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Genes within 1Mb (chr1:35307823:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000020129 NCDN -249650 sc-eQTL 3.28e-02 0.437 0.203 0.052 CD4_CTL L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 7.10e-01 0.0703 0.188 0.052 CD4_CTL L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 6.05e-01 0.0993 0.192 0.052 CD4_CTL L2
ENSG00000092847 AGO1 -561985 sc-eQTL 3.11e-01 0.212 0.209 0.052 CD4_CTL L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 8.95e-01 -0.0251 0.191 0.052 CD4_CTL L2
ENSG00000116560 SFPQ 114678 sc-eQTL 2.78e-01 0.149 0.137 0.052 CD4_CTL L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 8.02e-01 -0.0516 0.205 0.052 CD4_CTL L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 2.18e-01 -0.205 0.166 0.052 CD4_CTL L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 7.49e-01 0.0627 0.195 0.052 CD4_CTL L2
ENSG00000126070 AGO3 -622895 sc-eQTL 2.18e-01 0.246 0.199 0.052 CD4_CTL L2
ENSG00000134698 AGO4 -500193 sc-eQTL 9.80e-01 -0.00464 0.185 0.052 CD4_CTL L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 2.13e-01 -0.234 0.188 0.052 CD4_CTL L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 3.71e-01 -0.187 0.209 0.052 CD4_CTL L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 7.15e-01 -0.0758 0.207 0.052 CD4_CTL L2
ENSG00000163866 SMIM12 448068 sc-eQTL 3.59e-01 0.179 0.195 0.052 CD4_CTL L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 5.52e-02 0.405 0.21 0.052 CD4_CTL L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 8.99e-01 -0.0272 0.214 0.052 CD4_CTL L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 3.95e-01 -0.164 0.192 0.052 CD4_CTL L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 6.04e-01 -0.0995 0.191 0.052 CD4_CTL L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 6.16e-01 0.0813 0.162 0.052 CD4_CTL L2
ENSG00000020129 NCDN -249650 sc-eQTL 6.38e-01 -0.0978 0.208 0.051 CD8_TCM L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 7.29e-01 0.0687 0.198 0.051 CD8_TCM L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 5.47e-02 0.372 0.193 0.051 CD8_TCM L2
ENSG00000092847 AGO1 -561985 sc-eQTL 1.30e-01 -0.302 0.198 0.051 CD8_TCM L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 8.07e-01 0.05 0.204 0.051 CD8_TCM L2
ENSG00000116560 SFPQ 114678 sc-eQTL 8.90e-01 0.0161 0.116 0.051 CD8_TCM L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 1.55e-01 0.304 0.213 0.051 CD8_TCM L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 9.72e-01 -0.00564 0.158 0.051 CD8_TCM L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 7.04e-01 -0.0741 0.195 0.051 CD8_TCM L2
ENSG00000126070 AGO3 -622895 sc-eQTL 2.10e-02 0.465 0.2 0.051 CD8_TCM L2
ENSG00000134698 AGO4 -500193 sc-eQTL 9.46e-01 -0.0141 0.208 0.051 CD8_TCM L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 2.64e-01 0.216 0.193 0.051 CD8_TCM L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 5.60e-01 -0.109 0.187 0.051 CD8_TCM L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 2.62e-01 0.225 0.2 0.051 CD8_TCM L2
ENSG00000163866 SMIM12 448068 sc-eQTL 2.46e-01 -0.231 0.198 0.051 CD8_TCM L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 8.75e-01 -0.0344 0.218 0.051 CD8_TCM L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 2.01e-01 0.255 0.199 0.051 CD8_TCM L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 8.56e-01 0.0342 0.189 0.051 CD8_TCM L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 9.56e-01 0.0108 0.197 0.051 CD8_TCM L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 9.85e-01 0.00295 0.16 0.051 CD8_TCM L2
ENSG00000020129 NCDN -249650 sc-eQTL 8.66e-01 0.0382 0.226 0.05 CD8_TEM L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 3.80e-01 -0.178 0.203 0.05 CD8_TEM L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 6.52e-01 0.0912 0.202 0.05 CD8_TEM L2
ENSG00000092847 AGO1 -561985 sc-eQTL 7.64e-01 -0.0636 0.212 0.05 CD8_TEM L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 8.88e-02 -0.335 0.196 0.05 CD8_TEM L2
ENSG00000116560 SFPQ 114678 sc-eQTL 7.23e-01 -0.0446 0.125 0.05 CD8_TEM L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 3.96e-01 -0.184 0.216 0.05 CD8_TEM L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 9.96e-01 -0.00105 0.19 0.05 CD8_TEM L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 9.12e-01 0.0214 0.194 0.05 CD8_TEM L2
ENSG00000126070 AGO3 -622895 sc-eQTL 3.91e-01 0.182 0.212 0.05 CD8_TEM L2
ENSG00000134698 AGO4 -500193 sc-eQTL 6.30e-01 0.103 0.214 0.05 CD8_TEM L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 4.85e-01 -0.14 0.201 0.05 CD8_TEM L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 9.34e-01 0.0176 0.213 0.05 CD8_TEM L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 8.10e-01 -0.0534 0.221 0.05 CD8_TEM L2
ENSG00000163866 SMIM12 448068 sc-eQTL 2.38e-01 -0.259 0.219 0.05 CD8_TEM L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 3.80e-01 0.192 0.218 0.05 CD8_TEM L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 5.61e-01 0.119 0.203 0.05 CD8_TEM L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 8.63e-01 0.0341 0.197 0.05 CD8_TEM L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 7.23e-02 0.373 0.206 0.05 CD8_TEM L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 9.10e-01 -0.0177 0.156 0.05 CD8_TEM L2
ENSG00000020129 NCDN -249650 sc-eQTL 6.57e-01 0.0946 0.212 0.051 NK_CD56bright L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 3.78e-01 -0.162 0.184 0.051 NK_CD56bright L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 5.12e-02 0.388 0.198 0.051 NK_CD56bright L2
ENSG00000092847 AGO1 -561985 sc-eQTL 4.81e-02 -0.412 0.207 0.051 NK_CD56bright L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 7.63e-01 0.0611 0.203 0.051 NK_CD56bright L2
ENSG00000116560 SFPQ 114678 sc-eQTL 4.99e-01 -0.0898 0.133 0.051 NK_CD56bright L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 1.88e-01 -0.278 0.211 0.051 NK_CD56bright L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 2.33e-01 -0.203 0.17 0.051 NK_CD56bright L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 5.75e-02 -0.315 0.165 0.051 NK_CD56bright L2
ENSG00000126070 AGO3 -622895 sc-eQTL 9.10e-03 -0.55 0.209 0.051 NK_CD56bright L2
ENSG00000134698 AGO4 -500193 sc-eQTL 7.59e-01 0.0609 0.199 0.051 NK_CD56bright L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 1.61e-01 -0.286 0.203 0.051 NK_CD56bright L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 4.82e-01 0.144 0.205 0.051 NK_CD56bright L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 1.68e-01 0.258 0.186 0.051 NK_CD56bright L2
ENSG00000163866 SMIM12 448068 sc-eQTL 8.81e-01 0.0334 0.223 0.051 NK_CD56bright L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 8.32e-01 -0.0471 0.222 0.051 NK_CD56bright L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 9.38e-01 0.0153 0.198 0.051 NK_CD56bright L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 6.82e-02 0.352 0.192 0.051 NK_CD56bright L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 7.77e-01 0.0598 0.211 0.051 NK_CD56bright L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 7.48e-01 0.0554 0.173 0.051 NK_CD56bright L2
ENSG00000020129 NCDN -249650 sc-eQTL 7.07e-02 0.37 0.204 0.05 Pro_T L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 7.74e-01 0.0481 0.167 0.05 Pro_T L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 3.19e-01 -0.188 0.188 0.05 Pro_T L2
ENSG00000092847 AGO1 -561985 sc-eQTL 9.14e-01 0.0246 0.226 0.05 Pro_T L2
ENSG00000092853 CLSPN -462155 sc-eQTL 5.51e-01 -0.0609 0.102 0.05 Pro_T L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 4.43e-01 -0.148 0.192 0.05 Pro_T L2
ENSG00000116560 SFPQ 114678 sc-eQTL 5.92e-02 0.275 0.145 0.05 Pro_T L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 3.22e-02 0.455 0.211 0.05 Pro_T L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 6.81e-02 0.279 0.152 0.05 Pro_T L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 4.61e-01 -0.0849 0.115 0.05 Pro_T L2
ENSG00000126070 AGO3 -622895 sc-eQTL 9.74e-02 0.344 0.207 0.05 Pro_T L2
ENSG00000134698 AGO4 -500193 sc-eQTL 1.86e-01 0.253 0.191 0.05 Pro_T L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 7.30e-03 -0.528 0.195 0.05 Pro_T L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 3.86e-01 0.195 0.224 0.05 Pro_T L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 6.98e-01 0.0846 0.218 0.05 Pro_T L2
ENSG00000163866 SMIM12 448068 sc-eQTL 8.00e-01 -0.053 0.209 0.05 Pro_T L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 1.19e-01 0.354 0.226 0.05 Pro_T L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 7.72e-01 -0.055 0.19 0.05 Pro_T L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 2.22e-01 -0.245 0.2 0.05 Pro_T L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 2.52e-01 0.233 0.203 0.05 Pro_T L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 3.74e-01 0.152 0.17 0.05 Pro_T L2
ENSG00000020129 NCDN -249650 sc-eQTL 7.25e-01 0.0862 0.244 0.055 gdT L2
ENSG00000054116 TRAPPC3 -848230 sc-eQTL 7.52e-01 0.0672 0.212 0.055 gdT L2
ENSG00000054118 THRAP3 -916609 sc-eQTL 2.52e-01 0.283 0.246 0.055 gdT L2
ENSG00000092847 AGO1 -561985 sc-eQTL 2.64e-01 -0.29 0.258 0.055 gdT L2
ENSG00000092853 CLSPN -462155 sc-eQTL 4.84e-01 -0.143 0.203 0.055 gdT L2
ENSG00000116544 DLGAP3 378173 sc-eQTL 7.75e-01 0.0681 0.238 0.055 gdT L2
ENSG00000116560 SFPQ 114678 sc-eQTL 2.10e-01 -0.196 0.156 0.055 gdT L2
ENSG00000116863 ADPRHL2 -781069 sc-eQTL 7.30e-01 0.0827 0.239 0.055 gdT L2
ENSG00000116871 MAP7D1 -847756 sc-eQTL 8.36e-01 0.0423 0.204 0.055 gdT L2
ENSG00000126067 PSMB2 -333703 sc-eQTL 2.35e-01 0.261 0.219 0.055 gdT L2
ENSG00000126070 AGO3 -622895 sc-eQTL 3.20e-01 0.237 0.237 0.055 gdT L2
ENSG00000134698 AGO4 -500193 sc-eQTL 3.11e-01 0.236 0.232 0.055 gdT L2
ENSG00000142686 C1orf216 -411071 sc-eQTL 9.85e-01 -0.00459 0.236 0.055 gdT L2
ENSG00000142687 KIAA0319L -250127 sc-eQTL 3.80e-01 -0.209 0.237 0.055 gdT L2
ENSG00000146463 ZMYM4 39114 sc-eQTL 4.20e-01 0.185 0.229 0.055 gdT L2
ENSG00000163866 SMIM12 448068 sc-eQTL 5.97e-01 -0.131 0.248 0.055 gdT L2
ENSG00000163867 ZMYM6 275878 sc-eQTL 2.81e-02 0.56 0.253 0.055 gdT L2
ENSG00000197056 ZMYM1 275651 sc-eQTL 5.34e-01 0.144 0.23 0.055 gdT L2
ENSG00000227409 ZMYM4-AS1 -58254 sc-eQTL 3.48e-01 -0.205 0.218 0.055 gdT L2
ENSG00000239636 AC004865.2 -269906 sc-eQTL 2.85e-01 0.228 0.212 0.055 gdT L2
ENSG00000243749 TMEM35B 322470 sc-eQTL 6.15e-02 -0.339 0.18 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000054118 \N -916609 2.74e-07 1.25e-07 4.47e-08 1.84e-07 9.16e-08 9.8e-08 1.49e-07 5.43e-08 1.45e-07 4.94e-08 1.62e-07 8.68e-08 1.45e-07 6.56e-08 6.17e-08 7.3e-08 3.93e-08 1.26e-07 5.39e-08 4.1e-08 1.08e-07 1.28e-07 1.39e-07 3.23e-08 1.4e-07 1.14e-07 1.07e-07 9.57e-08 1.08e-07 1.02e-07 9.64e-08 3.64e-08 3.56e-08 8.34e-08 7.51e-08 3.6e-08 5.03e-08 8.93e-08 6.55e-08 3.77e-08 5.13e-08 1.35e-07 5.24e-08 1.61e-08 5.43e-08 1.99e-08 1.22e-07 3.8e-09 4.79e-08
ENSG00000126067 \N -333703 1.22e-06 9.27e-07 2.84e-07 3.44e-07 1.87e-07 4.02e-07 8.96e-07 3.45e-07 1.11e-06 3.13e-07 1.22e-06 5.7e-07 1.46e-06 2.09e-07 4.39e-07 5.7e-07 7.57e-07 5.27e-07 3.95e-07 4.52e-07 2.83e-07 8.58e-07 6.04e-07 4.87e-07 1.7e-06 2.7e-07 6.16e-07 4.94e-07 7.69e-07 9.93e-07 4.53e-07 3.82e-08 1.48e-07 3.66e-07 3.6e-07 2.99e-07 3.12e-07 1.51e-07 1.49e-07 9.61e-09 2.32e-07 1.06e-06 5.65e-08 1.28e-08 1.73e-07 7.64e-08 1.6e-07 8.82e-08 5.02e-08
ENSG00000239636 \N -269906 1.24e-06 9.59e-07 3.21e-07 1.02e-06 3.44e-07 5.96e-07 1.6e-06 3.9e-07 1.49e-06 4.78e-07 1.79e-06 7.48e-07 2.23e-06 3e-07 5.4e-07 9.2e-07 8.95e-07 7.02e-07 7.73e-07 6.52e-07 6.61e-07 1.63e-06 8.31e-07 5.77e-07 2.26e-06 4.83e-07 9.01e-07 7.08e-07 1.31e-06 1.25e-06 6.9e-07 2.06e-07 1.89e-07 6.93e-07 5.6e-07 4.37e-07 5.53e-07 2.42e-07 4.94e-07 2.93e-07 2.87e-07 1.47e-06 9.66e-08 6.46e-08 2.22e-07 1.26e-07 2.19e-07 3.66e-08 1.16e-07
ENSG00000243749 \N 322470 1.28e-06 9.01e-07 3e-07 4.19e-07 2.19e-07 4.35e-07 1.02e-06 3.25e-07 1.13e-06 3.8e-07 1.32e-06 5.49e-07 1.58e-06 2.4e-07 4.41e-07 6.22e-07 7.73e-07 5.65e-07 3.71e-07 5.57e-07 3.39e-07 9.58e-07 7.16e-07 5.36e-07 1.85e-06 3.02e-07 6.18e-07 5.31e-07 8.81e-07 1.06e-06 5.23e-07 4.94e-08 1.76e-07 4.57e-07 4.28e-07 3.16e-07 3.79e-07 1.23e-07 2.17e-07 3.03e-08 2.75e-07 1.19e-06 7.66e-08 1.95e-08 1.61e-07 7.36e-08 1.86e-07 8.51e-08 6.58e-08