88e-01 -0.278 0.211 0.051 NK_CD56bright L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 2.33e-01 -0.203 0.17 0.051 NK_CD56bright L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 5.75e-02 -0.315 0.165 0.051 NK_CD56bright L2
ENSG00000126070 AGO3 -619819 sc-eQTL 9.10e-03 -0.55 0.209 0.051 NK_CD56bright L2
ENSG00000134698 AGO4 -497117 sc-eQTL 7.59e-01 0.0609 0.199 0.051 NK_CD56bright L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 1.61e-01 -0.286 0.203 0.051 NK_CD56bright L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 4.82e-01 0.144 0.205 0.051 NK_CD56bright L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 1.68e-01 0.258 0.186 0.051 NK_CD56bright L2
ENSG00000163866 SMIM12 451144 sc-eQTL 8.81e-01 0.0334 0.223 0.051 NK_CD56bright L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 8.32e-01 -0.0471 0.222 0.051 NK_CD56bright L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 9.38e-01 0.0153 0.198 0.051 NK_CD56bright L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 6.82e-02 0.352 0.192 0.051 NK_CD56bright L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 7.77e-01 0.0598 0.211 0.051 NK_CD56bright L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 7.48e-01 0.0554 0.173 0.051 NK_CD56bright L2
ENSG00000020129 NCDN -246574 sc-eQTL 7.07e-02 0.37 0.204 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 7.74e-01 0.0481 0.167 0.05 Pro_T L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 3.19e-01 -0.188 0.188 0.05 Pro_T L2
ENSG00000092847 AGO1 -558909 sc-eQTL 9.14e-01 0.0246 0.226 0.05 Pro_T L2
ENSG00000092853 CLSPN -459079 sc-eQTL 5.51e-01 -0.0609 0.102 0.05 Pro_T L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 4.43e-01 -0.148 0.192 0.05 Pro_T L2
ENSG00000116560 SFPQ 117754 sc-eQTL 5.92e-02 0.275 0.145 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 3.22e-02 0.455 0.211 0.05 Pro_T L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 6.81e-02 0.279 0.152 0.05 Pro_T L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 4.61e-01 -0.0849 0.115 0.05 Pro_T L2
ENSG00000126070 AGO3 -619819 sc-eQTL 9.74e-02 0.344 0.207 0.05 Pro_T L2
ENSG00000134698 AGO4 -497117 sc-eQTL 1.86e-01 0.253 0.191 0.05 Pro_T L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 7.30e-03 -0.528 0.195 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 3.86e-01 0.195 0.224 0.05 Pro_T L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 6.98e-01 0.0846 0.218 0.05 Pro_T L2
ENSG00000163866 SMIM12 451144 sc-eQTL 8.00e-01 -0.053 0.209 0.05 Pro_T L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 1.19e-01 0.354 0.226 0.05 Pro_T L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 7.72e-01 -0.055 0.19 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 2.22e-01 -0.245 0.2 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 2.52e-01 0.233 0.203 0.05 Pro_T L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 3.74e-01 0.152 0.17 0.05 Pro_T L2
ENSG00000020129 NCDN -246574 sc-eQTL 7.25e-01 0.0862 0.244 0.055 gdT L2
ENSG00000054116 TRAPPC3 -845154 sc-eQTL 7.52e-01 0.0672 0.212 0.055 gdT L2
ENSG00000054118 THRAP3 -913533 sc-eQTL 2.52e-01 0.283 0.246 0.055 gdT L2
ENSG00000092847 AGO1 -558909 sc-eQTL 2.64e-01 -0.29 0.258 0.055 gdT L2
ENSG00000092853 CLSPN -459079 sc-eQTL 4.84e-01 -0.143 0.203 0.055 gdT L2
ENSG00000116544 DLGAP3 381249 sc-eQTL 7.75e-01 0.0681 0.238 0.055 gdT L2
ENSG00000116560 SFPQ 117754 sc-eQTL 2.10e-01 -0.196 0.156 0.055 gdT L2
ENSG00000116863 ADPRHL2 -777993 sc-eQTL 7.30e-01 0.0827 0.239 0.055 gdT L2
ENSG00000116871 MAP7D1 -844680 sc-eQTL 8.36e-01 0.0423 0.204 0.055 gdT L2
ENSG00000126067 PSMB2 -330627 sc-eQTL 2.35e-01 0.261 0.219 0.055 gdT L2
ENSG00000126070 AGO3 -619819 sc-eQTL 3.20e-01 0.237 0.237 0.055 gdT L2
ENSG00000134698 AGO4 -497117 sc-eQTL 3.11e-01 0.236 0.232 0.055 gdT L2
ENSG00000142686 C1orf216 -407995 sc-eQTL 9.85e-01 -0.00459 0.236 0.055 gdT L2
ENSG00000142687 KIAA0319L -247051 sc-eQTL 3.80e-01 -0.209 0.237 0.055 gdT L2
ENSG00000146463 ZMYM4 42190 sc-eQTL 4.20e-01 0.185 0.229 0.055 gdT L2
ENSG00000163866 SMIM12 451144 sc-eQTL 5.97e-01 -0.131 0.248 0.055 gdT L2
ENSG00000163867 ZMYM6 278954 sc-eQTL 2.81e-02 0.56 0.253 0.055 gdT L2
ENSG00000197056 ZMYM1 278727 sc-eQTL 5.34e-01 0.144 0.23 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -55178 sc-eQTL 3.48e-01 -0.205 0.218 0.055 gdT L2
ENSG00000239636 AC004865.2 -266830 sc-eQTL 2.85e-01 0.228 0.212 0.055 gdT L2
ENSG00000243749 TMEM35B 325546 sc-eQTL 6.15e-02 -0.339 0.18 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000054116 TRAPPC3 -845154 eQTL 0.0065 0.0655 0.024 0.0 0.0 0.054
ENSG00000126067 PSMB2 -330627 eQTL 3.63e-17 -0.205 0.0239 0.0 0.0 0.054
ENSG00000142686 C1orf216 -407995 eQTL 0.062 0.0722 0.0386 0.00171 0.0 0.054
ENSG00000163867 ZMYM6 278954 eQTL 0.0489 -0.06 0.0304 0.0 0.0 0.054
ENSG00000171812 COL8A2 -814323 eQTL 0.0362 -0.101 0.0483 0.0 0.0 0.054
ENSG00000239636 AC004865.2 -266830 eQTL 0.000319 0.229 0.0635 0.00184 0.00128 0.054
ENSG00000243749 TMEM35B 325546 eQTL 0.00108 0.112 0.0343 0.0 0.0 0.054

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054118 \N -913533 2.76e-07 1.27e-07 5.64e-08 1.81e-07 1.01e-07 9.91e-08 1.6e-07 5.43e-08 1.45e-07 6.08e-08 1.57e-07 1.05e-07 1.53e-07 7.13e-08 6.18e-08 7.23e-08 4.12e-08 1.44e-07 6.07e-08 4.23e-08 1.22e-07 1.26e-07 1.44e-07 2.93e-08 1.55e-07 1.26e-07 1.13e-07 9.74e-08 1.23e-07 1.07e-07 1.02e-07 3.08e-08 3.96e-08 8.11e-08 6.34e-08 3.04e-08 4.99e-08 9.36e-08 6.54e-08 3.76e-08 5.13e-08 1.4e-07 5.21e-08 1.49e-08 4.7e-08 1.84e-08 1.21e-07 3.78e-09 5e-08
ENSG00000126067 PSMB2 -330627 1.27e-06 9.53e-07 3.41e-07 4.15e-07 2.79e-07 4.43e-07 1.13e-06 3.34e-07 1.2e-06 3.95e-07 1.4e-06 6.03e-07 1.73e-06 2.68e-07 4.31e-07 8.25e-07 7.74e-07 5.82e-07 5.36e-07 6.26e-07 4.43e-07 1.19e-06 7.76e-07 5.75e-07 1.92e-06 3.87e-07 7.27e-07 6.46e-07 1.12e-06 1.06e-06 5.79e-07 1.3e-07 2.27e-07 5.45e-07 4.28e-07 4.32e-07 3.96e-07 1.61e-07 1.71e-07 8.82e-08 2.97e-07 1.43e-06 5.58e-08 1.95e-08 2.01e-07 7.84e-08 2.45e-07 7.69e-08 1.11e-07
ENSG00000239636 AC004865.2 -266830 1.34e-06 1.18e-06 2.43e-07 1.14e-06 3.68e-07 6.05e-07 1.48e-06 4.35e-07 1.66e-06 6.05e-07 2.01e-06 9.21e-07 2.45e-06 2.86e-07 5.06e-07 9.98e-07 9.75e-07 1.05e-06 7.14e-07 5.17e-07 7.61e-07 1.89e-06 1.11e-06 6.27e-07 2.25e-06 7.38e-07 1.02e-06 9.43e-07 1.64e-06 1.21e-06 8.11e-07 2.96e-07 2.86e-07 5.94e-07 5.3e-07 5.24e-07 7.4e-07 2.46e-07 4.72e-07 2.98e-07 2.8e-07 1.65e-06 1.68e-07 8.08e-08 3.04e-07 1.72e-07 2.27e-07 8.19e-08 2.57e-07
ENSG00000243749 TMEM35B 325546 1.26e-06 9.44e-07 3.26e-07 4.72e-07 2.95e-07 4.63e-07 1.15e-06 3.51e-07 1.24e-06 4.15e-07 1.36e-06 5.86e-07 1.76e-06 2.67e-07 4.61e-07 8.28e-07 7.93e-07 5.99e-07 5.83e-07 6.39e-07 4.44e-07 1.22e-06 8.26e-07 6.1e-07 1.94e-06 3.91e-07 7.55e-07 6.89e-07 1.19e-06 1.07e-06 5.48e-07 1.55e-07 2.43e-07 5.46e-07 4.17e-07 4.74e-07 4.26e-07 1.47e-07 1.96e-07 9.03e-08 2.77e-07 1.48e-06 6.65e-08 2.62e-08 1.72e-07 8.83e-08 2.21e-07 8.67e-08 1.14e-07